Ribeiro Monteiro Silvia requested to merge develop into master Aug 27, 2025

2025-08-27 v3.1

Hotfix gContext
Hotfix .extractAnnot
Hotfix .parseGFF
Hotfix GFFtoDT
gContext: Addition of empty output when no sequence found
gContext: Addition of new region to terminator region -> region between beginning or end of cluster and a stop codon
gContext: Addition of new column 'max_matrix' in result output -> gives the maximum scoring value for the given PWM
Changing regulatory region limits (-400 to +100) and co-transcripts distances (-90 to +170)