[0KRunning with gitlab-runner 14.8.2 (c6e7e194)[0;m
[0K on vaillant 9gMCJBcQ[0;m
section_start:1648793802:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1648793802:resolve_secrets
[0Ksection_start:1648793802:prepare_executor
[0K[0K[36;1mPreparing the "docker" executor[0;m[0;m
[0KUsing Docker executor with image rboman/waves-py3:2020.3 ...[0;m
[0KPulling docker image rboman/waves-py3:2020.3 ...[0;m
[0KUsing docker image sha256:4862d8e53059bb6f19943a953c2c754e719f9602aed0e27ade650af466f494e6 for rboman/waves-py3:2020.3 with digest rboman/waves-py3@sha256:e6029c835bb5f5502dd6b24f6e42077138eafa8b4f84e76eff9dacbc1651e341 ...[0;m
section_end:1648793804:prepare_executor
[0Ksection_start:1648793804:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on runner-9gmcjbcq-project-397-concurrent-0 via vaillant...
section_end:1648793805:prepare_script
[0Ksection_start:1648793805:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mFetching changes with git depth set to 50...[0;m
Initialized empty Git repository in /builds/am-dept/waves/.git/
[32;1mCreated fresh repository.[0;m
[32;1mChecking out c3d0c4cd as v2.2.4...[0;m
[32;1mUpdating/initializing submodules recursively with git depth set to 50...[0;m
Submodule 'ext/amfe' (https://gitlab-ci-token:[MASKED]@gitlab.uliege.be/am-dept/amfe.git) registered for path 'ext/amfe'
Cloning into '/builds/am-dept/waves/ext/amfe'...
From https://gitlab.uliege.be/am-dept/amfe
* branch 073c11cb6ea51f23f4f8a915f4aee534fd6c5817 -> FETCH_HEAD
Submodule path 'ext/amfe': checked out '073c11cb6ea51f23f4f8a915f4aee534fd6c5817'
Entering 'ext/amfe'
section_end:1648793808:get_sources
[0Ksection_start:1648793808:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0KUsing docker image sha256:4862d8e53059bb6f19943a953c2c754e719f9602aed0e27ade650af466f494e6 for rboman/waves-py3:2020.3 with digest rboman/waves-py3@sha256:e6029c835bb5f5502dd6b24f6e42077138eafa8b4f84e76eff9dacbc1651e341 ...[0;m
[32;1m$ source /opt/intel/mkl/bin/mklvars.sh intel64[0;m
[32;1m$ source /opt/intel/tbb/bin/tbbvars.sh intel64[0;m
[32;1m$ echo $(nproc)[0;m
64
[32;1m$ printenv | sort[0;m
CI=true
CI_API_V4_URL=https://gitlab.uliege.be/api/v4
CI_BUILDS_DIR=/builds
CI_BUILD_BEFORE_SHA=0000000000000000000000000000000000000000
CI_BUILD_ID=18539
CI_BUILD_NAME=build-no-tlnos
CI_BUILD_REF=c3d0c4cd423761ecb93717c004b26d96c8473234
CI_BUILD_REF_NAME=v2.2.4
CI_BUILD_REF_SLUG=v2-2-4
CI_BUILD_STAGE=build
CI_BUILD_TAG=v2.2.4
CI_BUILD_TOKEN=[MASKED]
CI_COMMIT_AUTHOR=Romain Boman <romain.boman@gmail.com>
CI_COMMIT_BEFORE_SHA=0000000000000000000000000000000000000000
CI_COMMIT_DESCRIPTION=
CI_COMMIT_MESSAGE=remove luc's config (not needed anymore)
CI_COMMIT_REF_NAME=v2.2.4
CI_COMMIT_REF_PROTECTED=true
CI_COMMIT_REF_SLUG=v2-2-4
CI_COMMIT_SHA=c3d0c4cd423761ecb93717c004b26d96c8473234
CI_COMMIT_SHORT_SHA=c3d0c4cd
CI_COMMIT_TAG=v2.2.4
CI_COMMIT_TIMESTAMP=2022-03-31T16:46:50+02:00
CI_COMMIT_TITLE=remove luc's config (not needed anymore)
CI_CONCURRENT_ID=0
CI_CONCURRENT_PROJECT_ID=0
CI_CONFIG_PATH=.gitlab-ci.yml
CI_DEFAULT_BRANCH=master
CI_DEPENDENCY_PROXY_GROUP_IMAGE_PREFIX=gitlab.uliege.be:443/am-dept/dependency_proxy/containers
CI_DEPENDENCY_PROXY_PASSWORD=[MASKED]
CI_DEPENDENCY_PROXY_SERVER=gitlab.uliege.be:443
CI_DEPENDENCY_PROXY_USER=gitlab-ci-token
CI_DISPOSABLE_ENVIRONMENT=true
CI_JOB_ID=18539
CI_JOB_IMAGE=rboman/waves-py3:2020.3
CI_JOB_JWT=[MASKED]
CI_JOB_NAME=build-no-tlnos
CI_JOB_STAGE=build
CI_JOB_STARTED_AT=2022-04-01T06:16:41Z
CI_JOB_STATUS=running
CI_JOB_TOKEN=[MASKED]
CI_JOB_URL=https://gitlab.uliege.be/am-dept/waves/-/jobs/18539
CI_NODE_TOTAL=1
CI_PAGES_DOMAIN=gitlabpages.uliege.be
CI_PAGES_URL=https://am-dept.gitlabpages.uliege.be/waves
CI_PIPELINE_CREATED_AT=2022-04-01T06:16:35Z
CI_PIPELINE_ID=5765
CI_PIPELINE_IID=342
CI_PIPELINE_SOURCE=push
CI_PIPELINE_URL=https://gitlab.uliege.be/am-dept/waves/-/pipelines/5765
CI_PROJECT_DIR=/builds/am-dept/waves
CI_PROJECT_ID=397
CI_PROJECT_NAME=waves
CI_PROJECT_NAMESPACE=am-dept
CI_PROJECT_PATH=am-dept/waves
CI_PROJECT_PATH_SLUG=am-dept-waves
CI_PROJECT_REPOSITORY_LANGUAGES=python,c++,matlab,glsl,cmake
CI_PROJECT_ROOT_NAMESPACE=am-dept
CI_PROJECT_TITLE=waves
CI_PROJECT_URL=https://gitlab.uliege.be/am-dept/waves
CI_PROJECT_VISIBILITY=public
CI_REGISTRY=gitlab.uliege.be:5050
CI_REGISTRY_IMAGE=gitlab.uliege.be:5050/am-dept/waves
CI_REGISTRY_PASSWORD=[MASKED]
CI_REGISTRY_USER=gitlab-ci-token
