Version 2.0.0

Waves 2.0.0

Context

This MR removes the compatibility with python 2 and adds the capability to easily link another code to waves using CMake, as well as a feature to read results from the disk.

Changes

• Remove all import from the future libs of python, the code is now compatible with python 3 only
• Add a waves-config file allowing to easily find and link waves to another code using CMake
• Add a load method to GmshImport to read results from the disk (restart/checkpoint feature)
• Add a UnitTest class to test the classes and methods in tbox which can not be accessed directly through python
• Rename katropton to katoptron, although this was done in !59 (merged), it was not referenced by a tag
• Various minor cleaning and bugfixing

Comments

• The GmshImport and GmshExport classes need to be upgraded to deal with gmsh format 4, as well as to read and write data in binary
• The new method GmshImport::load contains a lot of repeated code, similarly to GmshExport::save, there might be a way to improve this

Tests

Passed on ubuntu20.04 (python 3.8.2), and msys2 (python 3.8.1).

README.md

@@ -23,6 +23,7 @@ Additional features:
   - [x] [vtk](http://www.vtk.org/)/[PyQt](https://riverbankcomputing.com/software/pyqt/intro) support for post processing and basic GUI
   - [x] [OpenBLAS](http://www.openblas.net/) or [Intel MKL](https://software.intel.com/en-us/intel-mkl) support
   - [x] [Eigen3](http://eigen.tuxfamily.org/index.php?title=Main_Page) support for linear algebra
+     - [Intel Pardiso](https://software.intel.com/content/www/us/en/develop/documentation/mkl-developer-reference-c/top/sparse-solver-routines/intel-mkl-pardiso-parallel-direct-sparse-solver-interface/pardiso.html) support
      - [MUMPS](http://mumps.enseeiht.fr/) support
   - [x] [TBB](https://www.threadingbuildingblocks.org/) support for multithreading
   - [x] [mpi4py](https://bitbucket.org/mpi4py/mpi4py) support for parallelization
@@ -34,10 +35,10 @@ Detailed build instructions can be found in the [wiki](https://gitlab.uliege.be/
 
 ## References
 
-Kim thesis
+Liegeois Kim, [GMRES with embedded ensemble propagation for the efficient solution of parametric linear systems in uncertainty quantification of computational models with application to the thermomechanical simulation of an ITER front mirror](http://hdl.handle.net/2268/249334), 2020.
 
 Adrien thesis
 
-Kim Paper
+Liegeois K., Boman R., Phipps E., Wiesner T., and Arnst M., [GMRES with embedded ensemble propagation for the efficient solution of parametric linear systems in uncertainty quantification of computational models](http://hdl.handle.net/2268/248201), Computer Methods in Applied Mechanics and Engineering, Vol. 369, 2020.
 
 Crovato A., Boman R., Guner H., Terrapon V., Dimitriadis G., Almeida H., Prado A., Breviglieri C., Cabral P., and Silva, G., [A Full Potential Static Aeroelastic Solver for Preliminary Aircraft Design](http://hdl.handle.net/2268/237955), 18th International Forum on Aeroelasticity and Structural Dynamics, IFASD 2019.