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Pour rappel, le service sera inaccessible ce lundi 05/05/25 midi pour raison de mise à jour.
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Pierre Tocquin
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Created with Raphaël 2.2.0
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feat(internode_analysis,manual_editing): enhance internode processing and add manual editing tool
develop
develop
fix(process_pipeline): handle large images by splitting before saving
fix(segmentation): correct edge detection in segmentation mask
feat(config): add configurable segment and image size limits
feat(dependencies): add imagecodecs to requirements.txt
feat(process_pipeline): add subsampling for large segmented images
chore(logging): change log level from debug to info
refactor(pipeline): remove unused parameter from segmentation correction
fix(config): remove `closing_kernel_size` from required keys
refactor(segmentation): simplify process by removing unused code
fix(pipeline): correct binary mask initialization for contour detection
fix(segmentation): add continue statement to handle unmatched clusters
tentative fix
refactor(segmentation): simplify cluster filtering logic
fix(segmentation): reset bad_cluster flag inside loop
refactor(process_pipeline): improve readability of cluster check condition
refactor(segmentation): remove unused bad_cluster variable
refactor(segmentation): revise handling of small and invalid clusters
fix(segmentation): handle clusters with incorrect aspect ratios
refactor(segmentation): update red cluster detection and comment out unused logic
refactor(segmentation): simplify nerve segment fusion using distance transform
refactor(segmentation): replace cv2.pointPolygonTest with custom distance function
refactor(pipeline): improve nerve segmentation with contour merging
chore(cleanup): remove internode filtering script
feat(internode-filtering): add new script for internode region analysis
fix(segmentation): correct conversion logic for small red clusters
feat(image-analysis): add internode analysis script
feat(logging): integrate logging system into process pipeline
refactor(process_pipeline): comment out resource cleanup and logging
refactor(process): remove unused blue region filling code
chore(logging): add debug prints to track segmentation process
feat(memory-management): add memory usage logging and resource cleanup
fix(pipeline): correct variable name for image deletion
refactor(pipeline): replace resizing with image-saving logic
feat(image-processing): handle large image resizing with patch processing
feat(image-processing): switch from cv2 to tiff for image writing
fix(pipeline): remove segmented TIFF file after processing
feat(docs): add initial README for CZI to Ilastik processing pipeline
feat(process): enhance segmentation correction with additional parameters
refactor(process_pipeline): use filename without extension for TIFF output
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