CI_REPOSITORY_URL=https://gitlab-ci-token:[MASKED]@gitlab.uliege.be/am-dept/waves.git
CI_RUNNER_DESCRIPTION=vaillant
CI_RUNNER_EXECUTABLE_ARCH=linux/amd64
CI_RUNNER_ID=30
CI_RUNNER_REVISION=c6e7e194
CI_RUNNER_SHORT_TOKEN=9gMCJBcQ
CI_RUNNER_TAGS=mn2l, vaillant
CI_RUNNER_VERSION=14.8.2
CI_SERVER=yes
CI_SERVER_HOST=gitlab.uliege.be
CI_SERVER_NAME=GitLab
CI_SERVER_PORT=443
CI_SERVER_PROTOCOL=https
CI_SERVER_REVISION=e8d8b151f23
CI_SERVER_TLS_CA_FILE=/builds/am-dept/waves.tmp/CI_SERVER_TLS_CA_FILE
CI_SERVER_URL=https://gitlab.uliege.be
CI_SERVER_VERSION=14.0.12-ee
CI_SERVER_VERSION_MAJOR=14
CI_SERVER_VERSION_MINOR=0
CI_SERVER_VERSION_PATCH=12
CMAKE_PREFIX_PATH=/opt/trilinos:
CPATH=/opt/intel/compilers_and_libraries_2019.2.187/linux/tbb/include:/opt/intel/compilers_and_libraries_2019.2.187/linux/mkl/include
DEBIAN_FRONTEND=noninteractive
FF_CMD_DISABLE_DELAYED_ERROR_LEVEL_EXPANSION=false
FF_DISABLE_UMASK_FOR_DOCKER_EXECUTOR=false
FF_ENABLE_BASH_EXIT_CODE_CHECK=false
FF_ENABLE_JOB_CLEANUP=false
FF_GITLAB_REGISTRY_HELPER_IMAGE=true
FF_KUBERNETES_HONOR_ENTRYPOINT=false
FF_NETWORK_PER_BUILD=false
FF_SCRIPT_SECTIONS=false
FF_SKIP_NOOP_BUILD_STAGES=true
FF_USE_DIRECT_DOWNLOAD=true
FF_USE_DYNAMIC_TRACE_FORCE_SEND_INTERVAL=false
FF_USE_FASTZIP=false
FF_USE_LEGACY_KUBERNETES_EXECUTION_STRATEGY=false
FF_USE_NEW_BASH_EVAL_STRATEGY=false
FF_USE_NEW_SHELL_ESCAPE=false
FF_USE_POWERSHELL_PATH_RESOLVER=false
FF_USE_WINDOWS_LEGACY_PROCESS_STRATEGY=true
GITLAB_CI=true
GITLAB_FEATURES=audit_events,blocked_issues,board_iteration_lists,code_owners,code_review_analytics,contribution_analytics,description_diffs,elastic_search,full_codequality_report,group_activity_analytics,group_bulk_edit,group_webhooks,issuable_default_templates,issue_weights,iterations,ldap_group_sync,member_lock,merge_request_approvers,milestone_charts,multiple_issue_assignees,multiple_ldap_servers,multiple_merge_request_assignees,multiple_merge_request_reviewers,project_merge_request_analytics,protected_refs_for_users,push_rules,repository_mirrors,repository_size_limit,resource_access_token,seat_link,send_emails_from_admin_area,scoped_issue_board,usage_quotas,visual_review_app,wip_limits,adjourned_deletion_for_projects_and_groups,admin_audit_log,auditor_user,blocking_merge_requests,board_assignee_lists,board_milestone_lists,ci_cd_projects,ci_secrets_management,cluster_agents,cluster_deployments,code_owner_approval_required,commit_committer_check,compliance_framework,custom_compliance_frameworks,cross_project_pipelines,custom_file_templates,custom_file_templates_for_namespace,custom_project_templates,cycle_analytics_for_groups,cycle_analytics_for_projects,db_load_balancing,default_branch_protection_restriction_in_groups,default_project_deletion_protection,disable_name_update_for_users,email_additional_text,epics,extended_audit_events,external_authorization_service_api_management,feature_flags_related_issues,file_locks,geo,generic_alert_fingerprinting,git_two_factor_enforcement,github_project_service_integration,group_allowed_email_domains,group_coverage_reports,group_forking_protection,group_ip_restriction,group_merge_request_analytics,group_merge_request_approval_settings,group_milestone_project_releases,group_project_templates,group_repository_analytics,group_saml,group_saml_group_sync,group_scoped_ci_variables,group_wikis,incident_sla,incident_metric_upload,ide_schema_config,issues_analytics,jira_issues_integration,ldap_group_sync_filter,merge_pipelines,merge_request_performance_metrics,admin_merge_request_approvers_rules,merge_trains,metrics_reports,multiple_alert_http_integrations,multiple_approval_rules,multiple_group_issue_boards,multiple_iteration_cadences,object_storage,operations_dashboard,package_forwarding,pages_size_limit,productivity_analytics,project_aliases,protected_environments,reject_unsigned_commits,required_ci_templates,scoped_labels,smartcard_auth,swimlanes,type_of_work_analytics,minimal_access_role,unprotection_restrictions,ci_project_subscriptions,incident_timeline_view,oncall_schedules,escalation_policies,export_user_permissions,api_fuzzing,auto_rollback,cilium_alerts,compliance_approval_gates,container_scanning,coverage_fuzzing,credentials_inventory,dast,dependency_scanning,devops_adoption,dora4_analytics,enforce_personal_access_token_expiration,enforce_ssh_key_expiration,enterprise_templates,environment_alerts,evaluate_group_level_compliance_pipeline,group_ci_cd_analytics,group_level_compliance_dashboard,group_level_devops_adoption,incident_management,inline_codequality,insights,instance_level_devops_adoption,issuable_health_status,jira_vulnerabilities_integration,jira_issue_association_enforcement,license_scanning,personal_access_token_expiration_policy,prometheus_alerts,pseudonymizer,quality_management,release_evidence_test_artifacts,report_approver_rules,requirements,sast,sast_custom_rulesets,secret_detection,security_dashboard,security_on_demand_scans,security_orchestration_policies,status_page,subepics,threat_monitoring,vulnerability_auto_fix,vulnerability_finding_signatures
