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Commit 19804c90 authored by nbeliy's avatar nbeliy
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adapted for version 1.1.1

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example1/resources/map/bidsmap.yaml
+ 27
− 32
View file @ 19804c90
Options: __bids__: 1.2.0
version: 2.3.0
bidsignore: []
PlugIns:
path: resources/plugins/bidsify_plugin.py
options: {}
MRI: MRI:
Nifti_SPM12: Nifti_SPM12:
__ignore__: __ignore__:
...@@ -40,7 +35,7 @@ MRI: ...@@ -40,7 +35,7 @@ MRI:
- echo: ~ - echo: ~
json: !!omap json: !!omap
- TaskName: <<bids:task>> - TaskName: <<bids:task>>
- RepetitionTime: <time3:RepetitionTime> - RepetitionTime: <scale-3:RepetitionTime>
- NumberOfVolumesDiscardedByScanner: 0 - NumberOfVolumesDiscardedByScanner: 0
- NumberOfVolumesDiscardedByUser: 0 - NumberOfVolumesDiscardedByUser: 0
- DelayTime: 0 - DelayTime: 0
...@@ -62,7 +57,7 @@ MRI: ...@@ -62,7 +57,7 @@ MRI:
- echo: ~ - echo: ~
json: !!omap json: !!omap
- TaskName: <<bids:task>> - TaskName: <<bids:task>>
- RepetitionTime: <time3:RepetitionTime> - RepetitionTime: <scale-3:RepetitionTime>
- NumberOfVolumesDiscardedByScanner: 0 - NumberOfVolumesDiscardedByScanner: 0
- NumberOfVolumesDiscardedByUser: 0 - NumberOfVolumesDiscardedByUser: 0
- DelayTime: 0 - DelayTime: 0
...@@ -83,7 +78,7 @@ MRI: ...@@ -83,7 +78,7 @@ MRI:
- echo: ~ - echo: ~
json: !!omap json: !!omap
- TaskName: <<bids:task>> - TaskName: <<bids:task>>
- RepetitionTime: <time3:RepetitionTime> - RepetitionTime: <scale-3:RepetitionTime>
- NumberOfVolumesDiscardedByScanner: 0 - NumberOfVolumesDiscardedByScanner: 0
- NumberOfVolumesDiscardedByUser: 0 - NumberOfVolumesDiscardedByUser: 0
- DelayTime: 0 - DelayTime: 0
...@@ -104,7 +99,7 @@ MRI: ...@@ -104,7 +99,7 @@ MRI:
- echo: ~ - echo: ~
json: !!omap json: !!omap
- TaskName: <<bids:task>> - TaskName: <<bids:task>>
- RepetitionTime: <time3:RepetitionTime> - RepetitionTime: <scale-3:RepetitionTime>
- NumberOfVolumesDiscardedByScanner: 0 - NumberOfVolumesDiscardedByScanner: 0
- NumberOfVolumesDiscardedByUser: 0 - NumberOfVolumesDiscardedByUser: 0
- DelayTime: 0 - DelayTime: 0
...@@ -125,7 +120,7 @@ MRI: ...@@ -125,7 +120,7 @@ MRI:
- echo: ~ - echo: ~
json: !!omap json: !!omap
- TaskName: <<bids:task>> - TaskName: <<bids:task>>
- RepetitionTime: <time3:RepetitionTime> - RepetitionTime: <scale-3:RepetitionTime>
- NumberOfVolumesDiscardedByScanner: 0 - NumberOfVolumesDiscardedByScanner: 0
- NumberOfVolumesDiscardedByUser: 0 - NumberOfVolumesDiscardedByUser: 0
- DelayTime: 0 - DelayTime: 0
...@@ -144,7 +139,7 @@ MRI: ...@@ -144,7 +139,7 @@ MRI:
- dir: ~ - dir: ~
- run: ~ - run: ~
json: !!omap json: !!omap
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
- IntendedFor: - IntendedFor:
- "func/<<subject>>_<<session>>_task-nBack_bold.nii" - "func/<<subject>>_<<session>>_task-nBack_bold.nii"
- "func/<<subject>>_<<session>>_task-rest_bold.nii" - "func/<<subject>>_<<session>>_task-rest_bold.nii"
...@@ -162,7 +157,7 @@ MRI: ...@@ -162,7 +157,7 @@ MRI:
- dir: ~ - dir: ~
- run: ~ - run: ~
json: !!omap json: !!omap
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
- IntendedFor: - IntendedFor:
- "anat/<<subject>>_<<session>>_acq-PDw_echo-*_MPM.nii" - "anat/<<subject>>_<<session>>_acq-PDw_echo-*_MPM.nii"
- "anat/<<subject>>_<<session>>_acq-MTw_echo-*_MPM.nii" - "anat/<<subject>>_<<session>>_acq-MTw_echo-*_MPM.nii"
...@@ -182,8 +177,8 @@ MRI: ...@@ -182,8 +177,8 @@ MRI:
- run: ~ - run: ~
json: !!omap json: !!omap
- EchoTime: ~ - EchoTime: ~
- EchoTime1: <time6:CSASeriesHeaderInfo/MrPhoenixProtocol/alTE/0> - EchoTime1: <scale-6:CSASeriesHeaderInfo/MrPhoenixProtocol/alTE/0>
- EchoTime2: <time6:CSASeriesHeaderInfo/MrPhoenixProtocol/alTE/1> - EchoTime2: <scale-6:CSASeriesHeaderInfo/MrPhoenixProtocol/alTE/1>
- IntendedFor: - IntendedFor:
- "func/<<subject>>_<<session>>_task-nBack_bold.nii" - "func/<<subject>>_<<session>>_task-nBack_bold.nii"
- "func/<<subject>>_<<session>>_task-rest_bold.nii" - "func/<<subject>>_<<session>>_task-rest_bold.nii"
...@@ -202,8 +197,8 @@ MRI: ...@@ -202,8 +197,8 @@ MRI:
- run: ~ - run: ~
json: !!omap json: !!omap
- EchoTime: ~ - EchoTime: ~
- EchoTime1: <time6:CSASeriesHeaderInfo/MrPhoenixProtocol/alTE/0> - EchoTime1: <scale-6:CSASeriesHeaderInfo/MrPhoenixProtocol/alTE/0>
- EchoTime2: <time6:CSASeriesHeaderInfo/MrPhoenixProtocol/alTE/1> - EchoTime2: <scale-6:CSASeriesHeaderInfo/MrPhoenixProtocol/alTE/1>
- IntendedFor: - IntendedFor:
- "anat/<<subject>>_<<session>>_acq-PDw_echo-*_MPM.nii" - "anat/<<subject>>_<<session>>_acq-PDw_echo-*_MPM.nii"
- "anat/<<subject>>_<<session>>_acq-MTw_echo-*_MPM.nii" - "anat/<<subject>>_<<session>>_acq-MTw_echo-*_MPM.nii"
...@@ -219,7 +214,7 @@ MRI: ...@@ -219,7 +214,7 @@ MRI:
- acq: HeadPDw - acq: HeadPDw
- mod: ~ - mod: ~
json: !!omap json: !!omap
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
- IntendedFor: - IntendedFor:
- "anat/<<subject>>_<<session>>_acq-<<bids:mod>>_echo-*_MPM.nii" - "anat/<<subject>>_<<session>>_acq-<<bids:mod>>_echo-*_MPM.nii"
- provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/003-al_mtflash3d_sensBody/s1905-0003-00001-000032-01.nii - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/003-al_mtflash3d_sensBody/s1905-0003-00001-000032-01.nii
...@@ -233,7 +228,7 @@ MRI: ...@@ -233,7 +228,7 @@ MRI:
- acq: BodyPDw - acq: BodyPDw
- mod: ~ - mod: ~
json: !!omap json: !!omap
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
- IntendedFor: - IntendedFor:
- "anat/<<subject>>_<<session>>_acq-<<bids:mod>>_echo-*_MPM.nii" - "anat/<<subject>>_<<session>>_acq-<<bids:mod>>_echo-*_MPM.nii"
- provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/014-al_B1mapping/s1905-0014-00001-000001-01.nii - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/014-al_B1mapping/s1905-0014-00001-000001-01.nii
...@@ -246,7 +241,7 @@ MRI: ...@@ -246,7 +241,7 @@ MRI:
- echo: <EchoNumbers> - echo: <EchoNumbers>
- fa: <AcquisitionNumber> - fa: <AcquisitionNumber>
json: !!omap json: !!omap
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
- B1mapNominalFAValues: <B1mapNominalFAValues> - B1mapNominalFAValues: <B1mapNominalFAValues>
- provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/006-al_mtflash3d_sensArray/s1905-0006-00001-000032-01.nii - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/006-al_mtflash3d_sensArray/s1905-0006-00001-000032-01.nii
