diff --git a/couplage/data_to_copy/caraib_01_Iv_2020_Belgium_coupling.dat b/couplage/data_to_copy/caraib_01_Iv_2020_Belgium_coupling.dat index 03450f616bef60422d22cc9521dad2dbff886ea6..e45d6a7bec0997ae25488cbaba61a15a19d44f5b 100644 --- a/couplage/data_to_copy/caraib_01_Iv_2020_Belgium_coupling.dat +++ b/couplage/data_to_copy/caraib_01_Iv_2020_Belgium_coupling.dat @@ -1,186 +1,76 @@ -isteady,ny0max : 1 1 -readsteady,coupling: 0 1 -1 to call generator: 0 -ifrac (1=calc frac): 1 -ifrac_rd,ilai_rd : 0 0 -idayt,ifull,jclonly: 1 0 0 -ilu,imanag : 1 0 -ilusp_rd,isowd_rd : 0 0 -ncropvar,icvar_rd : 0 0 -ifire,iclim,ilgtree: 0 0 0 -jdwnCO2,jrd_accl : 2 2 -imig,isp,imig_rd : 0 6 0 ; isp= 6 or 8 (species which is dispersed) -nyrmax,ileap : 1 1 -itmt(too much time): 0 -nyrprt,nstprt : 0 0 -iread,iczon : 0 1 -idaily_in,idaily_ou: 1 1 -idtem,isol : 1 1 -pixel number : 10800 -igtyp,declg,declat : 0 0.06300 0.02000 -prec_co : 3.e-4 -ipar,exc,obl,xlsper: 0 0.016724 23.447 282.16 -nherb,nbush,ntree,n: 1 1 14 12 1 -fil ext inp weather:.dat -fil ext results :.res -soil texture :./CARAIB_couplage/clim/Belgium/ecotxt.dat -pixel corners :/-------- no file for pixelcorners.dat -climate data :/-------- no file for climate_data.dat -air temp (climatol):0 ./CARAIB_couplage/clim/Belgium/temyyyy.dat - units,netcdf : 0.0 1.0 0 &tem -precip (climatol):0 ./CARAIB_couplage/clim/Belgium/prcyyyy.dat - units,netcdf : 0.0 1.0 0 &prc -air temperature :1 ./CARAIB_couplage/clim/Belgium/tem - units,netcdf : 0.0 1.0 0 &tas -Max air temp. :1 ./CARAIB_couplage/clim/Belgium/tmax - units,netcdf : 0.0 1.0 0 &tasmax -Min air temp. :1 ./CARAIB_couplage/clim/Belgium/tmin - units,netcdf : 0.0 1.0 0 &tasmin -precipitation :1 ./CARAIB_couplage/clim/Belgium/prc - units,netcdf : 0.0 1.0 0 &pr -sunsh hr/solar fl :1 ./CARAIB_couplage/clim/Belgium/fsol - units,netcdf : 0.0 1.0 0 &rsds -air relat. humidity:1 ./CARAIB_couplage/clim/Belgium/rhu - units,netcdf : 0.0 1.0 0 &rhs -wind speed :1 ./CARAIB_couplage/clim/Belgium/wnd - units,netcdf : 0.0 1.0 0 &wind -management :0 /-------- no file for manag.dat -lightning data :0 ./CARAIB_couplage/clim/Belgium/lightning.dat -land use cover :0 ./CARAIB_couplage/clim/Belgium/land_use_caraib.dat -LU species rel abun:2 ./CARAIB_couplage/plantparam/frac_crop_elv -crop sowing dates :0 /-------- no file for sowing_dates.dat -crop cultivars :0 /-------- no file for cultivars_ric_20_6c05.dat -migration rate :0 /-------- no file for Heterogeneity_40.dat -species refugia :0 /-------- no file for Fagus_pa_10k.txt -path for generator :/raid/umccb/francois/gene/ -PFT alb zzra t1 t2 :./CARAIB_couplage/plantparam/species_ibm.dat -PFT tolerances :./CARAIB_couplage/plantparam/species_tol_t6.dat -PFT parameters :./CARAIB_couplage/plantparam/species_par.dat -PFT age class para :./CARAIB_couplage/plantparam/species_clas.dat -PFT C:N of veget :./CARAIB_couplage/plantparam/species_csurn.dat -PFT 1/gkfall :./CARAIB_couplage/plantparam/species_gk.dat -PFT gama1, gama2 :./CARAIB_couplage/plantparam/gama_soil.dat -PFT carb_init :./CARAIB_couplage/plantparam/species_carb.dat -crops seasonality :./CARAIB_couplage/plantparam/species_seas_t6c.dat -print clim tem :0 /no_climate_outputs/tem -print clim dte :0 /no_climate_outputs/dte -print clim prc :0 /no_climate_outputs/prc -print clim shr/fsol:0 /no_climate_outputs/shr -print clim rhu :0 /no_climate_outputs/rhu -print clim win :0 /no_climate_outputs/wnd -initial veget frac:./CARAIB_couplage/results/Belgium/frac -initial Min Max LAI:./CARAIB_couplage/results/Belgium/xlai_min_max -read initial cond :./CARAIB_couplage/results/Belgium/biomass -read lai limit :./CARAIB_couplage/results/Belgium/ylailim -read ini cond crops:./CARAIB_couplage/results/Belgium/cropino -read prev year CO2 :./CARAIB_couplage/results/Belgium/co2prev -read prev year temp:./CARAIB_couplage/results/Belgium/temprev -read prev year LU :./CARAIB_couplage/clim/Belgium/land_use_caraib.dat -initial propagation:/-------- no file for prop09999.res -initial side pres :/-------- no file for side09999.res -initial pixel pres :/-------- no file for pres09999.res -in/out climate zone:0 ./CARAIB_couplage/results/Belgium/zone1991.dat -in/out stoch.fields:./CARAIB_couplage/results/Belgium/stochas.gen -ibm results (full) :./CARAIB_couplage/results/Belgium/water.full -1st day of year res:./CARAIB_couplage/results/Belgium/biomass -monthly lai limit :./CARAIB_couplage/results/Belgium/ylailim -1st part crops :./CARAIB_couplage/results/Belgium/cropino -wri prev year CO2 :./CARAIB_couplage/results/Belgium/co2prev -wri prev year temp :./CARAIB_couplage/results/Belgium/temprev -results (test file):./CARAIB_couplage/results/Belgium/water.tes -test (problems) :./CARAIB_couplage/results/Belgium/caraib.problem -current pixel-date :./CARAIB_couplage/results/Belgium/water.time -annual hydr results:1 ./CARAIB_couplage/results/Belgium/water_yr -annual frc per pft :1 ./CARAIB_couplage/results/Belgium/frc -mon/day mean sw :1 ./CARAIB_couplage/results/Belgium/sw -mon/day mean sw(mm):1 ./CARAIB_couplage/results/Belgium/swmm -mon/day mean rtr :0 ./CARAIB_couplage/results/Belgium/rtr -mon/day mean pet :1 ./CARAIB_couplage/results/Belgium/pet -mon/day mean aet :1 ./CARAIB_couplage/results/Belgium/aet -mon/day mean totrun:1 ./CARAIB_couplage/results/Belgium/run -mon/day mean fsn :1 ./CARAIB_couplage/results/Belgium/fsn -mon/day mean snd :1 ./CARAIB_couplage/results/Belgium/snd -mon/day mean srun :1 ./CARAIB_couplage/results/Belgium/srun -mon/day mean drain :1 ./CARAIB_couplage/results/Belgium/drn -mon/day mean sv ev :0 ./CARAIB_couplage/results/Belgium/sve -mon/day mean int ev:1 ./CARAIB_couplage/results/Belgium/eint -mon/day mean transp:1 ./CARAIB_couplage/results/Belgium/etr -mon/day mean soilev:1 ./CARAIB_couplage/results/Belgium/eso -mon/day mean rbl :0 ./CARAIB_couplage/results/Belgium/rbl -mon/day mean albedo:1 ./CARAIB_couplage/results/Belgium/alb -mon/day mean albsv :1 ./CARAIB_couplage/results/Belgium/albsv -mon/day mean albs :1 ./CARAIB_couplage/results/Belgium/albs -mon/day mean albv :1 ./CARAIB_couplage/results/Belgium/albv -mon/day mean Rn :0 ./CARAIB_couplage/results/Belgium/rn -mon/day mean gr flx:0 ./CARAIB_couplage/results/Belgium/grf -mon/day mean Ts :1 ./CARAIB_couplage/results/Belgium/ts -mon/day mean fgs :1 ./CARAIB_couplage/results/Belgium/fgs -mon/day mean LAI(w):1 ./CARAIB_couplage/results/Belgium/lai -mon/day mean IRdown:1 ./CARAIB_couplage/results/Belgium/fird -mon/day mean H :1 ./CARAIB_couplage/results/Belgium/xh -mon/day mean LE :1 ./CARAIB_couplage/results/Belgium/xle -mon/day mean Fsol :1 ./CARAIB_couplage/results/Belgium/fsol -mon/day mean sn fal:0 ./CARAIB_couplage/results/Belgium/sf -mon/day mean sn ev :1 ./CARAIB_couplage/results/Belgium/sne -mon/day mean sn mel:0 ./CARAIB_couplage/results/Belgium/sml -mon/day mean emisf :1 ./CARAIB_couplage/results/Belgium/emisf -mon/day mean emins :1 ./CARAIB_couplage/results/Belgium/emisfns -mon/day mean z0tot :1 ./CARAIB_couplage/results/Belgium/z0 -mon/day mean biom :1 ./CARAIB_couplage/results/Belgium/biommth -mon/day mean gpp :1 ./CARAIB_couplage/results/Belgium/gppmth -mon/day mean Ra :1 ./CARAIB_couplage/results/Belgium/ramth -mon/day mean npp :1 ./CARAIB_couplage/results/Belgium/nppmth -mon/day mean nep :1 ./CARAIB_couplage/results/Belgium/nepmth -mon/day mean Rh :1 ./CARAIB_couplage/results/Belgium/rhmth -mon/day mean lai(C):1 ./CARAIB_couplage/results/Belgium/laimth -mon/day fire emi :0 ./CARAIB_couplage/results/Belgium/emifiremth -mon/day burned lit :0 ./CARAIB_couplage/results/Belgium/emiblitmth -mon/day mean nbp :1 ./CARAIB_couplage/results/Belgium/nbpmth -mon/day mean harv :1 ./CARAIB_couplage/results/Belgium/harvmth -mon/day mean fapar :1 ./CARAIB_couplage/results/Belgium/faparmth -veget cover frac :1 ./CARAIB_couplage/results/Belgium/frac -PFT npp :1 ./CARAIB_couplage/results/Belgium/npp -Rmin :0 ./CARAIB_couplage/results/Belgium/Rmin -PFT Min Max LAI :1 ./CARAIB_couplage/results/Belgium/xlai_min_max -PFT GPP :1 ./CARAIB_couplage/results/Belgium/gpp -PFT auto resp Ra :1 ./CARAIB_couplage/results/Belgium/ra -PFT fire emission :0 ./CARAIB_couplage/results/Belgium/emifire -Cveg :1 ./CARAIB_couplage/results/Belgium/Cveg -Csoil :1 ./CARAIB_couplage/results/Belgium/Csoil -C13 fractionation :0 ./CARAIB_couplage/results/Belgium/frcC13 -Mean LAI :1 ./CARAIB_couplage/results/Belgium/laimoy -Tmin :0 ./CARAIB_couplage/results/Belgium/Tdmin -Tc :0 ./CARAIB_couplage/results/Belgium/Tmmin -GDD :1 ./CARAIB_couplage/results/Belgium/gdd -probability of fire:0 ./CARAIB_couplage/results/Belgium/pfire -burned pix fraction:0 ./CARAIB_couplage/results/Belgium/fburn -burned area :1 ./CARAIB_couplage/results/Belgium/aburn -harvested biomass :0 ./CARAIB_couplage/results/Belgium/harvest -yield :1 ./CARAIB_couplage/results/Belgium/yield -aboveground biomass:1 ./CARAIB_couplage/results/Belgium/agbiom -aboveground biomass:1 ./CARAIB_couplage/results/Belgium/bgbiom -maturity date :1 ./CARAIB_couplage/results/Belgium/maturity -lucdfr (LU frac ch):1 ./CARAIB_couplage/results/Belgium/lucdfr -lucflx (emi & lit) :1 ./CARAIB_couplage/results/Belgium/lucflx -fire mort coef :0 ./CARAIB_couplage/results/Belgium/yfburn -temp mort coef :0 ./CARAIB_couplage/results/Belgium/ftomin -water mort coef :0 ./CARAIB_couplage/results/Belgium/ftotw -total mort coef :1 ./CARAIB_couplage/results/Belgium/ftot -gdd5 coef :1 ./CARAIB_couplage/results/Belgium/Fgdd5 -Tmmin coef :0 ./CARAIB_couplage/results/Belgium/FTmmin -watmin coef :0 ./CARAIB_couplage/results/Belgium/Fwatmin -propagation :0 ./CARAIB_couplage/results/Belgium/prop -pixel side pres :0 ./CARAIB_couplage/results/Belgium/side -pixel pres :0 ./CARAIB_couplage/results/Belgium/pres -year*pco2**nys**ipr_clim*iprt*filexto-(31-46)**filextlu-(48-63)*filexti-(65-184)*********************************************************************************************************idayct (186-191) -2010 388.57 0 0 1 2010 2010 2010 -2011 390.49 0 0 1 2011 2011 2011 -2012 392.52 0 0 1 2012 2012 2012 -2013 395.19 0 0 1 2013 2013 2013 -2014 397.12 0 0 1 2014 2014 2014 -2015 399.41 0 0 1 2015 2015 2015 -2016 402.86 0 0 1 2016 2016 2016 -2017 405.00 0 0 1 2017 2017 2017 -2018 407.39 0 0 1 2018 2018 2018 -2019 409.80 0 0 1 2019 2019 2019 -! +#!/bin/bash + +#Define your region +reg="EU" +#Define your domain +cod="x" +#Define your country +count="Belgium" +#Define the path to your copy of NESTOR domain +nest="/climato_tmp1/tdethinne/domains/NST.2018.08.01.00.EUa.nc" +#Define the path to your file necessary as Caraib Starting point +str="/climato_tmp1/tdethinne/srv9/init_data" + + +#+++++++++++++++++++++++++++++++++# +# do not edit after here # +#+++++++++++++++++++++++++++++++++# + +# Check if an argument is provided +if [ -z "$1" ]; then + echo "Usage: $0 <0 or 1>" + exit 1 +fi + +dom=$reg$cod + +directory=/climato_tmp1/$USER/MAR/out/$dom/ + +# Perform actions based on the argument +if [ "$1" -eq 0 ]; then + echo "The script will set your MAR/out/$dom/so it match the required shape and move the files" +fi + +if [ "$1" -eq 1 ]; then + echo " The script will set your MAR/out/$dom/so it match the required shape and move the files and compile the model" +fi + +# Copy the code of the coupling +echo "Copy of the code" +mkdir -p $directory/${cod}99/code +scp -r /climato_tmp1/tdethinne/MAR/src/MARCAR/* $directory/${cod}99/code +ln -s MAR_c01.exe $directory/${cod}99/code/MAR_${cod}99.exe + +if [ "$1" -eq 1 ]; then + echo "Compile the code" + $directory/${cod}99/code/COMPILE +fi + +#Recreate the CARAIB directories +mkdir -p $directory/CARAIB_couplage/ +mkdir -p $directory/CARAIB_couplage/clim/$count/ +mkdir -p $directory/CARAIB_couplage/ctrl/ +mkdir -p $directory/CARAIB_couplage/data/ +mkdir -p $directory/CARAIB_couplage/results/$count/ + +#Move the MAR results to a new place +echo "move the MAR results to another place" +mkdir -p $directory/${cod}99/mar/ +mkdir -p $directory/${cod}99/caraib/ + +mv 19* $directory/${cod}99/mar/ +mv 20* $directory/${cod}99/mar/ +mv 21* $directory/${cod}99/mar/ + +echo "Copy the necessary files" +cp $nest $directory/CARAIB_couplage/clim/$count/ + +cp /srv9_tmp1/tdethinne/data_to_coupled/*.dat $directory/CARAIB_couplage/ctrl/ +cp /srv9_tmp1/tdethinne/data_to_coupled/ecotx.1x1 $directory/CARAIB_couplage/data/ +cp -r /srv9_tmp1/tdethinne/data_to_coupled/plantparam $directory/CARAIB_couplage/ + +mv $str/*.dat $directory/CARAIB_couplage/clim/$count/ +mv $str/*.res $directory/CARAIB_couplage/results/$count/ +mv $str/man $directory/CARAIB_couplage/clim/$count/man + +tar -czf $directory/CARAIB_couplage.tar.gz $directory/CARAIB_couplage/ \ No newline at end of file