GITLAB_USER_EMAIL=r.boman@uliege.be
GITLAB_USER_ID=41
GITLAB_USER_LOGIN=R.Boman
GITLAB_USER_NAME=Boman Romain
GIT_LFS_SKIP_SMUDGE=1
GIT_STRATEGY=clone
GIT_SUBMODULE_STRATEGY=recursive
HOME=/root
HOSTNAME=runner-9gmcjbcq-project-397-concurrent-0
INCLUDE=/opt/gmsh/include:/opt/mumps-4.10.0/include:
LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.2.187/linux/tbb/lib/intel64/gcc4.7:/opt/intel/compilers_and_libraries_2019.2.187/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.2.187/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.2.187/linux/mkl/lib/intel64_lin
LIB=/opt/gmsh/lib:/opt/mumps-4.10.0/lib:
LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.2.187/linux/tbb/lib/intel64/gcc4.7:/opt/intel/compilers_and_libraries_2019.2.187/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.2.187/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.2.187/linux/mkl/lib/intel64_lin
MKLROOT=/opt/intel/compilers_and_libraries_2019.2.187/linux/mkl
MKL_THREADING_LAYER=GNU
NLSPATH=/opt/intel/compilers_and_libraries_2019.2.187/linux/mkl/lib/intel64_lin/locale/%l_%t/%N
OLDPWD=/
PATH=/opt/gmsh/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
PKG_CONFIG_PATH=/opt/intel/compilers_and_libraries_2019.2.187/linux/mkl/bin/pkgconfig
PWD=/builds/am-dept/waves
PYTHONPATH=/opt/gmsh/bin:/opt/trilinos/lib/python3.8/site-packages:
SHLVL=0
TBBROOT=/opt/intel/compilers_and_libraries_2019.2.187/linux/tbb
_=/usr/bin/printenv
[32;1m$ git submodule init[0;m
[32;1m$ git submodule update[0;m
[32;1m$ rm -rf build workspace[0;m
[32;1m$ mkdir build[0;m
[32;1m$ cd build[0;m
[32;1m$ cmake -Wno-dev -C ../CMake/disable-trilinos.cmake ..[0;m
loading initial cache file ../CMake/disable-trilinos.cmake
-- The C compiler identification is GNU 9.3.0
-- The CXX compiler identification is GNU 9.3.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Python3: /usr/bin/python3.8 (found version "3.8.2") found components: Interpreter Development
-- PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.8
-- PYTHON_LIBRARIES:FILEPATH=/usr/lib/x86_64-linux-gnu/libpython3.8.so
-- PYTHON_INCLUDE_PATH:FILEPATH=/usr/include/python3.8
-- PYTHON_FRAMEWORK_INCLUDES=
-- PYTHONLIBS_VERSION_STRING=3.8.2
-- Python_FRAMEWORKS=
-- Found SWIG: /usr/bin/swig4.0 (found version "4.0.1")
-- Found Doxygen: /usr/bin/doxygen (found version "1.8.17") found components: doxygen dot
-- PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.8
-- PYTHON_LIBRARIES:FILEPATH=/usr/lib/x86_64-linux-gnu/libpython3.8.so
-- PYTHON_INCLUDE_PATH:FILEPATH=/usr/include/python3.8
-- PYTHON_FRAMEWORK_INCLUDES=
-- PYTHONLIBS_VERSION_STRING=3.8.2
-- Python_FRAMEWORKS=
Doxygen needs to be installed to generate the doxygen documentation
-- Adding test fwk/tests/timers.py
-- Found TBB: optimized;/opt/intel/compilers_and_libraries_2019.2.187/linux/tbb/lib/intel64/gcc4.7/libtbb.so;debug;/opt/intel/compilers_and_libraries_2019.2.187/linux/tbb/lib/intel64/gcc4.7/libtbb_debug.so
-- MKL_INCLUDE_DIRS=/opt/intel/compilers_and_libraries_2019.2.187/linux/mkl/include
-- MKL_LIBRARIES=/opt/intel/compilers_and_libraries_2019.2.187/linux/mkl/lib/intel64_lin/libmkl_rt.so
-- Found Intel MKL
-- Found EIGEN: /usr/include/eigen3 (found suitable version "3.3.7", minimum required is "3.3.4")
-- Linking Eigen with MKL
-- Found MUMPS: /opt/mumps-4.10.0/include
-- Adding test tbox/tests/basicops.py
-- Adding test tbox/tests/fem/elem1s.py
-- Adding test tbox/tests/gmshio.py
-- Adding test tbox/tests/meshDeformation.py
-- Adding test tbox/tests/meshDeformation3.py
-- Adding test tbox/tests/mpi/helloworld.py
-- The imported target "vtkParseOGLExt" references the file
"/usr/bin/vtkParseOGLExt-7.1"
but this file does not exist. Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
"/usr/lib/cmake/vtk-7.1/VTKTargets.cmake"
but not all the files it references.
