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GIGA-CRC Human Imaging
Public
BIDStools
BIDSme
bidsme_examples
Commits
54e38214
Commit
54e38214
authored
5 years ago
by
Beliy Nikita
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added map for ru without plugins
parent
40bbc77a
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example1/resources/map/bidsmap_noPlugin.yaml
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54e38214
Options
:
version
:
2.3.1
bidsignore
:
[]
PlugIns
:
path
:
~
options
:
{}
MRI
:
Nifti_SPM12
:
__ignore__
:
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-HCL/MRI/001-localizer/s1904-0001-00001-000001-01.nii
checked
:
true
suffix
:
'
'
attributes
:
ProtocolName
:
'
localizer'
bids
:
!!omap
[]
json
:
!!omap
[]
func
:
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-HCL/MRI/002-cmrr_mbep2d_bold_mb2_invertpe/f1904-0002-00001-000001-01.nii
example
:
func/sub-003_ses-HCL_task-nBack_dir-PA_run-1_bold
checked
:
true
suffix
:
bold
attributes
:
ProtocolName
:
cmrr_mbep2d_bold_mb2_invertpe
ImageType
:
ORIGINAL\\PRIMARY\\M\\MB\\ND\\MOSAIC
SeriesNumber
:
2
bids
:
!!omap
-
dir
:
PA
-
task
:
nBack
-
acq
:
~
-
ce
:
~
-
rec
:
~
-
run
:
<AcquisitionNumber>
-
echo
:
~
json
:
!!omap
-
TaskName
:
<<bids:task>>
-
Instructions
:
"
"
-
TaskDescription
:
"
"
-
CogAtlasID
:
"
"
-
CogPOID
:
"
"
-
RepetitionTime
:
<time3:RepetitionTime>
-
NumberOfVolumesDiscardedByScanner
:
"
"
-
NumberOfVolumesDiscardedByUser
:
"
"
-
DelayTime
:
0
-
DelayAfterTrigger
:
"
"
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-HCL/MRI/006-cmrr_mbep2d_bold_mb2_invertpe/f1904-0006-00001-000001-01.nii
example
:
func/sub-003_ses-HCL_task-rest_dir-PA_run-1_bold
checked
:
true
suffix
:
bold
attributes
:
ProtocolName
:
cmrr_mbep2d_bold_mb2_invertpe
ImageType
:
ORIGINAL\\PRIMARY\\M\\MB\\ND\\MOSAIC
SeriesNumber
:
6
bids
:
!!omap
-
dir
:
PA
-
task
:
rest
-
acq
:
~
-
ce
:
~
-
rec
:
~
-
run
:
<AcquisitionNumber>
-
echo
:
~
json
:
!!omap
-
TaskName
:
<<bids:task>>
-
Instructions
:
"
"
-
TaskDescription
:
"
"
-
CogAtlasID
:
"
"
-
CogPOID
:
"
"
-
RepetitionTime
:
<time3:RepetitionTime>
-
NumberOfVolumesDiscardedByScanner
:
"
"
-
NumberOfVolumesDiscardedByUser
:
"
"
-
DelayTime
:
0
-
DelayAfterTrigger
:
"
"
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-HCL/MRI/004-cmrr_mbep2d_bold_mb2_task_fat/f1904-0004-00001-000001-01.nii
example
:
func/sub-003_ses-HCL_task-nBack_dir-AP_run-1_bold
checked
:
true
suffix
:
bold
attributes
:
ProtocolName
:
cmrr_mbep2d_bold_mb2_task_fat
ImageType
:
ORIGINAL\\PRIMARY\\M\\MB\\ND\\MOSAIC
bids
:
!!omap
-
dir
:
AP
-
task
:
nBack
-
acq
:
~
-
ce
:
~
-
rec
:
~
-
run
:
<AcquisitionNumber>
-
echo
:
~
json
:
!!omap
-
TaskName
:
<<bids:task>>
-
Instructions
:
"
"
-
TaskDescription
:
"
"
-
CogAtlasID
:
"
"
-
CogPOID
:
"
"
-
RepetitionTime
:
<time3:RepetitionTime>
-
NumberOfVolumesDiscardedByScanner
:
"
"
-
NumberOfVolumesDiscardedByUser
:
"
"
-
