Running with gitlab-runner 15.4.0 (43b2dc3d)
  on warson tPfqJH-D
section_start:1666952503:resolve_secrets
Resolving secrets
section_end:1666952503:resolve_secrets
section_start:1666952503:prepare_executor
Preparing the "docker" executor
Using Docker executor with image rboman/waves-py3-red:2020.3 ...
Pulling docker image rboman/waves-py3-red:2020.3 ...
Using docker image sha256:5b6846364894b01bb5b2089520d56a75a38a7f4be7afdbf4486b42bc392c56bb for rboman/waves-py3-red:2020.3 with digest rboman/waves-py3-red@sha256:a17307da4dfb83bcf2271290bb35512d97eef082876d9da591078075ef2b9ed7 ...
section_end:1666952506:prepare_executor
section_start:1666952506:prepare_script
Preparing environment
Running on runner-tpfqjh-d-project-397-concurrent-0 via warson...
section_end:1666952507:prepare_script
section_start:1666952507:get_sources
Getting source from Git repository
Fetching changes with git depth set to 50...
Initialized empty Git repository in /builds/am-dept/waves/.git/
Created fresh repository.
Checking out 49ddb687 as boman...
Updating/initializing submodules recursively with git depth set to 50...
Submodule 'ext/amfe' (https://gitlab-ci-token:[MASKED]@gitlab.uliege.be/am-dept/amfe.git) registered for path 'ext/amfe'
Synchronizing submodule url for 'ext/amfe'
Cloning into '/builds/am-dept/waves/ext/amfe'...
Submodule path 'ext/amfe': checked out '7b5a21b0c5fc3885a11e98ebc2e5acbd19bc55bf'
Entering 'ext/amfe'
section_end:1666952510:get_sources
section_start:1666952510:download_artifacts
Downloading artifacts
Downloading artifacts for build-red (30522)...
Downloading artifacts from coordinator... ok        id=30522 responseStatus=200 OK token=QogUzHAP
section_end:1666952512:download_artifacts
section_start:1666952512:step_script
Executing "step_script" stage of the job script
Using docker image sha256:5b6846364894b01bb5b2089520d56a75a38a7f4be7afdbf4486b42bc392c56bb for rboman/waves-py3-red:2020.3 with digest rboman/waves-py3-red@sha256:a17307da4dfb83bcf2271290bb35512d97eef082876d9da591078075ef2b9ed7 ...
$ source /opt/intel/mkl/bin/mklvars.sh intel64
$ source /opt/intel/tbb/bin/tbbvars.sh intel64
$ echo $(nproc)
64
$ printenv | sort

CI=true
CI_API_V4_URL=https://gitlab.uliege.be/api/v4
CI_BUILDS_DIR=/builds
CI_BUILD_BEFORE_SHA=c3d0c4cd423761ecb93717c004b26d96c8473234
CI_BUILD_ID=30525
CI_BUILD_NAME=ctest-red
CI_BUILD_REF=49ddb687411b18ccd3c259615fd3dbc37fffa2b9
CI_BUILD_REF_NAME=boman
CI_BUILD_REF_SLUG=boman
CI_BUILD_STAGE=test
CI_BUILD_TOKEN=[MASKED]
CI_COMMIT_AUTHOR=Romain Boman <romain.boman@gmail.com>
CI_COMMIT_BEFORE_SHA=c3d0c4cd423761ecb93717c004b26d96c8473234
CI_COMMIT_BRANCH=boman
CI_COMMIT_DESCRIPTION=
CI_COMMIT_MESSAGE=remove flow, mparams, mirrors - update amfe
CI_COMMIT_REF_NAME=boman
CI_COMMIT_REF_PROTECTED=false
CI_COMMIT_REF_SLUG=boman
CI_COMMIT_SHA=49ddb687411b18ccd3c259615fd3dbc37fffa2b9
CI_COMMIT_SHORT_SHA=49ddb687
CI_COMMIT_TIMESTAMP=2022-10-28T12:17:07+02:00
CI_COMMIT_TITLE=remove flow, mparams, mirrors - update amfe
CI_CONCURRENT_ID=0
CI_CONCURRENT_PROJECT_ID=0
CI_CONFIG_PATH=.gitlab-ci.yml
CI_DEFAULT_BRANCH=master
