From a52a375db87afb529677dbfb2411ce04b40e9651 Mon Sep 17 00:00:00 2001
From: Kim Liegeois <kliegeois@MacBook-Pro-de-Kim.local>
Date: Mon, 5 Sep 2016 16:29:53 +0200
Subject: [PATCH] tlnos mac
---
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diff --git a/CMake/FindMUMPS.cmake b/CMake/FindMUMPS.cmake
index f2052579..82d43c6a 100644
--- a/CMake/FindMUMPS.cmake
+++ b/CMake/FindMUMPS.cmake
@@ -19,6 +19,7 @@ if(MSVC)
libifportmd libmmd libirc svml_dispmd) # mumps/seq (static)
else()
SET(_MUMPS_LIBSET_SO dmumps_seq
+ dmumps_pord_seq
dmumps_pord_seq_mkl
dmumps_pord_seq_openblas) # mumps/seq (dynamic)
SET(_MUMPS_LIBSET_A dmumps mumps_common pord mpiseq) # mumps/seq (static)
diff --git a/CMake/FindTBB.cmake b/CMake/FindTBB.cmake
index e08c76fe..efe7895c 100644
--- a/CMake/FindTBB.cmake
+++ b/CMake/FindTBB.cmake
@@ -40,9 +40,9 @@
# http://www.cmake.org/Wiki/CMake:How_To_Find_Libraries#Writing_find_modules
# ----------------------------------------------------------------------------
-set (_VERB 0) # set to 1 for debugging
+set (_VERB 1) # set to 1 for debugging
-OPTION(ENABLE_TBBMALLOC "Use TBBMALLOC" ON)
+OPTION(ENABLE_TBBMALLOC "Use TBBMALLOC" OFF)
IF(_VERB) # Debug
MESSAGE(STATUS "-------------------------------------")
diff --git a/CMake/OSX.cmake b/CMake/OSX.cmake
new file mode 100644
index 00000000..169c3d74
--- /dev/null
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@@ -0,0 +1,2 @@
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+set(CMAKE_COMPILER_IS_MINGW )
+set(CMAKE_COMPILER_IS_CYGWIN )
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+ because some compilers will just produce instructions to fill the
+ array rather than assigning a pointer to a static array. */
+char const* info_compiler = "INFO" ":" "compiler[" COMPILER_ID "]";
+#ifdef SIMULATE_ID
+char const* info_simulate = "INFO" ":" "simulate[" SIMULATE_ID "]";
+#endif
+
+#ifdef __QNXNTO__
+char const* qnxnto = "INFO" ":" "qnxnto[]";
+#endif
+
+#if defined(__CRAYXE) || defined(__CRAYXC)
+char const *info_cray = "INFO" ":" "compiler_wrapper[CrayPrgEnv]";
+#endif
+
+#define STRINGIFY_HELPER(X) #X
+#define STRINGIFY(X) STRINGIFY_HELPER(X)
+
+/* Identify known platforms by name. */
+#if defined(__linux) || defined(__linux__) || defined(linux)
+# define PLATFORM_ID "Linux"
+
+#elif defined(__CYGWIN__)
+# define PLATFORM_ID "Cygwin"
+
+#elif defined(__MINGW32__)
+# define PLATFORM_ID "MinGW"
+
+#elif defined(__APPLE__)
+# define PLATFORM_ID "Darwin"
+
+#elif defined(_WIN32) || defined(__WIN32__) || defined(WIN32)
+# define PLATFORM_ID "Windows"
+
+#elif defined(__FreeBSD__) || defined(__FreeBSD)
+# define PLATFORM_ID "FreeBSD"
+
+#elif defined(__NetBSD__) || defined(__NetBSD)
+# define PLATFORM_ID "NetBSD"
+
+#elif defined(__OpenBSD__) || defined(__OPENBSD)
+# define PLATFORM_ID "OpenBSD"
+
+#elif defined(__sun) || defined(sun)
+# define PLATFORM_ID "SunOS"
+
+#elif defined(_AIX) || defined(__AIX) || defined(__AIX__) || defined(__aix) || defined(__aix__)
+# define PLATFORM_ID "AIX"
+
+#elif defined(__sgi) || defined(__sgi__) || defined(_SGI)
+# define PLATFORM_ID "IRIX"
+
+#elif defined(__hpux) || defined(__hpux__)
+# define PLATFORM_ID "HP-UX"
+
+#elif defined(__HAIKU__)
+# define PLATFORM_ID "Haiku"
+
+#elif defined(__BeOS) || defined(__BEOS__) || defined(_BEOS)
+# define PLATFORM_ID "BeOS"
+
+#elif defined(__QNX__) || defined(__QNXNTO__)
+# define PLATFORM_ID "QNX"
+
+#elif defined(__tru64) || defined(_tru64) || defined(__TRU64__)
+# define PLATFORM_ID "Tru64"
+
+#elif defined(__riscos) || defined(__riscos__)
+# define PLATFORM_ID "RISCos"
+
+#elif defined(__sinix) || defined(__sinix__) || defined(__SINIX__)
+# define PLATFORM_ID "SINIX"
+
+#elif defined(__UNIX_SV__)
+# define PLATFORM_ID "UNIX_SV"
+
+#elif defined(__bsdos__)
+# define PLATFORM_ID "BSDOS"
+
+#elif defined(_MPRAS) || defined(MPRAS)
+# define PLATFORM_ID "MP-RAS"
+
+#elif defined(__osf) || defined(__osf__)
+# define PLATFORM_ID "OSF1"
+
+#elif defined(_SCO_SV) || defined(SCO_SV) || defined(sco_sv)
+# define PLATFORM_ID "SCO_SV"
+
+#elif defined(__ultrix) || defined(__ultrix__) || defined(_ULTRIX)
+# define PLATFORM_ID "ULTRIX"
+
+#elif defined(__XENIX__) || defined(_XENIX) || defined(XENIX)
+# define PLATFORM_ID "Xenix"
+
+#elif defined(__WATCOMC__)
+# if defined(__LINUX__)
+# define PLATFORM_ID "Linux"
+
+# elif defined(__DOS__)
+# define PLATFORM_ID "DOS"
+
+# elif defined(__OS2__)
+# define PLATFORM_ID "OS2"
+
+# elif defined(__WINDOWS__)
+# define PLATFORM_ID "Windows3x"
+
+# else /* unknown platform */
+# define PLATFORM_ID
+# endif
+
+#else /* unknown platform */
+# define PLATFORM_ID
+
+#endif
+
+/* For windows compilers MSVC and Intel we can determine
+ the architecture of the compiler being used. This is because
+ the compilers do not have flags that can change the architecture,
+ but rather depend on which compiler is being used
+*/
+#if defined(_WIN32) && defined(_MSC_VER)
+# if defined(_M_IA64)
+# define ARCHITECTURE_ID "IA64"
+
+# elif defined(_M_X64) || defined(_M_AMD64)
+# define ARCHITECTURE_ID "x64"
+
+# elif defined(_M_IX86)
+# define ARCHITECTURE_ID "X86"
+
+# elif defined(_M_ARM)
+# if _M_ARM == 4
+# define ARCHITECTURE_ID "ARMV4I"
+# elif _M_ARM == 5
+# define ARCHITECTURE_ID "ARMV5I"
+# else
+# define ARCHITECTURE_ID "ARMV" STRINGIFY(_M_ARM)
+# endif
+
+# elif defined(_M_MIPS)
+# define ARCHITECTURE_ID "MIPS"
+
+# elif defined(_M_SH)
+# define ARCHITECTURE_ID "SHx"
+
+# else /* unknown architecture */
+# define ARCHITECTURE_ID ""
+# endif
+
+#elif defined(__WATCOMC__)
+# if defined(_M_I86)
+# define ARCHITECTURE_ID "I86"
+
+# elif defined(_M_IX86)
+# define ARCHITECTURE_ID "X86"
+
+# else /* unknown architecture */
+# define ARCHITECTURE_ID ""
