Skip to content

Changes

Page history
update platform-shared description authored by Mayer Alice's avatar Mayer Alice
Hide whitespace changes
Inline Side-by-side
mass-storage/mass-storage-structure-organisation.md
View page @ f4845a9f
......@@ -91,8 +91,8 @@ graph TB
style S fill:#d2e6f0, stroke:#91c5df, stroke-width:2px
style T fill:#d2e6f0, stroke:#91c5df, stroke-width:2px
style U fill:#d2e6f0, stroke:#91c5df, stroke-width:2px
style V fill:#d2e6f0, stroke:#91c5df, stroke-width:2px
style W fill:#d2e6f0, stroke:#91c5df, stroke-width:2px
style V fill:#cfd2fa, stroke:#878ef5, stroke-width:2px
style W fill:#dffccc, stroke:#5cb821, stroke-width:2px
style X fill:#d2e6f0, stroke:#91c5df, stroke-width:2px
style K fill:#d2e6f0, stroke:#91c5df, stroke-width:2px
style L fill:#d2e6f0, stroke:#91c5df, stroke-width:2px
......@@ -170,11 +170,13 @@ Space available in groups and projects folders belonging to a given laboratory i
# Platform-shared folders
Data generated by the different GIGA platforms can be shared with the members of a group via a PLATFORMS folder situated inside the group folder. This PLATFORMS folder is created upon request by the PI. It will contain one subfolder per platform and can be subdivided further with one subfolder per project so that each user knows exactly where to find the raw data associated with a given project. GIGA platforms will only have reading/writing privileges to this shared folder, with no access to the associated project folders.
Data generated by the different GIGA platforms can be shared with the members of a group via a PLATFORMS folder situated inside the group folder. This PLATFORMS folder is created upon request by the PI. It will contain one subfolder per platform and can be subdivided further according to needs. GIGA platforms will only have reading/writing privileges to this shared folder, with no access to the associated project folders.
Users can either leave all data transferred by the platforms in the PLATFORMS folder or move them to the corresponding Project folder. Of note, most journals will ask for these raw data to be uploaded on a server before to accept any publication relative to them, so it’s extremely important to organise and annotate them properly to be able to retrieve them when needed. To avoid having multiple copies of large files, the platforms won’t keep a copy of these raw data. It’s the PI responsibility to make sure precious files are
stored and annotated correctly.
Because raw data are so precious, by default users won't be able to move or modify data shared by the Genomics platform. Users can create symlinks to these files in any other location if they want to have access to them from there. They will need to ask the platform if they want to delete the data or to move them somewhere else.
The whole platform-shared folder is considered to be part of the group folder. Hence, it is included in the calculation of the size quota and its content is under the responsibility of the group folder PI.
......@@ -186,7 +188,7 @@ The whole platform-shared folder is considered to be part of the group folder. H
|------------|-------------------------------------------------------------------------------------------------------------------------------|--------------|------------|
| Home | Access point to server + storage of documents not linked to a specific project | By default | user |
| Resources | Reference Genomes, Singularity containers and other shared resources | By default | general |
| Projects | Data and analysis related to a specific project, accessible via the Research link in the user's home, following the structure detailed [here](mass-storage/mass-storage-structure-organisation#tree-structure) | Upon request | laboratory |
| Projects | Data and analysis related to a specific project, accessible via the Research link in the user's home, following the structure detailed [here](mass-storage/mass-storage-URT) | Upon request | laboratory |
| SHARE | Data shared by members of a group working on different projects, accessible via the Research link, in the group folder, next to the Project folders | Upon request | laboratory |
| PLATFORMS | Data shared by the platforms, accessible via the Research link, in the group folder, next to the Project folders | Upon request | laboratory |
......@@ -196,7 +198,7 @@ The whole platform-shared folder is considered to be part of the group folder. H
| --------- | ------------------------------------------------------------ | ------------ | ---------- |
| Home | Access point to server + storage of documents not linked to a specific project | By default | user |
| Resources | Reference Genomes, Singularity containers and other shared resources | By default | general |
| Group | Each platform has a group folder where to store data they are processing. They are accessible via the Platforms link in the user's home, following the structure detailed [here](mass-storage/mass-storage-structure-organisation#tree-structure) | Upon request | platform |
| Group | Each platform has a group folder where to store data they are processing. They are accessible via the Platforms link in the user's home, following the structure detailed [here](mass-storage/mass-storage-PTF) | Upon request | platform |
| PLATFORMS | Data shared with members of research groups, accessible via the Research link, in the group folder, next to the Projects folder | Upon request | laboratory |
#### Folders permissions:
......@@ -207,5 +209,5 @@ The whole platform-shared folder is considered to be part of the group folder. H
| Home | read, write, execute | no access | no access | no access | no access |
| Resources | read, execute | read, execute | read, execute | read, execute | read, write, execute |
| Project | read, write, execute | read, write, execute | no access | no access | no access |
| PLATFORMS | read, write, execute | read, write, execute | read, write, execute | no access | read, write, execute |
| PLATFORMS | read, (write), execute | read, (write), execute | read, (write), execute | no access | read, write, execute |
| SHARE | read, write, execute | read, write, execute | read, write, execute | no access | no access |
\ No newline at end of file