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Commit 751c0c7c authored by Dethinne Thomas's avatar Dethinne Thomas
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Update caraib_01_Iv_2020_Belgium_coupling.dat

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couplage/data_to_copy/caraib_01_Iv_2020_Belgium_coupling.dat
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isteady,ny0max : 1 1
readsteady,coupling: 0 1
1 to call generator: 0
ifrac (1=calc frac): 1
ifrac_rd,ilai_rd : 0 0
idayt,ifull,jclonly: 1 0 0
ilu,imanag : 1 0
ilusp_rd,isowd_rd : 0 0
ncropvar,icvar_rd : 0 0
ifire,iclim,ilgtree: 0 0 0
jdwnCO2,jrd_accl : 2 2
imig,isp,imig_rd : 0 6 0 ; isp= 6 or 8 (species which is dispersed)
nyrmax,ileap : 1 1
itmt(too much time): 0
nyrprt,nstprt : 0 0
iread,iczon : 0 1
idaily_in,idaily_ou: 1 1
idtem,isol : 1 1
pixel number : 10800
igtyp,declg,declat : 0 0.06300 0.02000
prec_co : 3.e-4
ipar,exc,obl,xlsper: 0 0.016724 23.447 282.16
nherb,nbush,ntree,n: 1 1 14 12 1
fil ext inp weather:.dat
fil ext results :.res
soil texture :./CARAIB_couplage/clim/Belgium/ecotxt.dat
pixel corners :/-------- no file for pixelcorners.dat
climate data :/-------- no file for climate_data.dat
air temp (climatol):0 ./CARAIB_couplage/clim/Belgium/temyyyy.dat
units,netcdf : 0.0 1.0 0 &tem
precip (climatol):0 ./CARAIB_couplage/clim/Belgium/prcyyyy.dat
units,netcdf : 0.0 1.0 0 &prc
air temperature :1 ./CARAIB_couplage/clim/Belgium/tem
units,netcdf : 0.0 1.0 0 &tas
Max air temp. :1 ./CARAIB_couplage/clim/Belgium/tmax
units,netcdf : 0.0 1.0 0 &tasmax
Min air temp. :1 ./CARAIB_couplage/clim/Belgium/tmin
units,netcdf : 0.0 1.0 0 &tasmin
precipitation :1 ./CARAIB_couplage/clim/Belgium/prc
units,netcdf : 0.0 1.0 0 &pr
sunsh hr/solar fl :1 ./CARAIB_couplage/clim/Belgium/fsol
units,netcdf : 0.0 1.0 0 &rsds
air relat. humidity:1 ./CARAIB_couplage/clim/Belgium/rhu
units,netcdf : 0.0 1.0 0 &rhs
wind speed :1 ./CARAIB_couplage/clim/Belgium/wnd
units,netcdf : 0.0 1.0 0 &wind
management :0 /-------- no file for manag.dat
lightning data :0 ./CARAIB_couplage/clim/Belgium/lightning.dat
land use cover :0 ./CARAIB_couplage/clim/Belgium/land_use_caraib.dat
LU species rel abun:2 ./CARAIB_couplage/plantparam/frac_crop_elv
crop sowing dates :0 /-------- no file for sowing_dates.dat
crop cultivars :0 /-------- no file for cultivars_ric_20_6c05.dat
migration rate :0 /-------- no file for Heterogeneity_40.dat
species refugia :0 /-------- no file for Fagus_pa_10k.txt
path for generator :/raid/umccb/francois/gene/
PFT alb zzra t1 t2 :./CARAIB_couplage/plantparam/species_ibm.dat
PFT tolerances :./CARAIB_couplage/plantparam/species_tol_t6.dat
PFT parameters :./CARAIB_couplage/plantparam/species_par.dat
PFT age class para :./CARAIB_couplage/plantparam/species_clas.dat
PFT C:N of veget :./CARAIB_couplage/plantparam/species_csurn.dat
PFT 1/gkfall :./CARAIB_couplage/plantparam/species_gk.dat
PFT gama1, gama2 :./CARAIB_couplage/plantparam/gama_soil.dat
PFT carb_init :./CARAIB_couplage/plantparam/species_carb.dat
crops seasonality :./CARAIB_couplage/plantparam/species_seas_t6c.dat