DelayTime
:
0
-
DelayAfterTrigger
:
"
"
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-HCL/MRI/008-cmrr_mbep2d_bold_mb2_rest/f1904-0008-00001-000001-01.nii
example
:
func/sub-003_ses-HCL_task-rest_dir-AP_run-1_bold
checked
:
true
suffix
:
bold
attributes
:
ProtocolName
:
cmrr_mbep2d_bold_mb2_rest
ImageType
:
ORIGINAL\\PRIMARY\\M\\MB\\ND\\MOSAIC
bids
:
!!omap
-
dir
:
AP
-
task
:
rest
-
acq
:
~
-
ce
:
~
-
rec
:
~
-
run
:
<AcquisitionNumber>
-
echo
:
~
json
:
!!omap
-
TaskName
:
<<bids:task>>
-
Instructions
:
"
"
-
TaskDescription
:
"
"
-
CogAtlasID
:
"
"
-
CogPOID
:
"
"
-
RepetitionTime
:
<time3:RepetitionTime>
-
NumberOfVolumesDiscardedByScanner
:
"
"
-
NumberOfVolumesDiscardedByUser
:
"
"
-
DelayTime
:
0
-
DelayAfterTrigger
:
"
"
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-LCL/MRI/004-cmrr_mbep2d_bold_mb2_task_nfat/f1894-0004-00001-000001-01.nii
example
:
func/sub-003_ses-LCL_task-nBack_dir-AP_run-1_bold
checked
:
true
suffix
:
bold
attributes
:
ProtocolName
:
cmrr_mbep2d_bold_mb2_task_nfat
ImageType
:
ORIGINAL\\PRIMARY\\M\\MB\\ND\\MOSAIC
bids
:
!!omap
-
dir
:
AP
-
task
:
nBack
-
acq
:
~
-
ce
:
~
-
rec
:
~
-
run
:
<AcquisitionNumber>
-
echo
:
~
json
:
!!omap
-
TaskName
:
<<bids:task>>
-
Instructions
:
"
"
-
TaskDescription
:
"
"
-
CogAtlasID
:
"
"
-
CogPOID
:
"
"
-
RepetitionTime
:
<time3:RepetitionTime>
-
NumberOfVolumesDiscardedByScanner
:
"
"
-
NumberOfVolumesDiscardedByUser
:
"
"
-
DelayTime
:
0
-
DelayAfterTrigger
:
"
"
fmap
:
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-HCL/MRI/010-gre_field_mapping/s1904-0010-00001-000001-01.nii
example
:
fmap/sub-003_ses-HCL_magnitude1
checked
:
true
suffix
:
magnitude<EchoNumbers>
attributes
:
ProtocolName
:
'
gre_field_mapping'
ImageType
:
'
ORIGINAL\\PRIMARY\\M\\ND'
SeriesNumber
:
10
bids
:
!!omap
-
acq
:
~
-
ce
:
~
-
dir
:
~
-
run
:
~
json
:
!!omap
-
EchoTime
:
<time3:EchoTime>
-
IntendedFor
:
-
"
func/<<subject>>_<<session>>_task-nBack_bold.nii"
-
"
func/<<subject>>_<<session>>_task-rest_bold.nii"
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/015-gre_field_mapping/s1905-0015-00001-000001-01.nii
example
:
fmap/sub-003_ses-STROOP_magnitude1
checked
:
true
suffix
:
magnitude<EchoNumbers>
attributes
:
ProtocolName
:
'
gre_field_mapping'
ImageType
:
'
ORIGINAL\\PRIMARY\\M\\ND'
SeriesNumber
:
15
bids
:
!!omap
-
acq
:
~
-
ce
:
~
-
dir
:
~
-
run
:
~
json
:
!!omap
-
EchoTime
:
<time3:EchoTime>
-
IntendedFor
:
-
"
anat/<<subject>>_<<session>>_acq-PDw_echo-*_MPM.nii"
-
"
anat/<<subject>>_<<session>>_acq-MTw_echo-*_MPM.nii"
-
"
anat/<<subject>>_<<session>>_acq-T1w_echo-*_MPM.nii"
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-HCL/MRI/011-gre_field_mapping/s1904-0011-00001-000001-02.nii
example
:
fmap/sub-003_ses-HCL_phasediff
checked
:
true
suffix
:
phasediff
attributes
:
ProtocolName
:
'
gre_field_mapping'
ImageType
:
'
ORIGINAL\\PRIMARY\\P\\ND'
SeriesNumber
:
11
bids
:
!!omap
-
acq
:
~
-
ce
:
~
