Conversion dicoms using dcm2niix
Added
- Modules/base: The series Id and No can now be changed in plugins via attributes
recording.series_id
andrecording.series_no
- MRI/jsonNIFTY: All bids metafields are by default completed from the provided json
- Modules/base: If BIDS metadata has the same name as a custom metadata, then the content of custom metadata is used
- plugins/tools: A tool that uses dcm2niix to convert and merge dicoms after preparation
Changed:
- Modules/MRI/Nifti, Modules/PET/Nifti: the header dump is now created by default
- MRI/DICOM: Using nibabel and mri_parser to parse Siemens-specific headers CSAHeaderInfo and CSASeriesInfo
Fixed
- Modules/MRI/Nifti, Modules/PET/Nifti: diminfo from header are now retrieved as integer instead of bytes
- Modules/MRI/Nifti, Modules/PET/Nifti: header dump exported as dict, instead of string