print clim tem :0 /no_climate_outputs/tem
print clim dte :0 /no_climate_outputs/dte
print clim prc :0 /no_climate_outputs/prc
print clim shr/fsol:0 /no_climate_outputs/shr
print clim rhu :0 /no_climate_outputs/rhu
print clim win :0 /no_climate_outputs/wnd
initial veget frac:./CARAIB_couplage/results/Belgium/frac
initial Min Max LAI:./CARAIB_couplage/results/Belgium/xlai_min_max
read initial cond :./CARAIB_couplage/results/Belgium/biomass
read lai limit :./CARAIB_couplage/results/Belgium/ylailim
read ini cond crops:./CARAIB_couplage/results/Belgium/cropino
read prev year CO2 :./CARAIB_couplage/results/Belgium/co2prev
read prev year temp:./CARAIB_couplage/results/Belgium/temprev
read prev year LU :./CARAIB_couplage/clim/Belgium/land_use_caraib.dat
initial propagation:/-------- no file for prop09999.res
initial side pres :/-------- no file for side09999.res
initial pixel pres :/-------- no file for pres09999.res
in/out climate zone:0 ./CARAIB_couplage/results/Belgium/zone1991.dat
in/out stoch.fields:./CARAIB_couplage/results/Belgium/stochas.gen
ibm results (full) :./CARAIB_couplage/results/Belgium/water.full
1st day of year res:./CARAIB_couplage/results/Belgium/biomass
monthly lai limit :./CARAIB_couplage/results/Belgium/ylailim
1st part crops :./CARAIB_couplage/results/Belgium/cropino
wri prev year CO2 :./CARAIB_couplage/results/Belgium/co2prev
wri prev year temp :./CARAIB_couplage/results/Belgium/temprev
results (test file):./CARAIB_couplage/results/Belgium/water.tes
test (problems) :./CARAIB_couplage/results/Belgium/caraib.problem
current pixel-date :./CARAIB_couplage/results/Belgium/water.time
annual hydr results:1 ./CARAIB_couplage/results/Belgium/water_yr
annual frc per pft :1 ./CARAIB_couplage/results/Belgium/frc
mon/day mean sw :1 ./CARAIB_couplage/results/Belgium/sw
mon/day mean sw(mm):1 ./CARAIB_couplage/results/Belgium/swmm
mon/day mean rtr :0 ./CARAIB_couplage/results/Belgium/rtr
mon/day mean pet :1 ./CARAIB_couplage/results/Belgium/pet
mon/day mean aet :1 ./CARAIB_couplage/results/Belgium/aet
mon/day mean totrun:1 ./CARAIB_couplage/results/Belgium/run
mon/day mean fsn :1 ./CARAIB_couplage/results/Belgium/fsn
mon/day mean snd :1 ./CARAIB_couplage/results/Belgium/snd
mon/day mean srun :1 ./CARAIB_couplage/results/Belgium/srun
mon/day mean drain :1 ./CARAIB_couplage/results/Belgium/drn
mon/day mean sv ev :0 ./CARAIB_couplage/results/Belgium/sve
mon/day mean int ev:1 ./CARAIB_couplage/results/Belgium/eint
mon/day mean transp:1 ./CARAIB_couplage/results/Belgium/etr
mon/day mean soilev:1 ./CARAIB_couplage/results/Belgium/eso
mon/day mean rbl :0 ./CARAIB_couplage/results/Belgium/rbl
mon/day mean albedo:1 ./CARAIB_couplage/results/Belgium/alb
mon/day mean albsv :1 ./CARAIB_couplage/results/Belgium/albsv
mon/day mean albs :1 ./CARAIB_couplage/results/Belgium/albs
mon/day mean albv :1 ./CARAIB_couplage/results/Belgium/albv
mon/day mean Rn :0 ./CARAIB_couplage/results/Belgium/rn
mon/day mean gr flx:0 ./CARAIB_couplage/results/Belgium/grf
mon/day mean Ts :1 ./CARAIB_couplage/results/Belgium/ts
mon/day mean fgs :1 ./CARAIB_couplage/results/Belgium/fgs