-
dir
:
~
-
run
:
~
json
:
!!omap
-
EchoTime
:
~
-
EchoTime1
:
<time6:CSASeriesHeaderInfo/MrPhoenixProtocol/alTE/0>
-
EchoTime2
:
<time6:CSASeriesHeaderInfo/MrPhoenixProtocol/alTE/1>
-
IntendedFor
:
-
"
func/<<subject>>_<<session>>_task-nBack_bold.nii"
-
"
func/<<subject>>_<<session>>_task-rest_bold.nii"
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/016-gre_field_mapping/s1905-0016-00001-000001-02.nii
example
:
fmap/sub-003_ses-STROOP_phasediff
checked
:
true
suffix
:
phasediff
attributes
:
ProtocolName
:
'
gre_field_mapping'
ImageType
:
'
ORIGINAL\\PRIMARY\\P\\ND'
SeriesNumber
:
16
bids
:
!!omap
-
acq
:
~
-
ce
:
~
-
dir
:
~
-
run
:
~
json
:
!!omap
-
EchoTime
:
~
-
EchoTime1
:
<time6:CSASeriesHeaderInfo/MrPhoenixProtocol/alTE/0>
-
EchoTime2
:
<time6:CSASeriesHeaderInfo/MrPhoenixProtocol/alTE/1>
-
IntendedFor
:
-
"
anat/<<subject>>_<<session>>_acq-PDw_echo-*_MPM.nii"
-
"
anat/<<subject>>_<<session>>_acq-MTw_echo-*_MPM.nii"
-
"
anat/<<subject>>_<<session>>_acq-T1w_echo-*_MPM.nii"
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/002-al_mtflash3d_sensArray/s1905-0002-00001-000032-01.nii
example
:
fmap/sub-003_ses-STROOP_acq-HeadPDw_B1minus
checked
:
true
suffix
:
B1minus
attributes
:
ProtocolName
:
'
al_mtflash3d_sensArray'
SeriesNumber
:
2
bids
:
!!omap
-
acq
:
HeadPDw
-
mod
:
~
json
:
!!omap
-
EchoTime
:
<time3:EchoTime>
-
IntendedFor
:
-
"
anat/<<subject>>_<<session>>_acq-<<bids:mod>>_echo-*_MPM.nii"
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/003-al_mtflash3d_sensBody/s1905-0003-00001-000032-01.nii
example
:
fmap/sub-003_ses-STROOP_acq-BodyPDw_B1minus
checked
:
true
suffix
:
B1minus
attributes
:
ProtocolName
:
'
al_mtflash3d_sensBody'
SeriesNumber
:
3
bids
:
!!omap
-
acq
:
BodyPDw
-
mod
:
~
json
:
!!omap
-
EchoTime
:
<time3:EchoTime>
-
IntendedFor
:
-
"
anat/<<subject>>_<<session>>_acq-<<bids:mod>>_echo-*_MPM.nii"
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/014-al_B1mapping/s1905-0014-00001-000001-01.nii
example
:
fmap/sub-003_ses-STROOP_echo-1_fa-1_B1plus
checked
:
true
suffix
:
B1plus
attributes
:
ProtocolName
:
'
al_B1mapping'
bids
:
!!omap
-
echo
:
<EchoNumbers>
-
fa
:
<AcquisitionNumber>
json
:
!!omap
-
EchoTime
:
<time3:EchoTime>
-
B1mapNominalFAValues
:
<B1mapNominalFAValues>
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/006-al_mtflash3d_sensArray/s1905-0006-00001-000032-01.nii
example
:
fmap/sub-003_ses-STROOP_acq-HeadT1w_B1minus
checked
:
true
suffix
:
B1minus
attributes
:
ProtocolName
:
'
al_mtflash3d_sensArray'
SeriesNumber
:
6
bids
:
!!omap
-
acq
:
HeadT1w
-
mod
:
~
json
:
!!omap
-
EchoTime
:
<time3:EchoTime>
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/007-al_mtflash3d_sensBody/s1905-0007-00001-000032-01.nii
example
:
fmap/sub-003_ses-STROOP_acq-BodyT1w_B1minus
checked
:
true
suffix
:
B1minus
attributes
:
ProtocolName
:
'
al_mtflash3d_sensBody'
SeriesNumber
:
7
bids
:
!!omap
-
acq
:
BodyT1w
-
mod
:
~
json