+# endif
+
+#else
+# define ARCHITECTURE_ID
+#endif
+
+/* Convert integer to decimal digit literals. */
+#define DEC(n) \
+ ('0' + (((n) / 10000000)%10)), \
+ ('0' + (((n) / 1000000)%10)), \
+ ('0' + (((n) / 100000)%10)), \
+ ('0' + (((n) / 10000)%10)), \
+ ('0' + (((n) / 1000)%10)), \
+ ('0' + (((n) / 100)%10)), \
+ ('0' + (((n) / 10)%10)), \
+ ('0' + ((n) % 10))
+
+/* Convert integer to hex digit literals. */
+#define HEX(n) \
+ ('0' + ((n)>>28 & 0xF)), \
+ ('0' + ((n)>>24 & 0xF)), \
+ ('0' + ((n)>>20 & 0xF)), \
+ ('0' + ((n)>>16 & 0xF)), \
+ ('0' + ((n)>>12 & 0xF)), \
+ ('0' + ((n)>>8 & 0xF)), \
+ ('0' + ((n)>>4 & 0xF)), \
+ ('0' + ((n) & 0xF))
+
+/* Construct a string literal encoding the version number components. */
+#ifdef COMPILER_VERSION_MAJOR
+char const info_version[] = {
+ 'I', 'N', 'F', 'O', ':',
+ 'c','o','m','p','i','l','e','r','_','v','e','r','s','i','o','n','[',
+ COMPILER_VERSION_MAJOR,
+# ifdef COMPILER_VERSION_MINOR
+ '.', COMPILER_VERSION_MINOR,
+# ifdef COMPILER_VERSION_PATCH
+ '.', COMPILER_VERSION_PATCH,
+# ifdef COMPILER_VERSION_TWEAK
+ '.', COMPILER_VERSION_TWEAK,
+# endif
+# endif
+# endif
+ ']','\0'};
+#endif
+
+/* Construct a string literal encoding the version number components. */
+#ifdef SIMULATE_VERSION_MAJOR
+char const info_simulate_version[] = {
+ 'I', 'N', 'F', 'O', ':',
+ 's','i','m','u','l','a','t','e','_','v','e','r','s','i','o','n','[',
+ SIMULATE_VERSION_MAJOR,
+# ifdef SIMULATE_VERSION_MINOR
+ '.', SIMULATE_VERSION_MINOR,
+# ifdef SIMULATE_VERSION_PATCH
+ '.', SIMULATE_VERSION_PATCH,
+# ifdef SIMULATE_VERSION_TWEAK
+ '.', SIMULATE_VERSION_TWEAK,
+# endif
+# endif
+# endif
+ ']','\0'};
+#endif
+
+/* Construct the string literal in pieces to prevent the source from
+ getting matched. Store it in a pointer rather than an array
+ because some compilers will just produce instructions to fill the
+ array rather than assigning a pointer to a static array. */
+char const* info_platform = "INFO" ":" "platform[" PLATFORM_ID "]";
+char const* info_arch = "INFO" ":" "arch[" ARCHITECTURE_ID "]";
+
+
+
+
+#if !defined(__STDC__)
+# if defined(_MSC_VER) && !defined(__clang__)
+# define C_DIALECT "90"
+# else
+# define C_DIALECT
+# endif
+#elif __STDC_VERSION__ >= 201000L
+# define C_DIALECT "11"
+#elif __STDC_VERSION__ >= 199901L
+# define C_DIALECT "99"
+#else
+# define C_DIALECT "90"
+#endif
+const char* info_language_dialect_default =
+ "INFO" ":" "dialect_default[" C_DIALECT "]";
+
+/*--------------------------------------------------------------------------*/
+
+#ifdef ID_VOID_MAIN
+void main() {}
+#else
+# if defined(__CLASSIC_C__)
+int main(argc, argv) int argc; char *argv[];
+# else
+int main(int argc, char* argv[])
+# endif
+{
+ int require = 0;
+ require += info_compiler[argc];
+ require += info_platform[argc];
+ require += info_arch[argc];
+#ifdef COMPILER_VERSION_MAJOR
+ require += info_version[argc];
+#endif
+#ifdef SIMULATE_ID
+ require += info_simulate[argc];
+#endif
+#ifdef SIMULATE_VERSION_MAJOR
+ require += info_simulate_version[argc];
+#endif
+#if defined(__CRAYXE) || defined(__CRAYXC)
+ require += info_cray[argc];
+#endif
+ require += info_language_dialect_default[argc];
+ (void)argv;
+ return require;
+}
+#endif
diff --git a/CMakeFiles/3.6.1/CompilerIdCXX/CMakeCXXCompilerId.cpp b/CMakeFiles/3.6.1/CompilerIdCXX/CMakeCXXCompilerId.cpp
new file mode 100644
index 00000000..a6e6bede
--- /dev/null
+++ b/CMakeFiles/3.6.1/CompilerIdCXX/CMakeCXXCompilerId.cpp
@@ -0,0 +1,533 @@
+/* This source file must have a .cpp extension so that all C++ compilers
+ recognize the extension without flags. Borland does not know .cxx for
+ example. */
+#ifndef __cplusplus
+# error "A C compiler has been selected for C++."
+#endif
+
+
+/* Version number components: V=Version, R=Revision, P=Patch
+ Version date components: YYYY=Year, MM=Month, DD=Day */
+
+#if defined(__COMO__)
+# define COMPILER_ID "Comeau"
+ /* __COMO_VERSION__ = VRR */
+# define COMPILER_VERSION_MAJOR DEC(__COMO_VERSION__ / 100)
+# define COMPILER_VERSION_MINOR DEC(__COMO_VERSION__ % 100)
+
+#elif defined(__INTEL_COMPILER) || defined(__ICC)
+# define COMPILER_ID "Intel"
+# if defined(_MSC_VER)
+# define SIMULATE_ID "MSVC"
+# endif
+ /* __INTEL_COMPILER = VRP */
+# define COMPILER_VERSION_MAJOR DEC(__INTEL_COMPILER/100)
+# define COMPILER_VERSION_MINOR DEC(__INTEL_COMPILER/10 % 10)
+# if defined(__INTEL_COMPILER_UPDATE)
+# define COMPILER_VERSION_PATCH DEC(__INTEL_COMPILER_UPDATE)
+# else
+# define COMPILER_VERSION_PATCH DEC(__INTEL_COMPILER % 10)
+# endif
+# if defined(__INTEL_COMPILER_BUILD_DATE)
+ /* __INTEL_COMPILER_BUILD_DATE = YYYYMMDD */
+# define COMPILER_VERSION_TWEAK DEC(__INTEL_COMPILER_BUILD_DATE)
+# endif
+# if defined(_MSC_VER)
+ /* _MSC_VER = VVRR */
+# define SIMULATE_VERSION_MAJOR DEC(_MSC_VER / 100)
+# define SIMULATE_VERSION_MINOR DEC(_MSC_VER % 100)
+# endif
+
+#elif defined(__PATHCC__)
+# define COMPILER_ID "PathScale"
+# define COMPILER_VERSION_MAJOR DEC(__PATHCC__)
+# define COMPILER_VERSION_MINOR DEC(__PATHCC_MINOR__)
+# if defined(__PATHCC_PATCHLEVEL__)
+# define COMPILER_VERSION_PATCH DEC(__PATHCC_PATCHLEVEL__)
+# endif
+
+#elif defined(__BORLANDC__) && defined(__CODEGEARC_VERSION__)
+# define COMPILER_ID "Embarcadero"
+# define COMPILER_VERSION_MAJOR HEX(__CODEGEARC_VERSION__>>24 & 0x00FF)
+# define COMPILER_VERSION_MINOR HEX(__CODEGEARC_VERSION__>>16 & 0x00FF)
+# define COMPILER_VERSION_PATCH DEC(__CODEGEARC_VERSION__ & 0xFFFF)
+
+#elif defined(__BORLANDC__)
+# define COMPILER_ID "Borland"
+ /* __BORLANDC__ = 0xVRR */
+# define COMPILER_VERSION_MAJOR HEX(__BORLANDC__>>8)
+# define COMPILER_VERSION_MINOR HEX(__BORLANDC__ & 0xFF)
+
+#elif defined(__WATCOMC__) && __WATCOMC__ < 1200