mon/day mean LAI(w):1 ./CARAIB_couplage/results/Belgium/lai
mon/day mean IRdown:1 ./CARAIB_couplage/results/Belgium/fird
mon/day mean H :1 ./CARAIB_couplage/results/Belgium/xh
mon/day mean LE :1 ./CARAIB_couplage/results/Belgium/xle
mon/day mean Fsol :1 ./CARAIB_couplage/results/Belgium/fsol
mon/day mean sn fal:0 ./CARAIB_couplage/results/Belgium/sf
mon/day mean sn ev :1 ./CARAIB_couplage/results/Belgium/sne
mon/day mean sn mel:0 ./CARAIB_couplage/results/Belgium/sml
mon/day mean emisf :1 ./CARAIB_couplage/results/Belgium/emisf
mon/day mean emins :1 ./CARAIB_couplage/results/Belgium/emisfns
mon/day mean z0tot :1 ./CARAIB_couplage/results/Belgium/z0
mon/day mean biom :1 ./CARAIB_couplage/results/Belgium/biommth
mon/day mean gpp :1 ./CARAIB_couplage/results/Belgium/gppmth
mon/day mean Ra :1 ./CARAIB_couplage/results/Belgium/ramth
mon/day mean npp :1 ./CARAIB_couplage/results/Belgium/nppmth
mon/day mean nep :1 ./CARAIB_couplage/results/Belgium/nepmth
mon/day mean Rh :1 ./CARAIB_couplage/results/Belgium/rhmth
mon/day mean lai(C):1 ./CARAIB_couplage/results/Belgium/laimth
mon/day fire emi :0 ./CARAIB_couplage/results/Belgium/emifiremth
mon/day burned lit :0 ./CARAIB_couplage/results/Belgium/emiblitmth
mon/day mean nbp :1 ./CARAIB_couplage/results/Belgium/nbpmth
mon/day mean harv :1 ./CARAIB_couplage/results/Belgium/harvmth
mon/day mean fapar :1 ./CARAIB_couplage/results/Belgium/faparmth
veget cover frac :1 ./CARAIB_couplage/results/Belgium/frac
PFT npp :1 ./CARAIB_couplage/results/Belgium/npp
Rmin :0 ./CARAIB_couplage/results/Belgium/Rmin
PFT Min Max LAI :1 ./CARAIB_couplage/results/Belgium/xlai_min_max
PFT GPP :1 ./CARAIB_couplage/results/Belgium/gpp
PFT auto resp Ra :1 ./CARAIB_couplage/results/Belgium/ra
PFT fire emission :0 ./CARAIB_couplage/results/Belgium/emifire
Cveg :1 ./CARAIB_couplage/results/Belgium/Cveg
Csoil :1 ./CARAIB_couplage/results/Belgium/Csoil
C13 fractionation :0 ./CARAIB_couplage/results/Belgium/frcC13
Mean LAI :1 ./CARAIB_couplage/results/Belgium/laimoy
Tmin :0 ./CARAIB_couplage/results/Belgium/Tdmin
Tc :0 ./CARAIB_couplage/results/Belgium/Tmmin
GDD :1 ./CARAIB_couplage/results/Belgium/gdd
probability of fire:0 ./CARAIB_couplage/results/Belgium/pfire
burned pix fraction:0 ./CARAIB_couplage/results/Belgium/fburn
burned area :1 ./CARAIB_couplage/results/Belgium/aburn
harvested biomass :0 ./CARAIB_couplage/results/Belgium/harvest
yield :1 ./CARAIB_couplage/results/Belgium/yield
aboveground biomass:1 ./CARAIB_couplage/results/Belgium/agbiom
aboveground biomass:1 ./CARAIB_couplage/results/Belgium/bgbiom
maturity date :1 ./CARAIB_couplage/results/Belgium/maturity
lucdfr (LU frac ch):1 ./CARAIB_couplage/results/Belgium/lucdfr
lucflx (emi & lit) :1 ./CARAIB_couplage/results/Belgium/lucflx
fire mort coef :0 ./CARAIB_couplage/results/Belgium/yfburn
temp mort coef :0 ./CARAIB_couplage/results/Belgium/ftomin
water mort coef :0 ./CARAIB_couplage/results/Belgium/ftotw
total mort coef :1 ./CARAIB_couplage/results/Belgium/ftot
gdd5 coef :1 ./CARAIB_couplage/results/Belgium/Fgdd5
Tmmin coef :0 ./CARAIB_couplage/results/Belgium/FTmmin