:
!!omap
-
IntendedFor
:
-
"
anat/<<subject>>_<<session>>_acq-<<bids:mod>>_echo-*_MPM.nii"
-
EchoTime
:
<time3:EchoTime>
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/010-al_mtflash3d_sensArray/s1905-0010-00001-000032-01.nii
example
:
fmap/sub-003_ses-STROOP_acq-HeadMTw_B1minus
checked
:
true
suffix
:
B1minus
attributes
:
ProtocolName
:
'
al_mtflash3d_sensArray'
SeriesNumber
:
10
bids
:
!!omap
-
acq
:
HeadMTw
-
mod
:
~
json
:
!!omap
-
IntendedFor
:
-
"
anat/<<subject>>_<<session>>_acq-<<bids:mod>>_echo-*_MPM.nii"
-
EchoTime
:
<time3:EchoTime>
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/011-al_mtflash3d_sensBody/s1905-0011-00001-000032-01.nii
example
:
fmap/sub-003_ses-STROOP_acq-BodyMTw_B1minus
checked
:
true
suffix
:
B1minus
attributes
:
ProtocolName
:
'
al_mtflash3d_sensBody'
SeriesNumber
:
11
bids
:
!!omap
-
acq
:
BodyMTw
-
mod
:
~
json
:
!!omap
-
IntendedFor
:
-
"
anat/<<subject>>_<<session>>_acq-<<bids:mod>>_echo-*_MPM.nii"
-
EchoTime
:
<time3:EchoTime>
dwi
:
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-HCL/MRI/012-cmrr_mbep2d_diff_NODDI_invertpe/s1904-0012-00001-000001-01.nii
example
:
dwi/sub-003_ses-HCL_acq-RF_dir-PA_run-1_dwi
checked
:
true
suffix
:
dwi
attributes
:
ProtocolName
:
cmrr_mbep2d_diff_NODDI_invertpe
bids
:
!!omap
-
dir
:
PA
-
acq
:
RF
-
run
:
<AcquisitionNumber>
json
:
!!omap
[]
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-HCL/MRI/013-cmrr_mbep2d_diff_NODDI/f1904-0013-00001-000001-01.nii
example
:
dwi/sub-003_ses-HCL_acq-RF_dir-AP_run-1_dwi
checked
:
true
suffix
:
dwi
attributes
:
ProtocolName
:
cmrr_mbep2d_diff_NODDI
bids
:
!!omap
-
dir
:
AP
-
acq
:
RF
-
run
:
<AcquisitionNumber>
json
:
!!omap
[]
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-HCL/MRI/014-cmrr_mbep2d_diff_NODDI_noise/s1904-0014-00001-000001-01.nii
example
:
dwi/sub-003_ses-HCL_acq-noRF_dir-AP_run-1_dwi
checked
:
true
suffix
:
dwi
attributes
:
ProtocolName
:
cmrr_mbep2d_diff_NODDI_noise
bids
:
!!omap
-
dir
:
AP
-
acq
:
noRF
-
run
:
<AcquisitionNumber>
json
:
!!omap
[]
anat
:
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-LCL/MRI/012-t1_mpr_sag_p2_iso/s1894-0012-00001-000224-01.nii
example
:
anat/sub-003_ses-LCL_T1w
checked
:
true
suffix
:
T1w
attributes
:
ProtocolName
:
t1_mpr_sag_p2_iso
bids
:
!!omap
-
acq
:
~
-
ce
:
~
-
rec
:
~
-
run
:
~
-
mod
:
~
json
:
!!omap
-
ContrastBolusIngredient
:
~
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-LCL/MRI/013-t2_spc_da-fl_sag_p2_iso/s1894-0013-00001-000192-01.nii
example
:
anat/sub-003_ses-LCL_FLAIR
checked
:
true
suffix
:
FLAIR
attributes
:
ProtocolName
:
'
t2_spc_da-fl_sag_p2_iso'
bids
:
!!omap
-
acq
:
~
-
ce
:
~
-
rec
:
~
-
run
:
~
-
mod
:
~
json
:
!!omap
-
ContrastBolusIngredient
:
~
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/004-al_mtflash3d_PDw/s1905-0004-00001-000176-01.nii
example
:
anat/sub-003_ses-STROOP_acq-PDw_part-mag_echo-1_MPM
checked
:
true
suffix
:
MPM