CI_DEPENDENCY_PROXY_DIRECT_GROUP_IMAGE_PREFIX=gitlab.uliege.be:443/am-dept/dependency_proxy/containers
CI_DEPENDENCY_PROXY_GROUP_IMAGE_PREFIX=gitlab.uliege.be:443/am-dept/dependency_proxy/containers
CI_DEPENDENCY_PROXY_PASSWORD=[MASKED]
CI_DEPENDENCY_PROXY_SERVER=gitlab.uliege.be:443
CI_DEPENDENCY_PROXY_USER=gitlab-ci-token
CI_DISPOSABLE_ENVIRONMENT=true
CI_JOB_ID=30525
CI_JOB_IMAGE=rboman/waves-py3-red:2020.3
CI_JOB_JWT=[MASKED]
CI_JOB_JWT_V1=[MASKED]
CI_JOB_JWT_V2=[MASKED]
CI_JOB_NAME=ctest-red
CI_JOB_STAGE=test
CI_JOB_STARTED_AT=2022-10-28T10:21:43Z
CI_JOB_STATUS=running
CI_JOB_TOKEN=[MASKED]
CI_JOB_URL=https://gitlab.uliege.be/am-dept/waves/-/jobs/30525
CI_NODE_TOTAL=1
CI_PAGES_DOMAIN=gitlabpages.uliege.be
CI_PAGES_URL=https://am-dept.gitlabpages.uliege.be/waves
CI_PIPELINE_CREATED_AT=2022-10-28T10:17:13Z
CI_PIPELINE_ID=9686
CI_PIPELINE_IID=343
CI_PIPELINE_SOURCE=push
CI_PIPELINE_URL=https://gitlab.uliege.be/am-dept/waves/-/pipelines/9686
CI_PROJECT_CLASSIFICATION_LABEL=
CI_PROJECT_DIR=/builds/am-dept/waves
CI_PROJECT_ID=397
CI_PROJECT_NAME=waves
CI_PROJECT_NAMESPACE=am-dept
CI_PROJECT_PATH=am-dept/waves
CI_PROJECT_PATH_SLUG=am-dept-waves
CI_PROJECT_REPOSITORY_LANGUAGES=python,c++,matlab,glsl,cmake
CI_PROJECT_ROOT_NAMESPACE=am-dept
CI_PROJECT_TITLE=waves
CI_PROJECT_URL=https://gitlab.uliege.be/am-dept/waves
CI_PROJECT_VISIBILITY=public
CI_REGISTRY=gitlab.uliege.be:5050
CI_REGISTRY_IMAGE=gitlab.uliege.be:5050/am-dept/waves
CI_REGISTRY_PASSWORD=[MASKED]
CI_REGISTRY_USER=gitlab-ci-token
CI_REPOSITORY_URL=https://gitlab-ci-token:[MASKED]@gitlab.uliege.be/am-dept/waves.git
CI_RUNNER_DESCRIPTION=warson
CI_RUNNER_EXECUTABLE_ARCH=linux/amd64
CI_RUNNER_ID=19
CI_RUNNER_REVISION=43b2dc3d
CI_RUNNER_SHORT_TOKEN=tPfqJH-D
CI_RUNNER_TAGS=warson, mn2l
CI_RUNNER_VERSION=15.4.0
CI_SERVER=yes
CI_SERVER_HOST=gitlab.uliege.be
CI_SERVER_NAME=GitLab
CI_SERVER_PORT=443
CI_SERVER_PROTOCOL=https
CI_SERVER_REVISION=661f7e4160f
CI_SERVER_TLS_CA_FILE=/builds/am-dept/waves.tmp/CI_SERVER_TLS_CA_FILE
CI_SERVER_URL=https://gitlab.uliege.be
CI_SERVER_VERSION=14.9.5-ee
CI_SERVER_VERSION_MAJOR=14
CI_SERVER_VERSION_MINOR=9
CI_SERVER_VERSION_PATCH=5
CMAKE_PREFIX_PATH=/opt/trilinos:
CPATH=/opt/intel/compilers_and_libraries_2019.2.187/linux/tbb/include:/opt/intel/compilers_and_libraries_2019.2.187/linux/mkl/include
DEBIAN_FRONTEND=noninteractive
FF_CMD_DISABLE_DELAYED_ERROR_LEVEL_EXPANSION=false
FF_DISABLE_UMASK_FOR_DOCKER_EXECUTOR=false
FF_ENABLE_BASH_EXIT_CODE_CHECK=false
FF_ENABLE_JOB_CLEANUP=false
FF_KUBERNETES_HONOR_ENTRYPOINT=false
FF_NETWORK_PER_BUILD=false
FF_POSIXLY_CORRECT_ESCAPES=false
FF_SCRIPT_SECTIONS=false
FF_SKIP_NOOP_BUILD_STAGES=true
FF_USE_DIRECT_DOWNLOAD=true
FF_USE_DYNAMIC_TRACE_FORCE_SEND_INTERVAL=false
FF_USE_FASTZIP=false
FF_USE_IMPROVED_URL_MASKING=false
FF_USE_LEGACY_KUBERNETES_EXECUTION_STRATEGY=false
FF_USE_NEW_BASH_EVAL_STRATEGY=false
FF_USE_NEW_SHELL_ESCAPE=false
FF_USE_POWERSHELL_PATH_RESOLVER=false
FF_USE_WINDOWS_LEGACY_PROCESS_STRATEGY=true
GITLAB_CI=true