+# define COMPILER_ID "Watcom"
+ /* __WATCOMC__ = VVRR */
+# define COMPILER_VERSION_MAJOR DEC(__WATCOMC__ / 100)
+# define COMPILER_VERSION_MINOR DEC((__WATCOMC__ / 10) % 10)
+# if (__WATCOMC__ % 10) > 0
+# define COMPILER_VERSION_PATCH DEC(__WATCOMC__ % 10)
+# endif
+
+#elif defined(__WATCOMC__)
+# define COMPILER_ID "OpenWatcom"
+ /* __WATCOMC__ = VVRP + 1100 */
+# define COMPILER_VERSION_MAJOR DEC((__WATCOMC__ - 1100) / 100)
+# define COMPILER_VERSION_MINOR DEC((__WATCOMC__ / 10) % 10)
+# if (__WATCOMC__ % 10) > 0
+# define COMPILER_VERSION_PATCH DEC(__WATCOMC__ % 10)
+# endif
+
+#elif defined(__SUNPRO_CC)
+# define COMPILER_ID "SunPro"
+# if __SUNPRO_CC >= 0x5100
+ /* __SUNPRO_CC = 0xVRRP */
+# define COMPILER_VERSION_MAJOR HEX(__SUNPRO_CC>>12)
+# define COMPILER_VERSION_MINOR HEX(__SUNPRO_CC>>4 & 0xFF)
+# define COMPILER_VERSION_PATCH HEX(__SUNPRO_CC & 0xF)
+# else
+ /* __SUNPRO_CC = 0xVRP */
+# define COMPILER_VERSION_MAJOR HEX(__SUNPRO_CC>>8)
+# define COMPILER_VERSION_MINOR HEX(__SUNPRO_CC>>4 & 0xF)
+# define COMPILER_VERSION_PATCH HEX(__SUNPRO_CC & 0xF)
+# endif
+
+#elif defined(__HP_aCC)
+# define COMPILER_ID "HP"
+ /* __HP_aCC = VVRRPP */
+# define COMPILER_VERSION_MAJOR DEC(__HP_aCC/10000)
+# define COMPILER_VERSION_MINOR DEC(__HP_aCC/100 % 100)
+# define COMPILER_VERSION_PATCH DEC(__HP_aCC % 100)
+
+#elif defined(__DECCXX)
+# define COMPILER_ID "Compaq"
+ /* __DECCXX_VER = VVRRTPPPP */
+# define COMPILER_VERSION_MAJOR DEC(__DECCXX_VER/10000000)
+# define COMPILER_VERSION_MINOR DEC(__DECCXX_VER/100000 % 100)
+# define COMPILER_VERSION_PATCH DEC(__DECCXX_VER % 10000)
+
+#elif defined(__IBMCPP__) && defined(__COMPILER_VER__)
+# define COMPILER_ID "zOS"
+ /* __IBMCPP__ = VRP */
+# define COMPILER_VERSION_MAJOR DEC(__IBMCPP__/100)
+# define COMPILER_VERSION_MINOR DEC(__IBMCPP__/10 % 10)
+# define COMPILER_VERSION_PATCH DEC(__IBMCPP__ % 10)
+
+#elif defined(__IBMCPP__) && !defined(__COMPILER_VER__) && __IBMCPP__ >= 800
+# define COMPILER_ID "XL"
+ /* __IBMCPP__ = VRP */
+# define COMPILER_VERSION_MAJOR DEC(__IBMCPP__/100)
+# define COMPILER_VERSION_MINOR DEC(__IBMCPP__/10 % 10)
+# define COMPILER_VERSION_PATCH DEC(__IBMCPP__ % 10)
+
+#elif defined(__IBMCPP__) && !defined(__COMPILER_VER__) && __IBMCPP__ < 800
+# define COMPILER_ID "VisualAge"
+ /* __IBMCPP__ = VRP */
+# define COMPILER_VERSION_MAJOR DEC(__IBMCPP__/100)
+# define COMPILER_VERSION_MINOR DEC(__IBMCPP__/10 % 10)
+# define COMPILER_VERSION_PATCH DEC(__IBMCPP__ % 10)
+
+#elif defined(__PGI)
+# define COMPILER_ID "PGI"
+# define COMPILER_VERSION_MAJOR DEC(__PGIC__)
+# define COMPILER_VERSION_MINOR DEC(__PGIC_MINOR__)
+# if defined(__PGIC_PATCHLEVEL__)
+# define COMPILER_VERSION_PATCH DEC(__PGIC_PATCHLEVEL__)
+# endif
+
+#elif defined(_CRAYC)
+# define COMPILER_ID "Cray"
+# define COMPILER_VERSION_MAJOR DEC(_RELEASE_MAJOR)
+# define COMPILER_VERSION_MINOR DEC(_RELEASE_MINOR)
+
+#elif defined(__TI_COMPILER_VERSION__)
+# define COMPILER_ID "TI"
+ /* __TI_COMPILER_VERSION__ = VVVRRRPPP */
+# define COMPILER_VERSION_MAJOR DEC(__TI_COMPILER_VERSION__/1000000)
+# define COMPILER_VERSION_MINOR DEC(__TI_COMPILER_VERSION__/1000 % 1000)
+# define COMPILER_VERSION_PATCH DEC(__TI_COMPILER_VERSION__ % 1000)
+
+#elif defined(__FUJITSU) || defined(__FCC_VERSION) || defined(__fcc_version)
+# define COMPILER_ID "Fujitsu"
+
+#elif defined(__SCO_VERSION__)
+# define COMPILER_ID "SCO"
+
+#elif defined(__clang__) && defined(__apple_build_version__)
+# define COMPILER_ID "AppleClang"
+# if defined(_MSC_VER)
+# define SIMULATE_ID "MSVC"
+# endif
+# define COMPILER_VERSION_MAJOR DEC(__clang_major__)
+# define COMPILER_VERSION_MINOR DEC(__clang_minor__)
+# define COMPILER_VERSION_PATCH DEC(__clang_patchlevel__)
+# if defined(_MSC_VER)
+ /* _MSC_VER = VVRR */
+# define SIMULATE_VERSION_MAJOR DEC(_MSC_VER / 100)
+# define SIMULATE_VERSION_MINOR DEC(_MSC_VER % 100)
+# endif
+# define COMPILER_VERSION_TWEAK DEC(__apple_build_version__)
+
+#elif defined(__clang__)
+# define COMPILER_ID "Clang"
+# if defined(_MSC_VER)
+# define SIMULATE_ID "MSVC"
+# endif
+# define COMPILER_VERSION_MAJOR DEC(__clang_major__)
+# define COMPILER_VERSION_MINOR DEC(__clang_minor__)
+# define COMPILER_VERSION_PATCH DEC(__clang_patchlevel__)
+# if defined(_MSC_VER)
+ /* _MSC_VER = VVRR */
+# define SIMULATE_VERSION_MAJOR DEC(_MSC_VER / 100)
+# define SIMULATE_VERSION_MINOR DEC(_MSC_VER % 100)
+# endif
+
+#elif defined(__GNUC__)
+# define COMPILER_ID "GNU"
+# define COMPILER_VERSION_MAJOR DEC(__GNUC__)
+# if defined(__GNUC_MINOR__)
+# define COMPILER_VERSION_MINOR DEC(__GNUC_MINOR__)
+# endif
+# if defined(__GNUC_PATCHLEVEL__)
+# define COMPILER_VERSION_PATCH DEC(__GNUC_PATCHLEVEL__)
+# endif
+
+#elif defined(_MSC_VER)
+# define COMPILER_ID "MSVC"
+ /* _MSC_VER = VVRR */
+# define COMPILER_VERSION_MAJOR DEC(_MSC_VER / 100)
+# define COMPILER_VERSION_MINOR DEC(_MSC_VER % 100)
+# if defined(_MSC_FULL_VER)
+# if _MSC_VER >= 1400
+ /* _MSC_FULL_VER = VVRRPPPPP */
+# define COMPILER_VERSION_PATCH DEC(_MSC_FULL_VER % 100000)
+# else
+ /* _MSC_FULL_VER = VVRRPPPP */
+# define COMPILER_VERSION_PATCH DEC(_MSC_FULL_VER % 10000)
+# endif
+# endif
+# if defined(_MSC_BUILD)
+# define COMPILER_VERSION_TWEAK DEC(_MSC_BUILD)
+# endif
+
+#elif defined(__VISUALDSPVERSION__) || defined(__ADSPBLACKFIN__) || defined(__ADSPTS__) || defined(__ADSP21000__)
+# define COMPILER_ID "ADSP"
+#if defined(__VISUALDSPVERSION__)
+ /* __VISUALDSPVERSION__ = 0xVVRRPP00 */
+# define COMPILER_VERSION_MAJOR HEX(__VISUALDSPVERSION__>>24)
+# define COMPILER_VERSION_MINOR HEX(__VISUALDSPVERSION__>>16 & 0xFF)
+# define COMPILER_VERSION_PATCH HEX(__VISUALDSPVERSION__>>8 & 0xFF)
+#endif
+