-- The imported target "vtkRenderingPythonTkWidgets" references the file
"/usr/lib/x86_64-linux-gnu/libvtkRenderingPythonTkWidgets.so"
but this file does not exist. Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
"/usr/lib/cmake/vtk-7.1/VTKTargets.cmake"
but not all the files it references.
-- The imported target "vtk" references the file
"/usr/bin/vtk"
but this file does not exist. Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
"/usr/lib/cmake/vtk-7.1/VTKTargets.cmake"
but not all the files it references.
-- The imported target "pvtk" references the file
"/usr/bin/pvtk"
but this file does not exist. Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
"/usr/lib/cmake/vtk-7.1/VTKTargets.cmake"
but not all the files it references.
-- VTK_LIBRARIES1 = vtkChartsCore;vtkCommonColor;vtkCommonCore;vtksys;vtkCommonDataModel;vtkCommonMath;vtkCommonMisc;vtkCommonSystem;vtkCommonTransforms;vtkCommonExecutionModel;vtkFiltersGeneral;vtkCommonComputationalGeometry;vtkFiltersCore;vtkInfovisCore;vtkFiltersExtraction;vtkFiltersStatistics;vtkImagingFourier;vtkImagingCore;vtkalglib;vtkRenderingContext2D;vtkRenderingCore;vtkFiltersGeometry;vtkFiltersSources;vtkRenderingFreeType;/usr/lib/x86_64-linux-gnu/libfreetype.so;/usr/lib/x86_64-linux-gnu/libz.so;vtkDICOMParser;vtkDomainsChemistry;vtkIOLegacy;vtkIOCore;vtkIOXMLParser;/usr/lib/x86_64-linux-gnu/libexpat.so;vtkDomainsChemistryOpenGL2;vtkRenderingOpenGL2;vtkIOImage;vtkmetaio;/usr/lib/x86_64-linux-gnu/libjpeg.so;/usr/lib/x86_64-linux-gnu/libpng.so;/usr/lib/x86_64-linux-gnu/libtiff.so;vtkFiltersAMR;vtkIOXML;vtkParallelCore;vtkFiltersFlowPaths;vtkFiltersGeneric;vtkFiltersHybrid;vtkImagingSources;vtkFiltersHyperTree;vtkFiltersImaging;vtkImagingGeneral;vtkFiltersModeling;vtkFiltersParallel;vtkFiltersParallelDIY2;vtkParallelMPI;vtkFiltersParallelFlowPaths;vtkFiltersParallelGeometry;vtkFiltersParallelImaging;vtkFiltersParallelMPI;vtkFiltersParallelStatistics;vtkFiltersPoints;vtkFiltersProgrammable;vtkFiltersPython;/usr/lib/x86_64-linux-gnu/libpython3.8.so;vtkWrappingPythonCore;vtkWrappingTools;vtkFiltersReebGraph;vtkFiltersSMP;vtkFiltersSelection;vtkFiltersTexture;vtkFiltersVerdict;verdict;vtkGUISupportQt;vtkInteractionStyle;vtkGUISupportQtSQL;vtkIOSQL;sqlite3;vtkGeovisCore;vtkInfovisLayout;vtkImagingHybrid;vtkInteractionWidgets;vtkImagingColor;vtkRenderingAnnotation;vtkRenderingVolume;vtkViewsCore;vtkproj4;vtkIOAMR;/usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so;/usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5_hl.so;vtkIOEnSight;vtkIOExodus;vtkexoIIc;/usr/lib/x86_64-linux-gnu/libnetcdf_c++.so;/usr/lib/x86_64-linux-gnu/libnetcdf.so;vtkIOExport;vtkRenderingGL2PSOpenGL2;/usr/lib/x86_64-linux-gnu/libgl2ps.so;vtkIOFFMPEG;vtkIOMovie;/usr/lib/x86_64-linux-gnu/libtheoraenc.so;/usr/lib/x86_64-linux-gnu/libtheoradec.so;/usr/lib/x86_64-linux-gnu/libogg.so;vtkIOGDAL;vtkIOGeoJSON;/usr/lib/x86_64-linux-gnu/libjsoncpp.so;vtkIOGeometry;vtkIOImport;vtkIOInfovis;/usr/lib/x86_64-linux-gnu/libxml2.so;vtkIOLSDyna;vtkIOMINC;vtkIOMPIImage;vtkIOMPIParallel;vtkIOParallel;vtkIONetCDF;vtkIOMySQL;vtkIOODBC;vtkIOPLY;vtkIOParallelExodus;vtkIOParallelLSDyna;vtkIOParallelNetCDF;vtkIOParallelXML;vtkIOPostgreSQL;vtkIOTecplotTable;vtkIOVPIC;VPIC;vtkIOVideo;vtkIOXdmf2;vtkxdmf2;vtkImagingMath;vtkImagingMorphological;vtkImagingStatistics;vtkImagingStencil;vtkInfovisBoostGraphAlgorithms;vtkInteractionImage;vtkLocalExample;vtkParallelMPI4Py;vtkPythonInterpreter;vtkRenderingContextOpenGL2;vtkRenderingExternal;vtkRenderingFreeTypeFontConfig;vtkRenderingImage;vtkRenderingLICOpenGL2;vtkRenderingLOD;vtkRenderingLabel;vtkRenderingMatplotlib;vtkRenderingParallel;vtkRenderingParallelLIC;vtkRenderingSceneGraph;vtkRenderingVolumeAMR;vtkRenderingVolumeOpenGL2;vtkTestingGenericBridge;vtkTestingIOSQL;vtkTestingRendering;vtkViewsContext2D;vtkViewsGeovis;vtkViewsInfovis;vtkWrappingJava
-- vtkParallelMPI available!