GITLAB_FEATURES=audit_events,blocked_issues,board_iteration_lists,code_owners,code_review_analytics,contribution_analytics,description_diffs,elastic_search,full_codequality_report,group_activity_analytics,group_bulk_edit,group_webhooks,issuable_default_templates,issue_weights,iterations,ldap_group_sync,member_lock,merge_request_approvers,milestone_charts,multiple_issue_assignees,multiple_ldap_servers,multiple_merge_request_assignees,multiple_merge_request_reviewers,project_merge_request_analytics,protected_refs_for_users,push_rules,repository_mirrors,resource_access_token,seat_link,scoped_issue_board,usage_quotas,visual_review_app,wip_limits,send_emails_from_admin_area,repository_size_limit,adjourned_deletion_for_projects_and_groups,admin_audit_log,alert_metric_upload,auditor_user,blocking_merge_requests,board_assignee_lists,board_milestone_lists,ci_cd_projects,ci_secrets_management,cluster_agents_gitops,cluster_agents_ci_impersonation,cluster_deployments,code_owner_approval_required,commit_committer_check,compliance_framework,custom_compliance_frameworks,cross_project_pipelines,custom_file_templates,custom_file_templates_for_namespace,custom_project_templates,cycle_analytics_for_groups,cycle_analytics_for_projects,db_load_balancing,default_branch_protection_restriction_in_groups,default_project_deletion_protection,disable_name_update_for_users,email_additional_text,epics,extended_audit_events,external_authorization_service_api_management,feature_flags_related_issues,feature_flags_code_references,file_locks,geo,generic_alert_fingerprinting,git_two_factor_enforcement,github_project_service_integration,group_allowed_email_domains,group_coverage_reports,group_forking_protection,group_merge_request_analytics,group_milestone_project_releases,group_project_templates,group_repository_analytics,group_saml,group_saml_group_sync,group_scoped_ci_variables,group_wikis,incident_sla,incident_metric_upload,ide_schema_config,issues_analytics,jira_issues_integration,ldap_group_sync_filter,merge_pipelines,merge_request_performance_metrics,admin_merge_request_approvers_rules,merge_trains,metrics_reports,multiple_alert_http_integrations,multiple_approval_rules,multiple_group_issue_boards,multiple_iteration_cadences,object_storage,operations_dashboard,package_forwarding,pages_size_limit,productivity_analytics,project_aliases,protected_environments,reject_unsigned_commits,required_ci_templates,scoped_labels,smartcard_auth,swimlanes,type_of_work_analytics,minimal_access_role,unprotection_restrictions,ci_project_subscriptions,incident_timeline_view,oncall_schedules,escalation_policies,export_user_permissions,zentao_issues_integration,group_ip_restriction,api_fuzzing,auto_rollback,cilium_alerts,cluster_image_scanning,external_status_checks,container_scanning,coverage_fuzzing,credentials_inventory,dast,dependency_scanning,devops_adoption,dora4_analytics,enforce_personal_access_token_expiration,enforce_ssh_key_expiration,enterprise_templates,environment_alerts,evaluate_group_level_compliance_pipeline,external_audit_events,group_ci_cd_analytics,group_level_compliance_dashboard,group_level_devops_adoption,incident_management,incident_timeline_events,inline_codequality,insights,instance_level_devops_adoption,issuable_health_status,jira_vulnerabilities_integration,jira_issue_association_enforcement,kubernetes_cluster_vulnerabilities,license_scanning,personal_access_token_expiration_policy,project_quality_summary,prometheus_alerts,pseudonymizer,quality_management,related_epics,release_evidence_test_artifacts,report_approver_rules,requirements,sast,sast_iac,sast_custom_rulesets,sast_fp_reduction,secret_detection,security_configuration_in_ui,security_dashboard,security_on_demand_scans,security_orchestration_policies,ssh_key_expiration_policy,status_page,subepics,threat_monitoring,vulnerability_auto_fix,vulnerability_finding_signatures
GITLAB_USER_EMAIL=r.boman@uliege.be
GITLAB_USER_ID=41
GITLAB_USER_LOGIN=rboman
GITLAB_USER_NAME=Boman Romain
GIT_LFS_SKIP_SMUDGE=1
GIT_STRATEGY=clone
GIT_SUBMODULE_STRATEGY=recursive
HOME=/root
HOSTNAME=runner-tpfqjh-d-project-397-concurrent-0
INCLUDE=/opt/gmsh/include:/opt/mumps-4.10.0/include:
LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.2.187/linux/tbb/lib/intel64/gcc4.7:/opt/intel/compilers_and_libraries_2019.2.187/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.2.187/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.2.187/linux/mkl/lib/intel64_lin
LIB=/opt/gmsh/lib:/opt/mumps-4.10.0/lib:
LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.2.187/linux/tbb/lib/intel64/gcc4.7:/opt/intel/compilers_and_libraries_2019.2.187/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.2.187/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.2.187/linux/mkl/lib/intel64_lin
MKLROOT=/opt/intel/compilers_and_libraries_2019.2.187/linux/mkl
MKL_THREADING_LAYER=GNU
NLSPATH=/opt/intel/compilers_and_libraries_2019.2.187/linux/mkl/lib/intel64_lin/locale/%l_%t/%N
OLDPWD=/
PATH=/opt/gmsh/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
PKG_CONFIG_PATH=/opt/intel/compilers_and_libraries_2019.2.187/linux/mkl/bin/pkgconfig
PWD=/builds/am-dept/waves
PYTHONPATH=/opt/gmsh/bin:/opt/trilinos/lib/python3.8/site-packages:
SHLVL=0
TBBROOT=/opt/intel/compilers_and_libraries_2019.2.187/linux/tbb
_=/usr/bin/printenv
$ cd build
$ ctest --output-on-failure -j 8 -R katoptron
Test project /builds/am-dept/waves/build
      Start 25: katoptron/tests/1_cube.py
      Start 26: katoptron/tests/1_cube_conv.py
      Start 27: katoptron/tests/1_cube_k.py
      Start 28: katoptron/tests/1_cube_rf.py
      Start 29: katoptron/tests/1_cube_tet.py
      Start 30: katoptron/tests/1_cube_tet_block.py
      Start 31: katoptron/tests/2_cubes.py
      Start 32: katoptron/tests/2_cubes_heat.py
 1/46 Test #27: katoptron/tests/1_cube_k.py ................................   Passed    2.84 sec
      Start 33: katoptron/tests/2_cubes_no_contact.py
 2/46 Test #28: katoptron/tests/1_cube_rf.py ...............................   Passed    2.84 sec
      Start 34: katoptron/tests/2_cubes_patch.py
 3/46 Test #25: katoptron/tests/1_cube.py ..................................   Passed    2.85 sec
      Start 35: katoptron/tests/2_cubes_patch_2_lvls.py
 4/46 Test #29: katoptron/tests/1_cube_tet.py ..............................   Passed    2.85 sec
      Start 36: katoptron/tests/2_cubes_patch_BraessSarazin.py