+#elif defined(__IAR_SYSTEMS_ICC__ ) || defined(__IAR_SYSTEMS_ICC)
+# define COMPILER_ID "IAR"
+
+#elif defined(__ARMCC_VERSION)
+# define COMPILER_ID "ARMCC"
+#if __ARMCC_VERSION >= 1000000
+ /* __ARMCC_VERSION = VRRPPPP */
+ # define COMPILER_VERSION_MAJOR DEC(__ARMCC_VERSION/1000000)
+ # define COMPILER_VERSION_MINOR DEC(__ARMCC_VERSION/10000 % 100)
+ # define COMPILER_VERSION_PATCH DEC(__ARMCC_VERSION % 10000)
+#else
+ /* __ARMCC_VERSION = VRPPPP */
+ # define COMPILER_VERSION_MAJOR DEC(__ARMCC_VERSION/100000)
+ # define COMPILER_VERSION_MINOR DEC(__ARMCC_VERSION/10000 % 10)
+ # define COMPILER_VERSION_PATCH DEC(__ARMCC_VERSION % 10000)
+#endif
+
+
+#elif defined(_SGI_COMPILER_VERSION) || defined(_COMPILER_VERSION)
+# define COMPILER_ID "MIPSpro"
+# if defined(_SGI_COMPILER_VERSION)
+ /* _SGI_COMPILER_VERSION = VRP */
+# define COMPILER_VERSION_MAJOR DEC(_SGI_COMPILER_VERSION/100)
+# define COMPILER_VERSION_MINOR DEC(_SGI_COMPILER_VERSION/10 % 10)
+# define COMPILER_VERSION_PATCH DEC(_SGI_COMPILER_VERSION % 10)
+# else
+ /* _COMPILER_VERSION = VRP */
+# define COMPILER_VERSION_MAJOR DEC(_COMPILER_VERSION/100)
+# define COMPILER_VERSION_MINOR DEC(_COMPILER_VERSION/10 % 10)
+# define COMPILER_VERSION_PATCH DEC(_COMPILER_VERSION % 10)
+# endif
+
+
+/* These compilers are either not known or too old to define an
+ identification macro. Try to identify the platform and guess that
+ it is the native compiler. */
+#elif defined(__sgi)
+# define COMPILER_ID "MIPSpro"
+
+#elif defined(__hpux) || defined(__hpua)
+# define COMPILER_ID "HP"
+
+#else /* unknown compiler */
+# define COMPILER_ID ""
+#endif
+
+/* Construct the string literal in pieces to prevent the source from
+ getting matched. Store it in a pointer rather than an array
+ because some compilers will just produce instructions to fill the
+ array rather than assigning a pointer to a static array. */
+char const* info_compiler = "INFO" ":" "compiler[" COMPILER_ID "]";
+#ifdef SIMULATE_ID
+char const* info_simulate = "INFO" ":" "simulate[" SIMULATE_ID "]";
+#endif
+
+#ifdef __QNXNTO__
+char const* qnxnto = "INFO" ":" "qnxnto[]";
+#endif
+
+#if defined(__CRAYXE) || defined(__CRAYXC)
+char const *info_cray = "INFO" ":" "compiler_wrapper[CrayPrgEnv]";
+#endif
+
+#define STRINGIFY_HELPER(X) #X
+#define STRINGIFY(X) STRINGIFY_HELPER(X)
+
+/* Identify known platforms by name. */
+#if defined(__linux) || defined(__linux__) || defined(linux)
+# define PLATFORM_ID "Linux"
+
+#elif defined(__CYGWIN__)
+# define PLATFORM_ID "Cygwin"
+
+#elif defined(__MINGW32__)
+# define PLATFORM_ID "MinGW"
+
+#elif defined(__APPLE__)
+# define PLATFORM_ID "Darwin"
+
+#elif defined(_WIN32) || defined(__WIN32__) || defined(WIN32)
+# define PLATFORM_ID "Windows"
+
+#elif defined(__FreeBSD__) || defined(__FreeBSD)
+# define PLATFORM_ID "FreeBSD"
+
+#elif defined(__NetBSD__) || defined(__NetBSD)
+# define PLATFORM_ID "NetBSD"
+
+#elif defined(__OpenBSD__) || defined(__OPENBSD)
+# define PLATFORM_ID "OpenBSD"
+
+#elif defined(__sun) || defined(sun)
+# define PLATFORM_ID "SunOS"
+
+#elif defined(_AIX) || defined(__AIX) || defined(__AIX__) || defined(__aix) || defined(__aix__)
+# define PLATFORM_ID "AIX"
+
+#elif defined(__sgi) || defined(__sgi__) || defined(_SGI)
+# define PLATFORM_ID "IRIX"
+
+#elif defined(__hpux) || defined(__hpux__)
+# define PLATFORM_ID "HP-UX"
+
+#elif defined(__HAIKU__)
+# define PLATFORM_ID "Haiku"
+
+#elif defined(__BeOS) || defined(__BEOS__) || defined(_BEOS)
+# define PLATFORM_ID "BeOS"
+
+#elif defined(__QNX__) || defined(__QNXNTO__)
+# define PLATFORM_ID "QNX"
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+CMAKE_PROGRESS_2 = 51
+CMAKE_PROGRESS_3 = 52
+CMAKE_PROGRESS_4 = 53
+CMAKE_PROGRESS_5 = 54
+CMAKE_PROGRESS_6 = 55
+CMAKE_PROGRESS_7 = 56
+CMAKE_PROGRESS_8 = 57
+CMAKE_PROGRESS_9 = 58
+CMAKE_PROGRESS_10 = 59
+CMAKE_PROGRESS_11 = 60
+CMAKE_PROGRESS_12 = 61
+CMAKE_PROGRESS_13 = 62
+CMAKE_PROGRESS_14 = 63
+CMAKE_PROGRESS_15 = 64
+CMAKE_PROGRESS_16 = 65
+CMAKE_PROGRESS_17 = 66
+CMAKE_PROGRESS_18 = 67
+CMAKE_PROGRESS_19 = 68
+CMAKE_PROGRESS_20 = 69
+CMAKE_PROGRESS_21 = 70
+CMAKE_PROGRESS_22 = 71
+CMAKE_PROGRESS_23 = 72
+CMAKE_PROGRESS_24 = 73
+CMAKE_PROGRESS_25 = 74
+CMAKE_PROGRESS_26 = 75
+CMAKE_PROGRESS_27 = 76
+CMAKE_PROGRESS_28 = 77
+CMAKE_PROGRESS_29 = 78
+CMAKE_PROGRESS_30 = 79
+CMAKE_PROGRESS_31 = 80
+CMAKE_PROGRESS_32 = 81
+CMAKE_PROGRESS_33 = 82
+CMAKE_PROGRESS_34 = 83
+CMAKE_PROGRESS_35 = 84
+CMAKE_PROGRESS_36 = 85
+CMAKE_PROGRESS_37 = 86
+
diff --git a/tlnos/src/wExample10.cpp b/tlnos/src/wExample10.cpp
index 709d88bb..2f366acd 100644
--- a/tlnos/src/wExample10.cpp
+++ b/tlnos/src/wExample10.cpp
@@ -1,74 +1,10 @@
#include "wExample10.h"
-// @HEADER
-// ************************************************************************
-//
-// Rapid Optimization Library (ROL) Package
-// Copyright (2014) Sandia Corporation
-//
-// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
-// license for use of this work by or on behalf of the U.S. Government.
-//
-// Redistribution and use in source and binary forms, with or without
-// modification, are permitted provided that the following conditions are
-// met:
-//
-// 1. Redistributions of source code must retain the above copyright
-// notice, this list of conditions and the following disclaimer.
-//
-// 2. Redistributions in binary form must reproduce the above copyright
-// notice, this list of conditions and the following disclaimer in the
-// documentation and/or other materials provided with the distribution.
-//
-// 3. Neither the name of the Corporation nor the names of the
-// contributors may be used to endorse or promote products derived from
-// this software without specific prior written permission.