attributes
:
ProtocolName
:
'
al_mtflash3d_PDw'
ImageType
:
'
ORIGINAL\\PRIMARY\\M\\ND'
bids
:
!!omap
-
acq
:
PDw
-
ce
:
~
-
rec
:
~
-
part
:
mag
-
run
:
~
-
echo
:
<EchoNumbers>
-
mod
:
~
json
:
!!omap
-
MTState
:
"
Off"
-
ContrastBolusIngredient
:
~
-
EchoTime
:
<time3:EchoTime>
-
RepetitionTime
:
<time3:RepetitionTime>
-
FlipAngle
:
<FlipAngle>
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/008-al_mtflash3d_T1w/s1905-0008-00001-000176-01.nii
example
:
anat/sub-003_ses-STROOP_acq-T1w_part-mag_echo-1_MPM
checked
:
true
suffix
:
MPM
attributes
:
ProtocolName
:
al_mtflash3d_T1w
ImageType
:
'
ORIGINAL\\PRIMARY\\M\\ND'
bids
:
!!omap
-
acq
:
T1w
-
part
:
mag
-
ce
:
~
-
rec
:
~
-
run
:
~
-
mod
:
~
-
echo
:
<EchoNumbers>
json
:
!!omap
-
ContrastBolusIngredient
:
~
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/012-al_mtflash3d_MTw/s1905-0012-00001-000176-01.nii
example
:
anat/sub-003_ses-STROOP_acq-MTw_part-mag_echo-1_MPM
checked
:
true
suffix
:
MPM
attributes
:
ProtocolName
:
'
al_mtflash3d_MTw'
ImageType
:
'
ORIGINAL\\PRIMARY\\M\\ND'
bids
:
!!omap
-
acq
:
MTw
-
ce
:
~
-
rec
:
~
-
part
:
mag
-
run
:
~
-
echo
:
<EchoNumbers>
-
mod
:
~
json
:
!!omap
-
MTState
:
"
On"
-
ContrastBolusIngredient
:
~
-
EchoTime
:
<time3:EchoTime>
-
RepetitionTime
:
<time3:RepetitionTime>
-
FlipAngle
:
<FlipAngle>
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/005-al_mtflash3d_PDw/s1905-0005-00001-000176-01.nii
example
:
anat/sub-003_ses-STROOP_acq-PDw_part-phase_echo-1_MPM
checked
:
true
suffix
:
MPM
attributes
:
ProtocolName
:
'
al_mtflash3d_PDw'
ImageType
:
'
ORIGINAL\\PRIMARY\\P\\ND'
bids
:
!!omap
-
acq
:
PDw
-
ce
:
~
-
rec
:
~
-
part
:
phase
-
run
:
~
-
echo
:
<EchoNumbers>
-
mod
:
~
json
:
!!omap
-
MTState
:
"
Off"
-
ContrastBolusIngredient
:
~
-
EchoTime
:
<time3:EchoTime>
-
RepetitionTime
:
<time3:RepetitionTime>
-
FlipAngle
:
<FlipAngle>
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/009-al_mtflash3d_T1w/s1905-0009-00001-000176-01.nii
example
:
anat/sub-003_ses-STROOP_acq-T1w_part-phase_echo-1_T1w
checked
:
true
suffix
:
MPM
attributes
:
ProtocolName
:
al_mtflash3d_T1w
ImageType
:
'
ORIGINAL\\PRIMARY\\P\\ND'
bids
:
!!omap
-
acq
:
T1w
-
part
:
phase
-
ce
:
~
-
rec
:
~
-
run
:
~
-
mod
:
~
-
echo
:
<EchoNumbers>
json
:
!!omap
-
ContrastBolusIngredient
:
~
-
provenance
:
/home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/013-al_mtflash3d_MTw/s1905-0013-00001-000176-01.nii
example
:
anat/sub-003_ses-STROOP_acq-MTw_part-phase_echo-1_MPM
checked
:
true
suffix
:
MPM
attributes
:
ProtocolName
:
'
al_mtflash3d_MTw'
ImageType
:
'
ORIGINAL\\PRIMARY\\P\\ND'
bids
:
!!omap
-
acq
:
MTw
-
ce
:
~
-
rec
:
~
-
part
:
phase
-
run
:
~
-
echo
:
<EchoNumbers>
-
mod
:
~
json
:
!!omap
-
MTState
:
"
On"
-
ContrastBolusIngredient
:
~
-
EchoTime
:
<time3:EchoTime>
-
RepetitionTime
:
<time3:RepetitionTime>
-
FlipAngle
:
<FlipAngle>
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