Skip to content

Dev oli merge : versions auto detection

Renson Olivier requested to merge dev_oli into main
  • Auto detection of software versions at runtime.
  • Disable multiQC auto parsing.
  • Updated workflow diagram in README.
  • Downstream_r process moved to quantif workflow and using input args instead of building script at runtime

Test commands :

  • cd /scratch/GIGA/GROUP/giga-ptf_gen_hts/dev/rnaseq_dev:
  • nextflow run rnaseq_main.nf -profile standard,singularity,slurm,human_38_103 --outdir test_data/out_auto --design_csv test_data/test_design.csv

Merge request reports