-//
-// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
-// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
-// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
-// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
-// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
-// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
-// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
-// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
-// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
-// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-//
-// Questions? Contact lead developers:
-// Drew Kouri (dpkouri@sandia.gov) and
-// Denis Ridzal (dridzal@sandia.gov)
-//
-// ************************************************************************
-// @HEADER
-/*! \file example_01.cpp
- \brief Shows how to solve the mother problem of PDE-constrained optimization:
-*/
+#include "Epetra_SerialDenseVector.h"
+#include "Epetra_SerialDenseMatrix.h"
-#include "Teuchos_Comm.hpp"
-#include "Teuchos_oblackholestream.hpp"
-#include "Teuchos_GlobalMPISession.hpp"
-#include "Teuchos_XMLParameterListHelpers.hpp"
-
-#include "Tpetra_DefaultPlatform.hpp"
-#include "Tpetra_Version.hpp"
-
-#include "ROL_Algorithm.hpp"
-#include "ROL_TrustRegionStep.hpp"
-#include "ROL_CompositeStep.hpp"
-#include "ROL_Reduced_Objective_SimOpt.hpp"
-#include "ROL_TpetraMultiVector.hpp"
-
-#include <iostream>
-#include <algorithm>
-
-#include "data.hpp"
-#include "objective.hpp"
-#include "constraint.hpp"
-
-typedef double RealT;
+#include "Tpetra_Vector.hpp"
using namespace tlnos;
@@ -78,115 +14,28 @@ Example10::Example10()
int
-Example10::execute()
+Example10::execute()
{
-
- static int argc = 1;
- char **argv = new char*[2];// mem leak volontaire
- argv[0] = new char[8]; strcpy(argv[0], "myprog"); // mem leak volontaire
- argv[1] = new char[1]; strcpy(argv[1], ""); // mem leak volontaire
-
-
- // This little trick lets us print to std::cout only if a (dummy) command-line argument is provided.
- int iprint = argc - 1;
- Teuchos::RCP<std::ostream> outStream;
- Teuchos::oblackholestream bhs; // outputs nothing
-
- /*** Initialize communicator. ***/
- Teuchos::GlobalMPISession mpiSession (&argc, &argv, &bhs);
- Teuchos::RCP<const Teuchos::Comm<int> > comm = Tpetra::DefaultPlatform::getDefaultPlatform().getComm();
- const int myRank = comm->getRank();
- if ((iprint > 0) && (myRank == 0)) {
- outStream = Teuchos::rcp(&std::cout, false);
- }
- else {
- outStream = Teuchos::rcp(&bhs, false);
- }
-
- int errorFlag = 0;
-
- // *** Example body.
- try {
-
- /*** Read in XML input ***/
- std::string filename = "input.xml";
- Teuchos::RCP<Teuchos::ParameterList> parlist = Teuchos::rcp( new Teuchos::ParameterList() );
- Teuchos::updateParametersFromXmlFile( filename, parlist.ptr() );
-
- /*** Initialize main data structure. ***/
- Teuchos::RCP<PoissonData<RealT> > data = Teuchos::rcp(new PoissonData<RealT>(comm, parlist, outStream));
-
- /*** Build vectors and dress them up as ROL vectors. ***/
- Teuchos::RCP<const Tpetra::Map<> > vecmap_u = data->getMatA()->getDomainMap();
- Teuchos::RCP<const Tpetra::Map<> > vecmap_z = data->getMatB()->getDomainMap();
- Teuchos::RCP<const Tpetra::Map<> > vecmap_c = data->getMatA()->getRangeMap();
- Teuchos::RCP<Tpetra::MultiVector<> > u_rcp = Teuchos::rcp(new Tpetra::MultiVector<>(vecmap_u, 1, true));
- Teuchos::RCP<Tpetra::MultiVector<> > z_rcp = Teuchos::rcp(new Tpetra::MultiVector<>(vecmap_z, 1, true));
- Teuchos::RCP<Tpetra::MultiVector<> > c_rcp = Teuchos::rcp(new Tpetra::MultiVector<>(vecmap_c, 1, true));
- Teuchos::RCP<Tpetra::MultiVector<> > du_rcp = Teuchos::rcp(new Tpetra::MultiVector<>(vecmap_u, 1, true));
- Teuchos::RCP<Tpetra::MultiVector<> > dz_rcp = Teuchos::rcp(new Tpetra::MultiVector<>(vecmap_z, 1, true));
- // Set all values to 1 in u, z and c.
- u_rcp->putScalar(1.0);
- z_rcp->putScalar(1.0);
- c_rcp->putScalar(1.0);
- // Randomize d vectors.
- du_rcp->randomize();
- dz_rcp->randomize();
- // Create ROL::TpetraMultiVectors.
- Teuchos::RCP<ROL::Vector<RealT> > up = Teuchos::rcp(new ROL::TpetraMultiVector<RealT>(u_rcp));
- Teuchos::RCP<ROL::Vector<RealT> > zp = Teuchos::rcp(new ROL::TpetraMultiVector<RealT>(z_rcp));
- Teuchos::RCP<ROL::Vector<RealT> > cp = Teuchos::rcp(new ROL::TpetraMultiVector<RealT>(c_rcp));
- Teuchos::RCP<ROL::Vector<RealT> > dup = Teuchos::rcp(new ROL::TpetraMultiVector<RealT>(du_rcp));
- Teuchos::RCP<ROL::Vector<RealT> > dzp = Teuchos::rcp(new ROL::TpetraMultiVector<RealT>(dz_rcp));
- // Create ROL SimOpt vectors.
- ROL::Vector_SimOpt<RealT> x(up,zp);
- ROL::Vector_SimOpt<RealT> d(dup,dzp);
-
- /*** Build objective function, constraint and reduced objective function. ***/
- Teuchos::RCP<Objective_PDEOPT_Poisson<RealT> > obj =
- Teuchos::rcp(new Objective_PDEOPT_Poisson<RealT>(data, parlist));
- Teuchos::RCP<EqualityConstraint_PDEOPT_Poisson<RealT> > con =
- Teuchos::rcp(new EqualityConstraint_PDEOPT_Poisson<RealT>(data, parlist));
- Teuchos::RCP<ROL::Reduced_Objective_SimOpt<RealT> > objReduced =
- Teuchos::rcp(new ROL::Reduced_Objective_SimOpt<RealT>(obj, con, up, up));
-
- /*** Check functional interface. ***/
- obj->checkGradient(x,d,true,*outStream);
- obj->checkHessVec(x,d,true,*outStream);
- con->checkApplyJacobian(x,d,*up,true,*outStream);
- con->checkApplyAdjointHessian(x,*dup,d,x,true,*outStream);
- con->checkAdjointConsistencyJacobian(*dup,d,x,true,*outStream);
- con->checkInverseJacobian_1(*up,*up,*up,*zp,true,*outStream);
- con->checkInverseAdjointJacobian_1(*up,*up,*up,*zp,true,*outStream);
- objReduced->checkGradient(*zp,*dzp,true,*outStream);
- objReduced->checkHessVec(*zp,*dzp,true,*outStream);
-
- /*** Solve optimization problem. ***/
-
- ROL::Algorithm<RealT> algo_tr("Trust Region",*parlist,false);
- zp->zero(); // set zero initial guess
- algo_tr.run(*zp, *objReduced, true, *outStream);
-
- ROL::Algorithm<RealT> algo_cs("Composite Step",*parlist,false);
- x.zero(); // set zero initial guess
- algo_cs.run(x, *cp, *obj, *con, true, *outStream);
-
- *outStream << std::endl << "|| u_approx - u_analytic ||_L2 = " << data->computeStateError(u_rcp) << std::endl;
-
- data->outputTpetraVector(u_rcp, "state.txt");
-
- }
- catch (std::logic_error err) {
- *outStream << err.what() << "\n";
- errorFlag = -1000;
- }; // end try
-
- if (errorFlag != 0)
- std::cout << "End Result: TEST FAILED\n";
- else
- std::cout << "End Result: TEST PASSED\n";
-
- return 0;
+
+ int NumRowsA = 2, NumColsA = 2;
+ int NumRowsB = 2, NumColsB = 1;
+ Epetra_SerialDenseMatrix A, B;
+ A.Shape(NumRowsA, NumColsA);
+ B.Shape(NumRowsB, NumColsB);
+ A(0,0) = 1.;
+ A(1,1) = 2.;
+
+ B(0,0) = 2.5;
+ B(1,0) = 2.;
+ Epetra_SerialDenseMatrix AtimesB;
+
+ AtimesB.Shape(NumRowsA,NumColsB);
+ double alpha = 1.0, beta = 1.0;
+ AtimesB.Multiply('N','N',alpha, A, B, beta);
+ std::cout << A;
+ std::cout << B;
+ std::cout << AtimesB;
+ return 0;
}
diff --git a/tlnos/src/wExample2.cpp b/tlnos/src/wExample2.cpp
index e2681111..b3bdb2c7 100644
--- a/tlnos/src/wExample2.cpp
+++ b/tlnos/src/wExample2.cpp
@@ -26,15 +26,15 @@ Example2::execute()
A(1,1) = 2.;
B(0,0) = 2.5;
- B(0,1) = 2.;
+ B(1,0) = 2.;
Epetra_SerialDenseMatrix AtimesB;
+
AtimesB.Shape(NumRowsA,NumColsB);
double alpha = 1.0, beta = 1.0;
AtimesB.Multiply('N','N',alpha, A, B, beta);
std::cout << A;
std::cout << B;
std::cout << AtimesB;
-
return 0;
}
diff --git a/tlnos/src/wExample5.cpp b/tlnos/src/wExample5.cpp
index a7513319..8391129a 100644
--- a/tlnos/src/wExample5.cpp
+++ b/tlnos/src/wExample5.cpp
@@ -1,98 +1,131 @@
#include "wExample5.h"
-
-// @HEADER
-// ***********************************************************************
-//
-// Panzer: A partial differential equation assembly
-// engine for strongly coupled complex multiphysics systems
-// Copyright (2011) Sandia Corporation
-//
-// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
-// the U.S. Government retains certain rights in this software.