 5/46 Test #31: katoptron/tests/2_cubes.py .................................   Passed    2.90 sec
      Start 37: katoptron/tests/2_cubes_patch_IndefBlockDiagonal.py
 6/46 Test #26: katoptron/tests/1_cube_conv.py .............................   Passed    3.09 sec
      Start 38: katoptron/tests/2_cubes_patch_SIMPLE.py
 7/46 Test #32: katoptron/tests/2_cubes_heat.py ............................   Passed    3.32 sec
      Start 39: katoptron/tests/2_cubes_patch_SIMPLEC.py
 8/46 Test #33: katoptron/tests/2_cubes_no_contact.py ......................   Passed    2.16 sec
      Start 40: katoptron/tests/2_cubes_patch_Uzawa.py
 9/46 Test #36: katoptron/tests/2_cubes_patch_BraessSarazin.py .............   Passed    2.44 sec
      Start 41: katoptron/tests/2_cubes_sticking.py
10/46 Test #37: katoptron/tests/2_cubes_patch_IndefBlockDiagonal.py ........   Passed    2.70 sec
      Start 42: katoptron/tests/2_cubes_tet.py
11/46 Test #39: katoptron/tests/2_cubes_patch_SIMPLEC.py ...................   Passed    2.64 sec
      Start 43: katoptron/tests/3_cubes_partial_sticking.py
12/46 Test #35: katoptron/tests/2_cubes_patch_2_lvls.py ....................   Passed    3.73 sec
      Start 44: katoptron/tests/L_shape.py
13/46 Test #40: katoptron/tests/2_cubes_patch_Uzawa.py .....................   Passed    2.02 sec
      Start 45: katoptron/tests/M1_optic_test.py
14/46 Test #41: katoptron/tests/2_cubes_sticking.py ........................   Passed    1.77 sec
      Start 46: katoptron/tests/beam.py
15/46 Test #42: katoptron/tests/2_cubes_tet.py .............................   Passed    1.81 sec
      Start 47: katoptron/tests/plate.py
16/46 Test #30: katoptron/tests/1_cube_tet_block.py ........................   Passed    8.91 sec
      Start 48: katoptron/tests/1_cube.py-MPI2
17/46 Test #43: katoptron/tests/3_cubes_partial_sticking.py ................   Passed    3.46 sec
      Start 49: katoptron/tests/1_cube_conv.py-MPI2
18/46 Test #48: katoptron/tests/1_cube.py-MPI2 .............................   Passed    1.91 sec
      Start 50: katoptron/tests/1_cube_k.py-MPI2
19/46 Test #46: katoptron/tests/beam.py ....................................   Passed    4.46 sec
      Start 51: katoptron/tests/1_cube_rf.py-MPI2
20/46 Test #49: katoptron/tests/1_cube_conv.py-MPI2 ........................   Passed    2.58 sec
      Start 52: katoptron/tests/1_cube_tet.py-MPI2
21/46 Test #45: katoptron/tests/M1_optic_test.py ...........................   Passed    5.30 sec
      Start 53: katoptron/tests/1_cube_tet_block.py-MPI2
22/46 Test #47: katoptron/tests/plate.py ...................................   Passed    7.04 sec
      Start 54: katoptron/tests/2_cubes.py-MPI2
23/46 Test #38: katoptron/tests/2_cubes_patch_SIMPLE.py ....................   Passed   13.03 sec
      Start 55: katoptron/tests/2_cubes_heat.py-MPI2
24/46 Test #34: katoptron/tests/2_cubes_patch.py ...........................   Passed   13.35 sec
      Start 56: katoptron/tests/2_cubes_no_contact.py-MPI2
25/46 Test #51: katoptron/tests/1_cube_rf.py-MPI2 ..........................   Passed    4.78 sec