-- VTK_DEFINITIONS =
-- VTK_REQUIRED_CXX_FLAGS =
-- VTK_REQUIRED_EXE_LINKER_FLAGS =
-- VTK_REQUIRED_SHARED_LINKER_FLAGS =
-- VTK_USE_FILE = /usr/lib/cmake/vtk-7.1/UseVTK.cmake
-- VTK_INCLUDE_DIR =
-- VTK_LIBRARIES = vtkIOXML;vtkCommonCore;vtksys;vtkCommonDataModel;vtkCommonMath;vtkCommonMisc;vtkCommonSystem;vtkCommonTransforms;vtkCommonExecutionModel;vtkIOCore;/usr/lib/x86_64-linux-gnu/libz.so;vtkIOXMLParser;/usr/lib/x86_64-linux-gnu/libexpat.so;vtkParallelMPI;vtkParallelCore;vtkIOLegacy;vtkIOParallelXML
-- Adding test tboxVtk/tests/vtkio.py
-- PROJECT: Waves
-- * SYSTEM NAME="Linux"
-- * CXX COMPILER: GNU
-- * CXX STANDARD: 11
-- * INSTALL DIR: /root/.local/lib/python3.8/site-packages/waves
-- * BUILD TYPE: Release
-- * VTK SUPPORT: ON
-- * MKL SUPPORT: ON
-- * MUMPS SUPPORT: ON
-- Adding test flow/tests/adjoint.py
-- Adding test flow/tests/adjoint3.py
-- Adding test flow/tests/bli.py
-- Adding test flow/tests/cylinder.py
-- Adding test flow/tests/cylinder2D5.py
-- Adding test flow/tests/cylinder3.py
-- Adding test flow/tests/lift.py
-- Adding test flow/tests/lift3.py
-- Adding test flow/tests/meshDef.py
-- Adding test flow/tests/meshDef3.py
-- Adding test flow/tests/nonlift.py
-- Adding test heat/tests/basics/anisotropy.py
-- Adding test heat/tests/basics/dirichletx.py
-- Adding test heat/tests/basics/dirichletx_stru.py
-- Adding test heat/tests/basics/dirichlety.py
-- Adding test heat/tests/basics/mat2hole.py
-- Adding test heat/tests/basics/source.py
-- Adding test heat/tests/directors/material.py
-- Adding test heat/tests/directors/neumann.py
-- Adding test heat/tests/directors/source.py
-- Adding test heat/tests/fe2/Lmpi.py
-- Adding test heat/tests/fe2/heat_mpi.py
-- Adding test heat/tests/fe2/micro.py
-- Adding test heat/tests/nonlinear/mat2vark.py
-- Adding test heat/tests/periodic/honeycomb.py
-- Adding test heat/tests/periodic/lincomb.py
-- Adding test heat/tests/periodic/lincomb_fast.py
-- Adding test mirrors/tests/mparams/loop.py
-- Adding test mirrors/tests/mparams/loop2.py
-- Adding test mirrors/tests/mparams/loop3.py
-- Adding test mirrors/tests/mparams/loop4.py
-- Adding test mirrors/tests/mparams/loop5.py
-- Adding test mirrors/tests/mparams/loop6.py
-- Adding test mirrors/tests/mparams/loop7.py
-- Adding test mirrors/tests/mparams/loop8.py
-- Adding test mirrors/tests/mparams/mparams.py
-- Adding test mirrors/tests/simple.py
-- Adding test waves/tests/mat1/interf1.py
-- Adding test waves/tests/mat1/interf2.py
-- Adding test waves/tests/mat1/planewave.py
-- Adding test waves/tests/mat1/pulse.py
-- Adding test waves/tests/mat1/sinsrc.py
-- Adding test waves/tests/mat2/interf1.py
-- Adding test waves/tests/mat2/pulse.py
-- Adding test waves/tests/mat2/reflex.py
-- Adding test waves/tests/mat2/sinsrc.py
-- PROJECT: Waves
-- * SYSTEM NAME="Linux"
-- * CXX COMPILER: GNU
-- * CXX STANDARD: 11
-- * INSTALL DIR: /root/.local/lib/python3.8/site-packages/waves
-- * BUILD TYPE: Release
-- * VTK SUPPORT: ON
-- * MKL SUPPORT: ON
-- * MUMPS SUPPORT: ON
-- Configuring done
-- Generating done
-- Build files have been written to: /builds/am-dept/waves/build
[32;1m$ make -j 8[0;m
Scanning dependencies of target fwkw_swig_compilation
Scanning dependencies of target heatw_swig_compilation
Scanning dependencies of target floww_swig_compilation
Scanning dependencies of target mirrorsw_swig_compilation
Scanning dependencies of target tboxVtkw_swig_compilation
Scanning dependencies of target fwk
Scanning dependencies of target paramsCVT
Scanning dependencies of target tboxw_swig_compilation
[ 1%] Swig compile /builds/am-dept/waves/ext/amfe/fwk/_src/fwkw.i for python
[ 2%] Swig compile /builds/am-dept/waves/mirrors/_src/mirrorsw.i for python
[ 2%] Building CXX object params/CVT/src/CMakeFiles/paramsCVT.dir/cvt.cpp.o
[ 3%] Swig compile /builds/am-dept/waves/ext/amfe/tboxVtk/_src/tboxVtkw.i for python
[ 4%] Swig compile /builds/am-dept/waves/flow/_src/floww.i for python
[ 4%] Building CXX object ext/amfe/fwk/src/CMakeFiles/fwk.dir/fwk.cpp.o
[ 4%] Swig compile /builds/am-dept/waves/heat/_src/heatw.i for python
[ 4%] Swig compile /builds/am-dept/waves/ext/amfe/tbox/_src/tboxw.i for python
[ 5%] Building CXX object ext/amfe/fwk/src/CMakeFiles/fwk.dir/wExtract.cpp.o