-//
-// Redistribution and use in source and binary forms, with or without
-// modification, are permitted provided that the following conditions are
-// met:
-//
-// 1. Redistributions of source code must retain the above copyright
-// notice, this list of conditions and the following disclaimer.
-//
-// 2. Redistributions in binary form must reproduce the above copyright
-// notice, this list of conditions and the following disclaimer in the
-// documentation and/or other materials provided with the distribution.
-//
-// 3. Neither the name of the Corporation nor the names of the
-// contributors may be used to endorse or promote products derived from
-// this software without specific prior written permission.
+/*
+ #@HEADER
+ # ************************************************************************
+ #
+ # Moertel FE Package
+ # Copyright (2006) Sandia Corporation
+ #
+ # Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
+ # license for use of this work by or on behalf of the U.S. Government.
+ #
+ # Redistribution and use in source and binary forms, with or without
+ # modification, are permitted provided that the following conditions are
+ # met:
+ #
+ # 1. Redistributions of source code must retain the above copyright
+ # notice, this list of conditions and the following disclaimer.
+ #
+ # 2. Redistributions in binary form must reproduce the above copyright
+ # notice, this list of conditions and the following disclaimer in the
+ # documentation and/or other materials provided with the distribution.
+ #
+ # 3. Neither the name of the Corporation nor the names of the
+ # contributors may be used to endorse or promote products derived from
+ # this software without specific prior written permission.
+ #
+ # THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
+ # EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ # IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
+ # PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
+ # CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
+ # EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+ # PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
+ # PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
+ # LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
+ # NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+ # SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ #
+ # Questions? Contact Glen Hansen (gahanse@sandia.gov)
+ #
+ # ************************************************************************
+ #@HEADER
+ */
+/*!
+ * \file TwoSquares.cpp
+ *
+ * \brief Simple serial example showing Moertel usage and solver interfaces
+ *
+ * \date Last update do Doxygen: 20-March-06
+ *
+ */
+#ifdef HAVE_MPI
+#include "mpi.h"
+#include "Epetra_MpiComm.h"
+#else
+#include "Epetra_SerialComm.h"
+#endif
+
+// MOERTEL headers
+#include "mrtr_manager.H"
+#include "mrtr_segment_linear1D.H"
+
+// Galeri headers
+#include "Galeri_Utils.h"
+#include "Galeri_FiniteElements.h"
+
+#ifdef MOERTEL_HAVE_EXODUS
+#include "ExodusInterface.h"
+#endif
+#include "ExodusInterface.h"
+using namespace Galeri;
+using namespace Galeri::FiniteElements;
+
+// ==========================================================
+// This file solves the scalar problem
//
-// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
-// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
-// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
-// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
-// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
-// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
-// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
-// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
-// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
-// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+// - \mu \nabla u + \sigma u = f on \Omega
+// u = g on \partial \Omega
//
-// Questions? Contact Roger P. Pawlowski (rppawlo@sandia.gov) and
-// Eric C. Cyr (eccyr@sandia.gov)
-// ***********************************************************************
-// @HEADER
-
-#include <Teuchos_ConfigDefs.hpp>
-#include <Teuchos_UnitTestHarness.hpp>
-#include <Teuchos_RCP.hpp>
-#include <Teuchos_TimeMonitor.hpp>
-#include <Teuchos_FancyOStream.hpp>
-
-#include "Teuchos_DefaultComm.hpp"
-#include "Teuchos_GlobalMPISession.hpp"
-
-#include "Phalanx_KokkosUtilities.hpp"
-
-#include "PanzerAdaptersSTK_config.hpp"
-#include "Panzer_GlobalData.hpp"
-#include "Panzer_Workset_Builder.hpp"
-#include "Panzer_WorksetContainer.hpp"
-#include "Panzer_AssemblyEngine.hpp"
-#include "Panzer_AssemblyEngine_InArgs.hpp"
-#include "Panzer_AssemblyEngine_TemplateManager.hpp"
-#include "Panzer_AssemblyEngine_TemplateBuilder.hpp"
-#include "Panzer_LinearObjFactory.hpp"
-#include "Panzer_EpetraLinearObjFactory.hpp"
-#include "Panzer_DOFManagerFactory.hpp"
-#include "Panzer_FieldManagerBuilder.hpp"
-#include "Panzer_PureBasis.hpp"
-#include "Panzer_GlobalData.hpp"
-
-#include "PanzerAdaptersSTK_config.hpp"
-#include "Panzer_STK_WorksetFactory.hpp"
-#include "Panzer_STKConnManager.hpp"
-#include "Panzer_STK_Version.hpp"
-#include "Panzer_STK_Interface.hpp"
-#include "Panzer_STK_SquareQuadMeshFactory.hpp"
-#include "Panzer_STK_SetupUtilities.hpp"
-#include "Panzer_STK_Utilities.hpp"
-
-#include "Epetra_MpiComm.h"
+// where \Omega is a 2D rectangle, divided into triangles.
+// The input grid should be generated using similar
+// conventions of file galeri/data/TwoSquares.m:
+// - the bc ID of 10 and 20 are for the mortar interface
+// - the bc ID of 0 is for the external domain.
+// ==========================================================
+
+double Diffusion5(const double& x, const double& y, const double& z)
+{
+ return (1.0);
+}
-#include "EpetraExt_RowMatrixOut.h"
-#include "EpetraExt_VectorOut.h"
+double Source5(const double& x, const double& y, const double& z)
+{
+ return (0.0);
+}
-#include "Example_BCStrategy_Factory.hpp"
-#include "Example_ClosureModel_Factory_TemplateBuilder.hpp"
-#include "Example_EquationSetFactory.hpp"
+double Force5(const double& x, const double& y, const double& z)
+{
+ if (y < 0.8)
+ return(1.0);
+ else
+ return(0.0);
+}
-#include "AztecOO.h"
+// Specifies the boundary condition.
+int BoundaryType5(const int& Patch)
+{
+ if (Patch == 10 || Patch == 20)
+ return(GALERI_DO_NOTHING);
+ else
+ return(GALERI_DIRICHLET);
+}
-using Teuchos::RCP;
-using Teuchos::rcp;
+// Specifies the boundary condition.
