Update waves

Created by: acrovato

Context

This pull request brings the last developments from the flow module as well as some upgrade to waves.

Major changes in flow

• flow is now able to compute 3D flows
• The Jacobian (tangent) matrix for the Netwton method is now fully analytical
• The adjacent elements identification is now based on ```std::unordered_set````

Major changes in waves

• tbox and fwk are now included in a namespace
• waves is now fully included in a namespace
• All elements now have a private memory (Mem) which can be publicly accessed
• All elements now have a cache including Gauss points (Gauss) which can be publicly accessed
• MshDeformation now uses a linear elasticity solver
• MshCrack class implemented (creates duplicate internal boundaries in meshes)

Test

The ctest battery has been run on gaston, 100% tests passed under 110s.

Future work

• Use automated indentation rules for the whole code
• Move methods using VTK outside of MshData
• Clean tbox (mainly MshData, Tri3, Tera4 and Hex8)

CMakeLists.txt

@@ -30,15 +30,15 @@ OPTION(WAVES_USE_FDTD        "Compile fdtd module"             ON)
 OPTION(WAVES_USE_FLOW        "Compile flow module"             ON)
 OPTION(WAVES_USE_HEAT        "Compile heat module"             ON)
 OPTION(WAVES_USE_MIRRORS     "Compile mirrors module"          ON)
-OPTION(WAVES_USE_MRSTLNOS    "Compile mrstlnos module"         OFF)
+OPTION(WAVES_USE_MRSTLNOS    "Compile mrstlnos module"         ON)
 OPTION(WAVES_USE_PARAMS      "Compile params module"           ON)
 OPTION(WAVES_USE_SPH         "Compile sph module"              ON)
-OPTION(WAVES_USE_TLNOS       "Compile tlnos module"            OFF)
+OPTION(WAVES_USE_TLNOS       "Compile tlnos module"            ON)
 OPTION(WAVES_USE_WAVES       "Compile waves module"            ON)
 
 # todo: should be removed
-OPTION(TBOX_HAS_VTK          "Compile VTK-related fcts in tbox" OFF)
-OPTION(WAVES_USE_TBB          "Compile with TBB" ON)
+OPTION(TBOX_HAS_VTK          "Compile VTK-related fcts in tbox" ON)
+OPTION(WAVES_USE_TBB         "Compile with TBB" ON)
 
 # macros/fcts
 INCLUDE(fwkMacros)