[ 5%] Built target fwkw_swig_compilation
Scanning dependencies of target paramsCVTw_swig_compilation
[ 5%] Swig compile /builds/am-dept/waves/params/CVT/_src/paramsCVTw.i for python
[ 6%] Building CXX object ext/amfe/fwk/src/CMakeFiles/fwk.dir/wHMSTime.cpp.o
[ 6%] Built target paramsCVTw_swig_compilation
[ 6%] Building CXX object ext/amfe/fwk/src/CMakeFiles/fwk.dir/wObject.cpp.o
/builds/am-dept/waves/params/CVT/src/cvt.cpp: In function 'void cvt(int, int, int, int, int, int, int, int, int*, double*, int*, double*, double*)':
/builds/am-dept/waves/params/CVT/src/cvt.cpp:331:19: warning: 'seed_base' may be used uninitialized in this function [-Wmaybe-uninitialized]
331 | *seed = seed_base;
| ~~~~~~^~~~~~~~~~~
[ 7%] Building CXX object params/CVT/src/CMakeFiles/paramsCVT.dir/interface.cpp.o
[ 8%] Building CXX object ext/amfe/fwk/src/CMakeFiles/fwk.dir/wObserver.cpp.o
Scanning dependencies of target wavesw_swig_compilation
[ 9%] Swig compile /builds/am-dept/waves/waves/_src/wavesw.i for python
[ 10%] Building CXX object ext/amfe/fwk/src/CMakeFiles/fwk.dir/wTime.cpp.o
[ 11%] Linking CXX shared library ../../../bin/libparamsCVT.so
[ 11%] Built target tboxVtkw_swig_compilation
[ 11%] Built target paramsCVT
[ 11%] Building CXX object ext/amfe/fwk/src/CMakeFiles/fwk.dir/wTimer.cpp.o
[ 12%] Building CXX object ext/amfe/fwk/src/CMakeFiles/fwk.dir/wTimers.cpp.o
Scanning dependencies of target _paramsCVTw
[ 13%] Building CXX object params/CVT/_src/CMakeFiles/_paramsCVTw.dir/__/__/__/bin/paramsCVTwPYTHON_wrap.cxx.o
[ 14%] Building CXX object ext/amfe/fwk/src/CMakeFiles/fwk.dir/wTimes.cpp.o
[ 14%] Built target heatw_swig_compilation
[ 14%] Linking CXX shared library ../../../../bin/libfwk.so
[ 14%] Built target fwk
Scanning dependencies of target _fwkw
[ 15%] Building CXX object ext/amfe/fwk/_src/CMakeFiles/_fwkw.dir/__/__/__/__/bin/fwkwPYTHON_wrap.cxx.o
[ 15%] Building CXX object ext/amfe/fwk/_src/CMakeFiles/_fwkw.dir/wCppBuf2Py.cpp.o
[ 15%] Built target mirrorsw_swig_compilation
Scanning dependencies of target tbox
[ 15%] Built target floww_swig_compilation
[ 16%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/eigen_extra.cpp.o
[ 17%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wCache.cpp.o
[ 17%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wCacheHex8.cpp.o
[ 18%] Linking CXX shared module ../../../bin/_paramsCVTw.so
[ 19%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wCacheLine2.cpp.o
[ 19%] Built target _paramsCVTw
/builds/am-dept/waves/build/bin/fwkwPYTHON_wrap.cxx: In function 'PyObject* _wrap_delete_Time(PyObject*, PyObject*)':
/builds/am-dept/waves/build/bin/fwkwPYTHON_wrap.cxx:5614:16: warning: deleting object of abstract class type 'fwk::Time' which has non-virtual destructor will cause undefined behavior [-Wdelete-non-virtual-dtor]
5614 | delete arg1;
| ^~~~
[ 20%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wCachePoint1.cpp.o
[ 20%] Built target wavesw_swig_compilation
[ 20%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wCacheQuad4.cpp.o
[ 21%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wCacheTetra4.cpp.o
[ 22%] Linking CXX shared module ../../../../bin/_fwkw.so
[ 22%] Built target _fwkw
[ 23%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wCacheTri3.cpp.o
[ 23%] Built target tboxw_swig_compilation
[ 23%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wElement.cpp.o
[ 24%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wFct0.cpp.o
[ 24%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wFct1.cpp.o
[ 25%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wFct2.cpp.o
[ 26%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wGauss.cpp.o
[ 26%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wGaussHex8.cpp.o
[ 27%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wGaussLine2.cpp.o
[ 28%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wGaussQuad4.cpp.o
[ 28%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wGaussTetra4.cpp.o
[ 29%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wGaussTri3.cpp.o
[ 30%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wGmres.cpp.o
[ 30%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wGmshExport.cpp.o
[ 31%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wGmshImport.cpp.o