+double BoundaryValue5(const double& x, const double& y,
+ const double& z, const int& Patch)
+{
+ if (x == -1.0 || x == 1.0)
+ return(0.0);
+ else if (Patch == 10 || Patch == 20)
+ return(1.0);
+ else
+ return (0.0);
+}
-void testInitialization(const Teuchos::RCP<Teuchos::ParameterList>& ipb,
- std::vector<panzer::BC>& bcs);
+// =========== //
+// main driver //
+// =========== //
using namespace tlnos;
@@ -102,313 +135,410 @@ Example5::Example5()
int
-Example5::execute()
+Example5::execute()
{
-
- using Teuchos::RCP;
- using Teuchos::rcp_dynamic_cast;
- using panzer::StrPureBasisPair;
- using panzer::StrPureBasisComp;
-
- PHX::InitializeKokkosDevice();
-
- static int argc = 1;
- char **argv = new char*[2];// mem leak volontaire
- argv[0] = new char[8]; strcpy(argv[0], "myprog"); // mem leak volontaire
- argv[1] = new char[1]; strcpy(argv[1], ""); // mem leak volontaire
-
- std::cout << argv[0] << std::endl;
-
- Teuchos::GlobalMPISession mpiSession(&argc, &argv);
-
-
- RCP<Epetra_Comm> Comm = Teuchos::rcp(new Epetra_MpiComm(MPI_COMM_WORLD));
- Teuchos::FancyOStream out(Teuchos::rcpFromRef(std::cout));
- out.setOutputToRootOnly(0);
- out.setShowProcRank(true);
-
- std::cout << "A" << std::endl;
-
-
-
- // variable declarations
- ////////////////////////////////////////////////////
-
- // factory definitions
- Teuchos::RCP<Example::EquationSetFactory> eqset_factory =
- Teuchos::rcp(new Example::EquationSetFactory); // where poison equation is defined
- Example::BCStrategyFactory bc_factory; // where boundary conditions are defined
-
- panzer_stk_classic::SquareQuadMeshFactory mesh_factory;
-
- // other declarations
- const std::size_t workset_size = 20;
-
- // construction of uncommitted (no elements) mesh
- ////////////////////////////////////////////////////////
-
- // set mesh factory parameters
- RCP<Teuchos::ParameterList> pl = rcp(new Teuchos::ParameterList);
- pl->set("X Blocks",1);
- pl->set("Y Blocks",1);
- pl->set("X Elements",10);
- pl->set("Y Elements",10);
- mesh_factory.setParameterList(pl);
-
- RCP<panzer_stk_classic::STK_Interface> mesh = mesh_factory.buildUncommitedMesh(MPI_COMM_WORLD);
-
- // construct input physics and physics block
- ////////////////////////////////////////////////////////
-
- Teuchos::RCP<Teuchos::ParameterList> ipb = Teuchos::parameterList("Physics Blocks");
- std::vector<panzer::BC> bcs;
- std::vector<RCP<panzer::PhysicsBlock> > physicsBlocks;
- {
- bool build_transient_support = false;
-
- testInitialization(ipb, bcs);
-
- const panzer::CellData volume_cell_data(workset_size, mesh->getCellTopology("eblock-0_0"));
-
- // GobalData sets ostream and parameter interface to physics
- Teuchos::RCP<panzer::GlobalData> gd = panzer::createGlobalData();
-
- // Can be overridden by the equation set
- int default_integration_order = 1;
-
- // the physics block nows how to build and register evaluator with the field manager
- RCP<panzer::PhysicsBlock> pb
- = rcp(new panzer::PhysicsBlock(ipb,
- "eblock-0_0",
- default_integration_order,
- volume_cell_data,
- eqset_factory,
- gd,
- build_transient_support));
-
- // we can have more than one physics block, one per element block
- physicsBlocks.push_back(pb);
- }
-
- std::cout << "B" << std::endl;
-
- // finish building mesh, set required field variables and mesh bulk data
- ////////////////////////////////////////////////////////////////////////
-
- {
- RCP<panzer::PhysicsBlock> pb = physicsBlocks[0]; // we are assuming only one physics block
-
- const std::vector<StrPureBasisPair> & blockFields = pb->getProvidedDOFs();
-
- // insert all fields into a set
- std::set<StrPureBasisPair,StrPureBasisComp> fieldNames;
- fieldNames.insert(blockFields.begin(),blockFields.end());
-
- // add basis to DOF manager: block specific
- std::set<StrPureBasisPair,StrPureBasisComp>::const_iterator fieldItr;
- for (fieldItr=fieldNames.begin();fieldItr!=fieldNames.end();++fieldItr)
- mesh->addSolutionField(fieldItr->first,pb->elementBlockID());
-
- mesh_factory.completeMeshConstruction(*mesh,MPI_COMM_WORLD);
- }
-
- std::cout << "C" << std::endl;
-
- // build worksets
- ////////////////////////////////////////////////////////
-
- Teuchos::RCP<panzer_stk_classic::WorksetFactory> wkstFactory
- = Teuchos::rcp(new panzer_stk_classic::WorksetFactory(mesh)); // build STK workset factory
- Teuchos::RCP<panzer::WorksetContainer> wkstContainer // attach it to a workset container (uses lazy evaluation)
- = Teuchos::rcp(new panzer::WorksetContainer(wkstFactory,physicsBlocks,workset_size));
-
- std::cout << "C1" << std::endl;
- // build DOF Manager and linear object factory
- /////////////////////////////////////////////////////////////
-
- // build the connection manager
- const Teuchos::RCP<panzer::ConnManager<int,int> >
- conn_manager = Teuchos::rcp(new panzer_stk_classic::STKConnManager<int>(mesh));
-
- panzer::DOFManagerFactory<int,int> globalIndexerFactory;
- RCP<panzer::UniqueGlobalIndexer<int,int> > dofManager
- = globalIndexerFactory.buildUniqueGlobalIndexer(Teuchos::opaqueWrapper(MPI_COMM_WORLD),physicsBlocks,conn_manager);
-
- // construct some linear algebra object, build object to pass to evaluators
- Teuchos::RCP<panzer::LinearObjFactory<panzer::Traits> > linObjFactory
- = Teuchos::rcp(new panzer::EpetraLinearObjFactory<panzer::Traits,int>(Comm.getConst(),dofManager));
-
- std::cout << "C2" << std::endl;
- // setup closure model
- /////////////////////////////////////////////////////////////
-
- // Add in the application specific closure model factory
- panzer::ClosureModelFactory_TemplateManager<panzer::Traits> cm_factory;
- Example::ClosureModelFactory_TemplateBuilder cm_builder;
- cm_factory.buildObjects(cm_builder);
-
- Teuchos::ParameterList closure_models("Closure Models");
- closure_models.sublist("solid").sublist("SOURCE_TEMPERATURE").set<double>("Value",0.0); // a constant source
- // SOURCE_TEMPERATURE field is required by the PoissonEquationSet
-
- Teuchos::ParameterList user_data("User Data"); // user data can be empty here
-
- std::cout << "C3" << std::endl;
- // setup field manager builder
- /////////////////////////////////////////////////////////////
-
- Teuchos::RCP<panzer::FieldManagerBuilder> fmb =
- Teuchos::rcp(new panzer::FieldManagerBuilder);
- std::cout << "C3.1" << std::endl;
- fmb->setWorksetContainer(wkstContainer);
- std::cout << "C3.2" << std::endl;
- fmb->setupVolumeFieldManagers(physicsBlocks,cm_factory,closure_models,*linObjFactory,user_data);
- std::cout << "C3.3" << std::endl;
- fmb->setupBCFieldManagers(bcs,physicsBlocks,*eqset_factory,cm_factory,bc_factory,closure_models,
- *linObjFactory,user_data);
-
- std::cout << "C4" << std::endl;
- // setup assembly engine
- /////////////////////////////////////////////////////////////
-
- // build assembly engine: The key piece that brings together everything and
- // drives and controls the assembly process. Just add
- // matrices and vectors
- panzer::AssemblyEngine_TemplateManager<panzer::Traits> ae_tm;
- panzer::AssemblyEngine_TemplateBuilder builder(fmb,linObjFactory);
- ae_tm.buildObjects(builder);
-
- std::cout << "D" << std::endl;
-
- // assemble linear system
- /////////////////////////////////////////////////////////////
-
- // build linear algebra objects: Ghost is for parallel assembly, it contains
- // local element contributions summed, the global IDs
- // are not unique. The non-ghosted or "global"
- // container will contain the sum over all processors
- // of the ghosted objects. The global indices are unique.
- RCP<panzer::LinearObjContainer> ghostCont = linObjFactory->buildGhostedLinearObjContainer();
- RCP<panzer::LinearObjContainer> container = linObjFactory->buildLinearObjContainer();
- linObjFactory->initializeGhostedContainer(panzer::LinearObjContainer::X |
- panzer::LinearObjContainer::F |
- panzer::LinearObjContainer::Mat,*ghostCont);
- linObjFactory->initializeContainer(panzer::LinearObjContainer::X |
- panzer::LinearObjContainer::F |
- panzer::LinearObjContainer::Mat,*container);
- ghostCont->initialize();
- container->initialize();
-
- panzer::AssemblyEngineInArgs input(ghostCont,container);
- input.alpha = 0;
- input.beta = 1;
-
- // evaluate physics: This does both the Jacobian and residual at once
- ae_tm.getAsObject<panzer::Traits::Jacobian>()->evaluate(input);
-
-
- std::cout << "E" << std::endl;
- // solve linear system
- /////////////////////////////////////////////////////////////
-
- // convert generic linear object container to epetra container
- RCP<panzer::EpetraLinearObjContainer> ep_container
- = rcp_dynamic_cast<panzer::EpetraLinearObjContainer>(container);
-
- // Setup the linear solve: notice A is used directly
- Epetra_LinearProblem problem(&*ep_container->get_A(),&*ep_container->get_x(),&*ep_container->get_f());
-
- // build the solver
- AztecOO solver(problem);
- solver.SetAztecOption(AZ_solver,AZ_gmres); // we don't push out dirichlet conditions
- solver.SetAztecOption(AZ_precond,AZ_none);
- solver.SetAztecOption(AZ_kspace,300);
- solver.SetAztecOption(AZ_output,10);
- solver.SetAztecOption(AZ_precond,AZ_Jacobi);
-
- std::cout << "F" << std::endl;
- // solve the linear system
- solver.Iterate(1000,1e-5);
-
- // we have now solved for the residual correction from
- // zero in the context of a Newton solve.
