Update master

Created by: acrovato

Context and description

This PR consists in bringing the latest development into master. They consist of the following:

• class enum ELTYPE member names have been modified from EL_NAME to NAME
• override keyword have been added for flow module
• flow module and part of tbox module have been documented
• Various refactoring for the following classes:
  • Pt
  • Link
  • MshDeformation
  • flow::Wake
  • flow::Kutta
• CMakeLists have been updated so that each module finds its own required packages. This is a first implementation but it can be further improved
• nogui options has been added to some fdtd module testcase to supress plot output when using ctest. This is a temporary solution
• Add sph test
• Minor changes and cleaning

Warning

Kim features (mrstlnos) have not been built and are more than likely completely broken...

Checklist

• compilation (ubuntu)
• compilation (windows)
• compilation (macOS)
• battery testing (ubuntu)
• battery testing (windows)
• battery testing (macOS)
• formatting

fdtd/tests/fdtd1d_1.py

@@ -4,6 +4,7 @@
 import math
 import numpy as np
 import matplotlib.pyplot as plt
+from fwk.wutils import parseargs
 
 SIZE=200
 
@@ -25,11 +26,13 @@ for qTime in xrange(maxTime):
     #print(ez[50])
     result[qTime] = ez[50]
 
-
-plt.plot(result)
-plt.title('Example p42')
-plt.xlabel('time step')
-plt.ylabel('Ez[50]')
-plt.ylim(-1,1)
-plt.grid(True)
-plt.show()
+#
+args = parseargs()
+if not args.nogui:
+    plt.plot(result)
+    plt.title('Example p42')
+    plt.xlabel('time step')
+    plt.ylabel('Ez[50]')
+    plt.ylim(-1,1)
+    plt.grid(True)
+    plt.show()