[ 32%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wGroup.cpp.o
[ 32%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wGroups.cpp.o
[ 33%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wHex8.cpp.o
[ 34%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wLine2.cpp.o
[ 34%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wLinearSolver.cpp.o
[ 35%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wLinesearch.cpp.o
[ 36%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wMshConvert.cpp.o
[ 36%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wMshCrack.cpp.o
[ 37%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wMshData.cpp.o
[ 37%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wMshDeform.cpp.o
[ 38%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wMshExport.cpp.o
[ 39%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wMshImport.cpp.o
[ 39%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wMumps.cpp.o
[ 40%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wNode.cpp.o
[ 41%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wPardiso.cpp.o
[ 41%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wPoint1.cpp.o
[ 42%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wQuad4.cpp.o
[ 43%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wResults.cpp.o
[ 43%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wSfHex8.cpp.o
[ 44%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wSfLine2.cpp.o
[ 45%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wSfQuad4.cpp.o
[ 45%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wSfTetra4.cpp.o
[ 46%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wSfTri3.cpp.o
[ 47%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wSparseLu.cpp.o
[ 47%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wTag.cpp.o
[ 48%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wTetra4.cpp.o
[ 49%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wTri3.cpp.o
[ 49%] Building CXX object ext/amfe/tbox/src/CMakeFiles/tbox.dir/wUnitTest.cpp.o
[ 50%] Linking CXX shared library ../../../../bin/libtbox.so
[ 50%] Built target tbox
Scanning dependencies of target tboxVtk
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[ 50%] Building CXX object ext/amfe/tboxVtk/src/CMakeFiles/tboxVtk.dir/wVtkExport.cpp.o
Scanning dependencies of target waves
[ 51%] Building CXX object ext/amfe/tbox/_src/CMakeFiles/_tboxw.dir/__/__/__/__/bin/tboxwPYTHON_wrap.cxx.o
Scanning dependencies of target mirrors
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[ 52%] Building CXX object waves/src/CMakeFiles/waves.dir/wDisplayHook.cpp.o
[ 53%] Building CXX object waves/src/CMakeFiles/waves.dir/wBoundary.cpp.o
[ 53%] Building CXX object waves/src/CMakeFiles/waves.dir/wForwardEuler.cpp.o
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Scanning dependencies of target flow
[ 56%] Building CXX object flow/src/CMakeFiles/flow.dir/wAdjoint.cpp.o
[ 56%] Building CXX object flow/src/CMakeFiles/flow.dir/wAssign.cpp.o
[ 57%] Building CXX object waves/src/CMakeFiles/waves.dir/wMedium.cpp.o
[ 58%] Building CXX object mirrors/src/CMakeFiles/mirrors.dir/wMSurface.cpp.o
[ 59%] Building CXX object waves/src/CMakeFiles/waves.dir/wNewmark.cpp.o
[ 59%] Building CXX object heat/src/CMakeFiles/heat.dir/wCompiledFct.cpp.o
[ 59%] Building CXX object mirrors/src/CMakeFiles/mirrors.dir/wMedium.cpp.o
[ 60%] Building CXX object heat/src/CMakeFiles/heat.dir/wDirichlet.cpp.o
[ 61%] Linking CXX shared library ../../../../bin/libtboxVtk.so
[ 62%] Building CXX object mirrors/src/CMakeFiles/mirrors.dir/wProblem.cpp.o
[ 62%] Building CXX object heat/src/CMakeFiles/heat.dir/wDisplayHook.cpp.o
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[ 63%] Building CXX object mirrors/src/CMakeFiles/mirrors.dir/wSolver.cpp.o
[ 63%] Building CXX object mirrors/src/CMakeFiles/mirrors.dir/wTDirichlet.cpp.o
[ 63%] Building CXX object waves/src/CMakeFiles/waves.dir/wProblem.cpp.o
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[ 66%] Building CXX object mirrors/src/CMakeFiles/mirrors.dir/wTNeumann.cpp.o
[ 67%] Building CXX object mirrors/src/CMakeFiles/mirrors.dir/wTSource.cpp.o
[ 68%] Building CXX object flow/src/CMakeFiles/flow.dir/wBlowing.cpp.o