      Start 57: katoptron/tests/2_cubes_patch.py-MPI2
26/46 Test #52: katoptron/tests/1_cube_tet.py-MPI2 .........................   Passed    6.32 sec
      Start 58: katoptron/tests/2_cubes_patch_2_lvls.py-MPI2
27/46 Test #44: katoptron/tests/L_shape.py .................................   Passed   20.59 sec
      Start 59: katoptron/tests/2_cubes_patch_BraessSarazin.py-MPI2
28/46 Test #54: katoptron/tests/2_cubes.py-MPI2 ............................   Passed   12.84 sec
      Start 60: katoptron/tests/2_cubes_patch_IndefBlockDiagonal.py-MPI2
29/46 Test #56: katoptron/tests/2_cubes_no_contact.py-MPI2 .................   Passed   12.26 sec
      Start 61: katoptron/tests/2_cubes_patch_SIMPLE.py-MPI2
30/46 Test #50: katoptron/tests/1_cube_k.py-MPI2 ...........................   Passed   18.93 sec
      Start 62: katoptron/tests/2_cubes_patch_SIMPLEC.py-MPI2
31/46 Test #55: katoptron/tests/2_cubes_heat.py-MPI2 .......................   Passed   21.24 sec
      Start 63: katoptron/tests/2_cubes_patch_Uzawa.py-MPI2
32/46 Test #59: katoptron/tests/2_cubes_patch_BraessSarazin.py-MPI2 ........   Passed   24.72 sec
      Start 64: katoptron/tests/2_cubes_sticking.py-MPI2
33/46 Test #62: katoptron/tests/2_cubes_patch_SIMPLEC.py-MPI2 ..............   Passed   24.33 sec
      Start 65: katoptron/tests/2_cubes_tet.py-MPI2
34/46 Test #60: katoptron/tests/2_cubes_patch_IndefBlockDiagonal.py-MPI2 ...   Passed   33.51 sec
      Start 66: katoptron/tests/3_cubes_partial_sticking.py-MPI2
35/46 Test #63: katoptron/tests/2_cubes_patch_Uzawa.py-MPI2 ................   Passed   25.12 sec
      Start 67: katoptron/tests/L_shape.py-MPI2
36/46 Test #64: katoptron/tests/2_cubes_sticking.py-MPI2 ...................   Passed   12.71 sec
      Start 68: katoptron/tests/M1_optic_test.py-MPI2
37/46 Test #65: katoptron/tests/2_cubes_tet.py-MPI2 ........................   Passed   11.60 sec
      Start 69: katoptron/tests/beam.py-MPI2
38/46 Test #66: katoptron/tests/3_cubes_partial_sticking.py-MPI2 ...........   Passed   26.28 sec
      Start 70: katoptron/tests/plate.py-MPI2
39/46 Test #70: katoptron/tests/plate.py-MPI2 ..............................   Passed    9.42 sec
40/46 Test #68: katoptron/tests/M1_optic_test.py-MPI2 ......................   Passed   36.56 sec
41/46 Test #69: katoptron/tests/beam.py-MPI2 ...............................   Passed   36.06 sec
42/46 Test #58: katoptron/tests/2_cubes_patch_2_lvls.py-MPI2 ...............   Passed  105.81 sec
43/46 Test #61: katoptron/tests/2_cubes_patch_SIMPLE.py-MPI2 ...............   Passed  129.51 sec
44/46 Test #57: katoptron/tests/2_cubes_patch.py-MPI2 ......................   Passed  142.68 sec
45/46 Test #53: katoptron/tests/1_cube_tet_block.py-MPI2 ...................   Passed  148.70 sec
46/46 Test #67: katoptron/tests/L_shape.py-MPI2 ............................   Passed  106.37 sec

100% tests passed, 0 tests failed out of 46

Total Test time (real) = 168.87 sec
section_end:1666952681:step_script
section_start:1666952681:cleanup_file_variables
Cleaning up project directory and file based variables
section_end:1666952682:cleanup_file_variables
Job succeeded