watmin coef :0 ./CARAIB_couplage/results/Belgium/Fwatmin
propagation :0 ./CARAIB_couplage/results/Belgium/prop
pixel side pres :0 ./CARAIB_couplage/results/Belgium/side
pixel pres :0 ./CARAIB_couplage/results/Belgium/pres
year*pco2**nys**ipr_clim*iprt*filexto-(31-46)**filextlu-(48-63)*filexti-(65-184)*********************************************************************************************************idayct (186-191)
2010 388.57 0 0 1 2010 2010 2010
2011 390.49 0 0 1 2011 2011 2011
2012 392.52 0 0 1 2012 2012 2012
2013 395.19 0 0 1 2013 2013 2013
2014 397.12 0 0 1 2014 2014 2014
2015 399.41 0 0 1 2015 2015 2015
2016 402.86 0 0 1 2016 2016 2016
2017 405.00 0 0 1 2017 2017 2017
2018 407.39 0 0 1 2018 2018 2018
2019 409.80 0 0 1 2019 2019 2019
!
#!/bin/bash
#Define your region
reg="EU"
#Define your domain
cod="x"
#Define your country
count="Belgium"
#Define the path to your copy of NESTOR domain
nest="/climato_tmp1/tdethinne/domains/NST.2018.08.01.00.EUa.nc"
#Define the path to your file necessary as Caraib Starting point
str="/climato_tmp1/tdethinne/srv9/init_data"
#+++++++++++++++++++++++++++++++++#
# do not edit after here #
#+++++++++++++++++++++++++++++++++#
# Check if an argument is provided
if [ -z "$1" ]; then
echo "Usage: $0 <0 or 1>"
exit 1
fi
dom=$reg$cod
directory=/climato_tmp1/$USER/MAR/out/$dom/
# Perform actions based on the argument
if [ "$1" -eq 0 ]; then
echo "The script will set your MAR/out/$dom/so it match the required shape and move the files"
fi
if [ "$1" -eq 1 ]; then
echo " The script will set your MAR/out/$dom/so it match the required shape and move the files and compile the model"
fi
# Copy the code of the coupling
echo "Copy of the code"
mkdir -p $directory/${cod}99/code
scp -r /climato_tmp1/tdethinne/MAR/src/MARCAR/* $directory/${cod}99/code
ln -s MAR_c01.exe $directory/${cod}99/code/MAR_${cod}99.exe
if [ "$1" -eq 1 ]; then
echo "Compile the code"
$directory/${cod}99/code/COMPILE
fi
#Recreate the CARAIB directories
mkdir -p $directory/CARAIB_couplage/
mkdir -p $directory/CARAIB_couplage/clim/$count/
mkdir -p $directory/CARAIB_couplage/ctrl/
mkdir -p $directory/CARAIB_couplage/data/
mkdir -p $directory/CARAIB_couplage/results/$count/
#Move the MAR results to a new place
echo "move the MAR results to another place"
mkdir -p $directory/${cod}99/mar/
mkdir -p $directory/${cod}99/caraib/
mv 19* $directory/${cod}99/mar/
mv 20* $directory/${cod}99/mar/
mv 21* $directory/${cod}99/mar/
echo "Copy the necessary files"
cp $nest $directory/CARAIB_couplage/clim/$count/
cp /srv9_tmp1/tdethinne/data_to_coupled/*.dat $directory/CARAIB_couplage/ctrl/
cp /srv9_tmp1/tdethinne/data_to_coupled/ecotx.1x1 $directory/CARAIB_couplage/data/
cp -r /srv9_tmp1/tdethinne/data_to_coupled/plantparam $directory/CARAIB_couplage/
mv $str/*.dat $directory/CARAIB_couplage/clim/$count/
mv $str/*.res $directory/CARAIB_couplage/results/$count/
mv $str/man $directory/CARAIB_couplage/clim/$count/man
tar -czf $directory/CARAIB_couplage.tar.gz $directory/CARAIB_couplage/
\ No newline at end of file
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