example: fmap/sub-003_ses-STROOP_acq-HeadT1w_B1minus example: fmap/sub-003_ses-STROOP_acq-HeadT1w_B1minus
...@@ -259,7 +254,7 @@ MRI: ...@@ -259,7 +254,7 @@ MRI:
- acq: HeadT1w - acq: HeadT1w
- mod: ~ - mod: ~
json: !!omap json: !!omap
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
- provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/007-al_mtflash3d_sensBody/s1905-0007-00001-000032-01.nii - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/007-al_mtflash3d_sensBody/s1905-0007-00001-000032-01.nii
example: fmap/sub-003_ses-STROOP_acq-BodyT1w_B1minus example: fmap/sub-003_ses-STROOP_acq-BodyT1w_B1minus
checked: true checked: true
...@@ -273,7 +268,7 @@ MRI: ...@@ -273,7 +268,7 @@ MRI:
json: !!omap json: !!omap
- IntendedFor: - IntendedFor:
- "anat/<<subject>>_<<session>>_acq-<<bids:mod>>_echo-*_MPM.nii" - "anat/<<subject>>_<<session>>_acq-<<bids:mod>>_echo-*_MPM.nii"
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
- provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/010-al_mtflash3d_sensArray/s1905-0010-00001-000032-01.nii - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/010-al_mtflash3d_sensArray/s1905-0010-00001-000032-01.nii
example: fmap/sub-003_ses-STROOP_acq-HeadMTw_B1minus example: fmap/sub-003_ses-STROOP_acq-HeadMTw_B1minus
checked: true checked: true
...@@ -287,7 +282,7 @@ MRI: ...@@ -287,7 +282,7 @@ MRI:
json: !!omap json: !!omap
- IntendedFor: - IntendedFor:
- "anat/<<subject>>_<<session>>_acq-<<bids:mod>>_echo-*_MPM.nii" - "anat/<<subject>>_<<session>>_acq-<<bids:mod>>_echo-*_MPM.nii"
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
- provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/011-al_mtflash3d_sensBody/s1905-0011-00001-000032-01.nii - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/011-al_mtflash3d_sensBody/s1905-0011-00001-000032-01.nii
example: fmap/sub-003_ses-STROOP_acq-BodyMTw_B1minus example: fmap/sub-003_ses-STROOP_acq-BodyMTw_B1minus
checked: true checked: true
...@@ -301,7 +296,7 @@ MRI: ...@@ -301,7 +296,7 @@ MRI:
json: !!omap json: !!omap
- IntendedFor: - IntendedFor:
- "anat/<<subject>>_<<session>>_acq-<<bids:mod>>_echo-*_MPM.nii" - "anat/<<subject>>_<<session>>_acq-<<bids:mod>>_echo-*_MPM.nii"
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
dwi: dwi:
- provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-HCL/MRI/012-cmrr_mbep2d_diff_NODDI_invertpe/s1904-0012-00001-000001-01.nii - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-HCL/MRI/012-cmrr_mbep2d_diff_NODDI_invertpe/s1904-0012-00001-000001-01.nii
example: dwi/sub-003_ses-HCL_acq-RF_dir-PA_run-1_dwi example: dwi/sub-003_ses-HCL_acq-RF_dir-PA_run-1_dwi
...@@ -380,8 +375,8 @@ MRI: ...@@ -380,8 +375,8 @@ MRI:
- mod: ~ - mod: ~
json: !!omap json: !!omap
- MTState: "Off" - MTState: "Off"
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
- RepetitionTime: <time3:RepetitionTime> - RepetitionTime: <scale-3:RepetitionTime>
- FlipAngle: <FlipAngle> - FlipAngle: <FlipAngle>
- provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/008-al_mtflash3d_T1w/s1905-0008-00001-000176-01.nii - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/008-al_mtflash3d_T1w/s1905-0008-00001-000176-01.nii
example: anat/sub-003_ses-STROOP_acq-T1w_part-mag_echo-1_MPM example: anat/sub-003_ses-STROOP_acq-T1w_part-mag_echo-1_MPM