[ 69%] Building CXX object waves/src/CMakeFiles/waves.dir/wRungeKutta.cpp.o
[ 69%] Building CXX object mirrors/src/CMakeFiles/mirrors.dir/wThermoMecaTerm.cpp.o
[ 70%] Building CXX object mirrors/src/CMakeFiles/mirrors.dir/wuDirichlet.cpp.o
[ 70%] Building CXX object mirrors/src/CMakeFiles/mirrors.dir/wuNeumann.cpp.o
[ 71%] Building CXX object flow/src/CMakeFiles/flow.dir/wBlowingResidual.cpp.o
[ 71%] Building CXX object heat/src/CMakeFiles/heat.dir/wMedium.cpp.o
[ 72%] Building CXX object waves/src/CMakeFiles/waves.dir/wSource.cpp.o
[ 73%] Building CXX object heat/src/CMakeFiles/heat.dir/wPeriodic.cpp.o
[ 74%] Building CXX object heat/src/CMakeFiles/heat.dir/wProblem.cpp.o
[ 74%] Building CXX object heat/src/CMakeFiles/heat.dir/wSolver.cpp.o
[ 74%] Building CXX object flow/src/CMakeFiles/flow.dir/wBoundary.cpp.o
[ 75%] Linking CXX shared library ../../bin/libmirrors.so
[ 76%] Building CXX object heat/src/CMakeFiles/heat.dir/wSource.cpp.o
[ 76%] Built target mirrors
Scanning dependencies of target _tboxVtkw
[ 76%] Building CXX object ext/amfe/tboxVtk/_src/CMakeFiles/_tboxVtkw.dir/__/__/__/__/bin/tboxVtkwPYTHON_wrap.cxx.o
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Scanning dependencies of target _mirrorsw
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[ 79%] Building CXX object flow/src/CMakeFiles/flow.dir/wF0Ps.cpp.o
[ 79%] Building CXX object flow/src/CMakeFiles/flow.dir/wF1Ct.cpp.o
[ 80%] Building CXX object waves/src/CMakeFiles/waves.dir/wWaveTerm.cpp.o
[ 81%] Building CXX object flow/src/CMakeFiles/flow.dir/wF1El.cpp.o
[ 82%] Linking CXX shared module ../../../../bin/_tboxVtkw.so
[ 82%] Built target _tboxVtkw
[ 83%] Building CXX object flow/src/CMakeFiles/flow.dir/wFpeLSFunction.cpp.o
[ 83%] Building CXX object flow/src/CMakeFiles/flow.dir/wFreestream.cpp.o
[ 84%] Linking CXX shared library ../../bin/libheat.so
[ 85%] Building CXX object flow/src/CMakeFiles/flow.dir/wFreestreamResidual.cpp.o
[ 85%] Built target heat
[ 86%] Building CXX object flow/src/CMakeFiles/flow.dir/wKutta.cpp.o
[ 86%] Building CXX object flow/src/CMakeFiles/flow.dir/wKuttaElement.cpp.o
[ 87%] Building CXX object flow/src/CMakeFiles/flow.dir/wKuttaResidual.cpp.o
[ 88%] Building CXX object flow/src/CMakeFiles/flow.dir/wLoadFunctional.cpp.o
[ 89%] Linking CXX shared library ../../bin/libwaves.so
[ 89%] Built target waves
Scanning dependencies of target _heatw
[ 89%] Building CXX object heat/_src/CMakeFiles/_heatw.dir/__/__/bin/heatwPYTHON_wrap.cxx.o
[ 89%] Building CXX object flow/src/CMakeFiles/flow.dir/wMedium.cpp.o
[ 90%] Building CXX object flow/src/CMakeFiles/flow.dir/wNewton.cpp.o
[ 91%] Building CXX object flow/src/CMakeFiles/flow.dir/wPicard.cpp.o
[ 91%] Building CXX object flow/src/CMakeFiles/flow.dir/wPotentialResidual.cpp.o
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[ 92%] Building CXX object flow/src/CMakeFiles/flow.dir/wSolver.cpp.o
[ 92%] Linking CXX shared module ../../bin/_mirrorsw.so
[ 92%] Built target _mirrorsw
Scanning dependencies of target waves1
[ 92%] Building CXX object waves/exe/CMakeFiles/waves1.dir/main.cpp.o
[ 93%] Building CXX object flow/src/CMakeFiles/flow.dir/wWake.cpp.o
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[ 94%] Linking CXX shared module ../../../../bin/_tboxw.so
[ 94%] Building CXX object flow/src/CMakeFiles/flow.dir/wWakeResidual.cpp.o
[ 94%] Built target _tboxw
Scanning dependencies of target _wavesw
[ 95%] Building CXX object waves/_src/CMakeFiles/_wavesw.dir/__/__/bin/waveswPYTHON_wrap.cxx.o
[ 96%] Linking CXX executable ../../bin/waves1
[ 97%] Linking CXX shared module ../../bin/_heatw.so
[ 97%] Built target waves1
[ 97%] Built target _heatw
[ 98%] Linking CXX shared library ../../bin/libflow.so
[ 98%] Built target flow
Scanning dependencies of target _floww
[ 98%] Building CXX object flow/_src/CMakeFiles/_floww.dir/__/__/bin/flowwPYTHON_wrap.cxx.o
[ 99%] Linking CXX shared module ../../bin/_wavesw.so
[ 99%] Built target _wavesw
[100%] Linking CXX shared module ../../bin/_floww.so
[100%] Built target _floww
section_end:1648793860:step_script
[0Ksection_start:1648793860:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1648793861:cleanup_file_variables
[0K[32;1mJob succeeded[0;m