...@@ -417,8 +412,8 @@ MRI: ...@@ -417,8 +412,8 @@ MRI:
- mod: ~ - mod: ~
json: !!omap json: !!omap
- MTState: "On" - MTState: "On"
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
- RepetitionTime: <time3:RepetitionTime> - RepetitionTime: <scale-3:RepetitionTime>
- FlipAngle: <FlipAngle> - FlipAngle: <FlipAngle>
- provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/005-al_mtflash3d_PDw/s1905-0005-00001-000176-01.nii - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/005-al_mtflash3d_PDw/s1905-0005-00001-000176-01.nii
example: anat/sub-003_ses-STROOP_acq-PDw_part-phase_echo-1_MPM example: anat/sub-003_ses-STROOP_acq-PDw_part-phase_echo-1_MPM
...@@ -437,8 +432,8 @@ MRI: ...@@ -437,8 +432,8 @@ MRI:
- mod: ~ - mod: ~
json: !!omap json: !!omap
- MTState: "Off" - MTState: "Off"
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
- RepetitionTime: <time3:RepetitionTime> - RepetitionTime: <scale-3:RepetitionTime>
- FlipAngle: <FlipAngle> - FlipAngle: <FlipAngle>
- provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/009-al_mtflash3d_T1w/s1905-0009-00001-000176-01.nii - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/009-al_mtflash3d_T1w/s1905-0009-00001-000176-01.nii
example: anat/sub-003_ses-STROOP_acq-T1w_part-phase_echo-1_T1w example: anat/sub-003_ses-STROOP_acq-T1w_part-phase_echo-1_T1w
...@@ -474,6 +469,6 @@ MRI: ...@@ -474,6 +469,6 @@ MRI:
- mod: ~ - mod: ~
json: !!omap json: !!omap
- MTState: "On" - MTState: "On"
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
- RepetitionTime: <time3:RepetitionTime> - RepetitionTime: <scale-3:RepetitionTime>
- FlipAngle: <FlipAngle> - FlipAngle: <FlipAngle>
example1/resources/map/bidsmap_noPlugin.yaml
+ 27
− 32
View file @ 19804c90
Options: __bids__: 1.2.0
version: 2.3.o
bidsignore: []
PlugIns:
path: ~
options: {}
MRI: MRI:
Nifti_SPM12: Nifti_SPM12:
__ignore__: __ignore__:
...@@ -33,7 +28,7 @@ MRI: ...@@ -33,7 +28,7 @@ MRI:
- echo: ~ - echo: ~
json: !!omap json: !!omap
- TaskName: <<bids:task>> - TaskName: <<bids:task>>
- RepetitionTime: <time3:RepetitionTime> - RepetitionTime: <scale-3:RepetitionTime>
- NumberOfVolumesDiscardedByScanner: 0 - NumberOfVolumesDiscardedByScanner: 0
- NumberOfVolumesDiscardedByUser: 0 - NumberOfVolumesDiscardedByUser: 0
- DelayTime: 0 - DelayTime: 0
...@@ -55,7 +50,7 @@ MRI: ...@@ -55,7 +50,7 @@ MRI:
- echo: ~ - echo: ~
json: !!omap json: !!omap
- TaskName: <<bids:task>> - TaskName: <<bids:task>>
- RepetitionTime: <time3:RepetitionTime> - RepetitionTime: <scale-3:RepetitionTime>
- NumberOfVolumesDiscardedByScanner: 0 - NumberOfVolumesDiscardedByScanner: 0
- NumberOfVolumesDiscardedByUser: 0 - NumberOfVolumesDiscardedByUser: 0
- DelayTime: 0 - DelayTime: 0
...@@ -76,7 +71,7 @@ MRI: ...@@ -76,7 +71,7 @@ MRI:
- echo: ~ - echo: ~
json: !!omap json: !!omap
- TaskName: <<bids:task>> - TaskName: <<bids:task>>
- RepetitionTime: <time3:RepetitionTime> - RepetitionTime: <scale-3:RepetitionTime>
- NumberOfVolumesDiscardedByScanner: 0 - NumberOfVolumesDiscardedByScanner: 0
- NumberOfVolumesDiscardedByUser: 0 - NumberOfVolumesDiscardedByUser: 0
- DelayTime: 0 - DelayTime: 0
...@@ -97,7 +92,7 @@ MRI: ...@@ -97,7 +92,7 @@ MRI:
- echo: ~ - echo: ~
json: !!omap json: !!omap
- TaskName: <<bids:task>> - TaskName: <<bids:task>>
- RepetitionTime: <time3:RepetitionTime> - RepetitionTime: <scale-3:RepetitionTime>
- NumberOfVolumesDiscardedByScanner: 0 - NumberOfVolumesDiscardedByScanner: 0
- NumberOfVolumesDiscardedByUser: 0 - NumberOfVolumesDiscardedByUser: 0
- DelayTime: 0 - DelayTime: 0
...@@ -118,7 +113,7 @@ MRI: ...@@ -118,7 +113,7 @@ MRI:
- echo: ~ - echo: ~
json: !!omap json: !!omap
- TaskName: <<bids:task>> - TaskName: <<bids:task>>
- RepetitionTime: <time3:RepetitionTime> - RepetitionTime: <scale-3:RepetitionTime>
- NumberOfVolumesDiscardedByScanner: 0 - NumberOfVolumesDiscardedByScanner: 0
- NumberOfVolumesDiscardedByUser: 0 - NumberOfVolumesDiscardedByUser: 0
- DelayTime: 0 - DelayTime: 0
...@@ -137,7 +132,7 @@ MRI: ...@@ -137,7 +132,7 @@ MRI:
- dir: ~ - dir: ~
- run: ~ - run: ~
json: !!omap json: !!omap
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
- IntendedFor: - IntendedFor:
- "func/<<subject>>_<<session>>_task-nBack_bold.nii" - "func/<<subject>>_<<session>>_task-nBack_bold.nii"
- "func/<<subject>>_<<session>>_task-rest_bold.nii" - "func/<<subject>>_<<session>>_task-rest_bold.nii"
...@@ -155,7 +150,7 @@ MRI: ...@@ -155,7 +150,7 @@ MRI:
- dir: ~ - dir: ~
- run: ~ - run: ~
json: !!omap json: !!omap
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
- IntendedFor: - IntendedFor:
- "anat/<<subject>>_<<session>>_acq-PDw_echo-*_MPM.nii" - "anat/<<subject>>_<<session>>_acq-PDw_echo-*_MPM.nii"
- "anat/<<subject>>_<<session>>_acq-MTw_echo-*_MPM.nii" - "anat/<<subject>>_<<session>>_acq-MTw_echo-*_MPM.nii"
...@@ -175,8 +170,8 @@ MRI: ...@@ -175,8 +170,8 @@ MRI:
- run: ~ - run: ~
json: !!omap json: !!omap
- EchoTime: ~ - EchoTime: ~
- EchoTime1: <time6:CSASeriesHeaderInfo/MrPhoenixProtocol/alTE/0> - EchoTime1: <scale-6:CSASeriesHeaderInfo/MrPhoenixProtocol/alTE/0>
- EchoTime2: <time6:CSASeriesHeaderInfo/MrPhoenixProtocol/alTE/1> - EchoTime2: <scale-6:CSASeriesHeaderInfo/MrPhoenixProtocol/alTE/1>
- IntendedFor: - IntendedFor:
- "func/<<subject>>_<<session>>_task-nBack_bold.nii" - "func/<<subject>>_<<session>>_task-nBack_bold.nii"
- "func/<<subject>>_<<session>>_task-rest_bold.nii" - "func/<<subject>>_<<session>>_task-rest_bold.nii"
...@@ -195,8 +190,8 @@ MRI: ...@@ -195,8 +190,8 @@ MRI:
- run: ~ - run: ~
json: !!omap json: !!omap
- EchoTime: ~ - EchoTime: ~
- EchoTime1: <time6:CSASeriesHeaderInfo/MrPhoenixProtocol/alTE/0> - EchoTime1: <scale-6:CSASeriesHeaderInfo/MrPhoenixProtocol/alTE/0>
- EchoTime2: <time6:CSASeriesHeaderInfo/MrPhoenixProtocol/alTE/1> - EchoTime2: <scale-6:CSASeriesHeaderInfo/MrPhoenixProtocol/alTE/1>
- IntendedFor: - IntendedFor:
- "anat/<<subject>>_<<session>>_acq-PDw_echo-*_MPM.nii" - "anat/<<subject>>_<<session>>_acq-PDw_echo-*_MPM.nii"
- "anat/<<subject>>_<<session>>_acq-MTw_echo-*_MPM.nii" - "anat/<<subject>>_<<session>>_acq-MTw_echo-*_MPM.nii"
...@@ -212,7 +207,7 @@ MRI: ...@@ -212,7 +207,7 @@ MRI:
- acq: HeadPDw - acq: HeadPDw
- mod: ~ - mod: ~
json: !!omap json: !!omap
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
- IntendedFor: - IntendedFor:
- "anat/<<subject>>_<<session>>_acq-<<bids:mod>>_echo-*_MPM.nii" - "anat/<<subject>>_<<session>>_acq-<<bids:mod>>_echo-*_MPM.nii"
- provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/003-al_mtflash3d_sensBody/s1905-0003-00001-000032-01.nii - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/003-al_mtflash3d_sensBody/s1905-0003-00001-000032-01.nii
...@@ -226,7 +221,7 @@ MRI: ...@@ -226,7 +221,7 @@ MRI:
- acq: BodyPDw - acq: BodyPDw
- mod: ~ - mod: ~
json: !!omap json: !!omap
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
- IntendedFor: - IntendedFor:
- "anat/<<subject>>_<<session>>_acq-<<bids:mod>>_echo-*_MPM.nii" - "anat/<<subject>>_<<session>>_acq-<<bids:mod>>_echo-*_MPM.nii"
- provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/014-al_B1mapping/s1905-0014-00001-000001-01.nii - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/014-al_B1mapping/s1905-0014-00001-000001-01.nii
...@@ -239,7 +234,7 @@ MRI: ...@@ -239,7 +234,7 @@ MRI:
- echo: <EchoNumbers> - echo: <EchoNumbers>
- fa: <AcquisitionNumber> - fa: <AcquisitionNumber>
json: !!omap json: !!omap
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
- B1mapNominalFAValues: <B1mapNominalFAValues> - B1mapNominalFAValues: <B1mapNominalFAValues>
- provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/006-al_mtflash3d_sensArray/s1905-0006-00001-000032-01.nii - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/006-al_mtflash3d_sensArray/s1905-0006-00001-000032-01.nii
example: fmap/sub-003_ses-STROOP_acq-HeadT1w_B1minus example: fmap/sub-003_ses-STROOP_acq-HeadT1w_B1minus
...@@ -252,7 +247,7 @@ MRI: ...@@ -252,7 +247,7 @@ MRI:
- acq: HeadT1w - acq: HeadT1w
- mod: ~ - mod: ~
json: !!omap json: !!omap
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
- provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/007-al_mtflash3d_sensBody/s1905-0007-00001-000032-01.nii - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/007-al_mtflash3d_sensBody/s1905-0007-00001-000032-01.nii
example: fmap/sub-003_ses-STROOP_acq-BodyT1w_B1minus example: fmap/sub-003_ses-STROOP_acq-BodyT1w_B1minus
checked: true checked: true
...@@ -266,7 +261,7 @@ MRI: ...@@ -266,7 +261,7 @@ MRI:
json: !!omap json: !!omap
- IntendedFor: - IntendedFor:
- "anat/<<subject>>_<<session>>_acq-<<bids:mod>>_echo-*_MPM.nii" - "anat/<<subject>>_<<session>>_acq-<<bids:mod>>_echo-*_MPM.nii"
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
- provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/010-al_mtflash3d_sensArray/s1905-0010-00001-000032-01.nii - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/010-al_mtflash3d_sensArray/s1905-0010-00001-000032-01.nii
example: fmap/sub-003_ses-STROOP_acq-HeadMTw_B1minus example: fmap/sub-003_ses-STROOP_acq-HeadMTw_B1minus
checked: true checked: true
...@@ -280,7 +275,7 @@ MRI: ...@@ -280,7 +275,7 @@ MRI:
json: !!omap json: !!omap
- IntendedFor: - IntendedFor:
- "anat/<<subject>>_<<session>>_acq-<<bids:mod>>_echo-*_MPM.nii" - "anat/<<subject>>_<<session>>_acq-<<bids:mod>>_echo-*_MPM.nii"
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
- provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/011-al_mtflash3d_sensBody/s1905-0011-00001-000032-01.nii - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/011-al_mtflash3d_sensBody/s1905-0011-00001-000032-01.nii
example: fmap/sub-003_ses-STROOP_acq-BodyMTw_B1minus example: fmap/sub-003_ses-STROOP_acq-BodyMTw_B1minus
checked: true checked: true
...@@ -294,7 +289,7 @@ MRI: ...@@ -294,7 +289,7 @@ MRI:
json: !!omap json: !!omap
- IntendedFor: - IntendedFor:
- "anat/<<subject>>_<<session>>_acq-<<bids:mod>>_echo-*_MPM.nii" - "anat/<<subject>>_<<session>>_acq-<<bids:mod>>_echo-*_MPM.nii"
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
dwi: dwi:
- provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-HCL/MRI/012-cmrr_mbep2d_diff_NODDI_invertpe/s1904-0012-00001-000001-01.nii - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-HCL/MRI/012-cmrr_mbep2d_diff_NODDI_invertpe/s1904-0012-00001-000001-01.nii
example: dwi/sub-003_ses-HCL_acq-RF_dir-PA_run-1_dwi example: dwi/sub-003_ses-HCL_acq-RF_dir-PA_run-1_dwi
...@@ -373,8 +368,8 @@ MRI: ...@@ -373,8 +368,8 @@ MRI:
- mod: ~ - mod: ~
json: !!omap json: !!omap
- MTState: "Off" - MTState: "Off"
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
- RepetitionTime: <time3:RepetitionTime> - RepetitionTime: <scale-3:RepetitionTime>
- FlipAngle: <FlipAngle> - FlipAngle: <FlipAngle>
- provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/008-al_mtflash3d_T1w/s1905-0008-00001-000176-01.nii - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/008-al_mtflash3d_T1w/s1905-0008-00001-000176-01.nii
example: anat/sub-003_ses-STROOP_acq-T1w_part-mag_echo-1_MPM example: anat/sub-003_ses-STROOP_acq-T1w_part-mag_echo-1_MPM
...@@ -409,8 +404,8 @@ MRI: ...@@ -409,8 +404,8 @@ MRI:
- mod: ~ - mod: ~
json: !!omap json: !!omap
- MTState: "On" - MTState: "On"
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
- RepetitionTime: <time3:RepetitionTime> - RepetitionTime: <scale-3:RepetitionTime>
- FlipAngle: <FlipAngle> - FlipAngle: <FlipAngle>
- provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/005-al_mtflash3d_PDw/s1905-0005-00001-000176-01.nii - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/005-al_mtflash3d_PDw/s1905-0005-00001-000176-01.nii
example: anat/sub-003_ses-STROOP_acq-PDw_part-phase_echo-1_MPM example: anat/sub-003_ses-STROOP_acq-PDw_part-phase_echo-1_MPM
...@@ -429,8 +424,8 @@ MRI: ...@@ -429,8 +424,8 @@ MRI:
- mod: ~ - mod: ~
json: !!omap json: !!omap
- MTState: "Off" - MTState: "Off"
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
- RepetitionTime: <time3:RepetitionTime> - RepetitionTime: <scale-3:RepetitionTime>
- FlipAngle: <FlipAngle> - FlipAngle: <FlipAngle>
- provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/009-al_mtflash3d_T1w/s1905-0009-00001-000176-01.nii - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/009-al_mtflash3d_T1w/s1905-0009-00001-000176-01.nii
example: anat/sub-003_ses-STROOP_acq-T1w_part-phase_echo-1_T1w example: anat/sub-003_ses-STROOP_acq-T1w_part-phase_echo-1_T1w
...@@ -465,6 +460,6 @@ MRI: ...@@ -465,6 +460,6 @@ MRI:
- mod: ~ - mod: ~
json: !!omap json: !!omap
- MTState: "On" - MTState: "On"
- EchoTime: <time3:EchoTime> - EchoTime: <scale-3:EchoTime>
- RepetitionTime: <time3:RepetitionTime> - RepetitionTime: <scale-3:RepetitionTime>
- FlipAngle: <FlipAngle> - FlipAngle: <FlipAngle>
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