- // J*e = -r = -(f - J*0) where f = J*u
- // Therefore we have J*e=-J*u which implies e = -u
- // thus we will scale the solution vector
- ep_container->get_x()->Scale(-1.0);
-
- // output data (optional)
- /////////////////////////////////////////////////////////////
-
- std::cout << "G" << std::endl;
- // write out linear system
- if(true) {
- EpetraExt::RowMatrixToMatrixMarketFile("a_op.mm",*ep_container->get_A());
- EpetraExt::VectorToMatrixMarketFile("x_vec.mm",*ep_container->get_x());
- EpetraExt::VectorToMatrixMarketFile("b_vec.mm",*ep_container->get_f());
- }
-
- std::cout << "H" << std::endl;
- // write out solution to matrix
- if(false) {
- // redistribute solution vector to ghosted vector
- linObjFactory->globalToGhostContainer(*container,*ghostCont, panzer::EpetraLinearObjContainer::X
- | panzer::EpetraLinearObjContainer::DxDt);
-
- // get X Epetra_Vector from ghosted container
- RCP<panzer::EpetraLinearObjContainer> ep_ghostCont = rcp_dynamic_cast<panzer::EpetraLinearObjContainer>(ghostCont);
- panzer_stk_classic::write_solution_data(*dofManager,*mesh,*ep_ghostCont->get_x());
- mesh->writeToExodus("output.exo");
- }
-
- std::cout << "I" << std::endl;
- // all done!
- /////////////////////////////////////////////////////////////
-
- PHX::FinalizeKokkosDevice();
-
- return 0;
+#ifdef HAVE_MPI
+ static int argc = 1;
+ char **argv = new char*[2];// mem leak volontaire
+ argv[0] = new char[8]; strcpy(argv[0], "myprog"); // mem leak volontaire
+ argv[1] = new char[1]; strcpy(argv[1], ""); // mem leak volontaire
+
+ MPI_Init(&argc,&argv);
+ Epetra_MpiComm Comm(MPI_COMM_WORLD);
+#else
+ Epetra_SerialComm Comm;
+#endif
+
+ int status = 0; // return status
+
+ try {
+
+ // this example is in serial only
+ if (Comm.NumProc()>1) exit(0);
+
+ // read grid from file, see also TwoSquares.m used to generate the grids
+ /*
+ % +------+
+ % | S2 |
+ % +------+ <- edge has tag 20 and 9 elements
+ % +------+ <- edge has tag 10 and 10 elements
+ % | S1 |
+ % +------+
+ %
+ % where S1 = (-1,1) x (-1,1) and S2 = (-1, 1) x (1, 3).
+ */
+
+ FileGrid Grid(Comm, "TwoSquares.grid");
+
+
+
+
+ // create a list of all nodes that are linked to a face
+ // with tag 10 and tag 20
+ map<int,int> nodes10;
+ map<int,int> nodes20;
+ for (int i=0; i<Grid.NumMyBoundaryFaces(); ++i)
+ {
+ int tag;
+ int nodeids[2];
+ Grid.FaceVertices(i,tag,nodeids);
+ if (tag==10)
+ {
+ nodes10[nodeids[0]] = nodeids[0];
+ nodes10[nodeids[1]] = nodeids[1];
+ }
+ else if (tag==20)
+ {
+ nodes20[nodeids[0]] = nodeids[0];
+ nodes20[nodeids[1]] = nodeids[1];
+ }
+ else
+ continue;
+ }
+
+ // ------------------------------------------------------------- //
+ // create an empty MOERTEL::Interface, in this example just one
+ // ------------------------------------------------------------- //
+ int printlevel = 0; // ( moertel takes values 0 - 10 )
+ //int printlevel = 9; // ( moertel takes values 0 - 10 )
+ MOERTEL::Interface interface(0,true,Comm,printlevel);
+
+ // ------------------------------------------------------------- //
+ // Add nodes on both sides of interface to interface
+ // loop all nodes in the maps nodes10 and nodes20 and add them
+ // to the interface with unique ids
+ // tag 10 will become interface side 0
+ // tag 20 will become interface side 1
+ // ------------------------------------------------------------- //
+ map<int,int>::iterator curr;
+ // do tag==10 or interface side 0
+ for (curr = nodes10.begin(); curr != nodes10.end(); ++curr)
+ {
+ // get unique node id (here it's equal to the degree of freedom on that node)
+ int nodeid = curr->second;
+ // get node coordinates
+ double coord[3];
+ Grid.VertexCoord(nodeid,coord);
+ // get dirichlet boundary conditions
+ double bou = BoundaryValue5(coord[0],coord[1],coord[2],10);
+ bool dboundary = false;
+ if (bou==0.0)
+ dboundary = true;
+ // create a moertel node
+ MOERTEL::Node node(nodeid,coord,1,&nodeid,dboundary,printlevel);
+ // add node to the interface on side 0
+ interface.AddNode(node,0);
+ }
+ nodes10.clear();
+
+ // do tag==20 or interface side 1
+ for (curr = nodes20.begin(); curr != nodes20.end(); ++curr)
+ {
+ // get unique node id (here it's equal to the degree of freedom on that node)
+ int nodeid = curr->second;
+ // get node coordinates
+ double coord[3];
+ Grid.VertexCoord(nodeid,coord);
+ // get dirichlet boundary conditions
+ double bou = BoundaryValue5(coord[0],coord[1],coord[2],20);
+ bool dboundary = false;
+ if (bou==0.0)
+ dboundary = true;
+ // create a moertel node
+ MOERTEL::Node node(nodeid,coord,1,&nodeid,dboundary,printlevel);
+ // add node to the interface on side 1
+ interface.AddNode(node,1);
+ }
+ nodes20.clear();
+
+ // ------------------------------------------------------------- //
+ // add segments on both sides of the interface to the interface
+ // ------------------------------------------------------------- //
+ for (int i=0; i<Grid.NumMyBoundaryFaces(); ++i)
+ {
+ int tag;
+ int nodeids[2];
+ Grid.FaceVertices(i,tag,nodeids);
+ if (tag != 10 && tag != 20)
+ continue;
+ // create a segment (galeri calls it a face)
+ MOERTEL::Segment_Linear1D segment(i,2,nodeids,printlevel);
+
+ // add it to the interface on side 0
+ if (tag==10)
+ interface.AddSegment(segment,0);
+ // add it to the interface on side 1
+ else if (tag==20)
+ interface.AddSegment(segment,1);
+ }
+
+ // ------------------------------------------------------------- //
+ // choose the mortar side of the interface (0 or 1)
+ // here: let the package choose it (-2)
+ // ------------------------------------------------------------- //
+ interface.SetMortarSide(-2);
+
+ // ------------------------------------------------------------- //
+ // As we do not know the mortar side yet (we decided to le the
+ // package choose it), we can not set a dual trace function (mortar space)
+ // as we don't know the side to set it to
+ // so we just give orders for the function type
+ // ------------------------------------------------------------- //
+ interface.SetFunctionTypes(MOERTEL::Function::func_Linear1D, // primal trace space
+ MOERTEL::Function::func_DualLinear1D); // dual mortar space (recommended)
+ //MOERTEL::Function::func_Linear1D); // mortar space (not recommended)
+
+ // ------------------------------------------------------------- //
+ // complete the interface
+ // ------------------------------------------------------------- //
+ if (!interface.Complete())
+ {
+ cout << "Interface completion returned false\n";
+ exit(EXIT_FAILURE);
+ }
+
+ // ------------------------------------------------------------- //
+ // create an empty MOERTEL::Manager for 2D problems
+ // It organizes everything from integration to solution
+ // ------------------------------------------------------------- //
+ MOERTEL::Manager manager(Comm,printlevel);
+ manager.SetDimension(MOERTEL::Manager::manager_2D);
+
+ // ------------------------------------------------------------- //
+ // Add the interface to the manager
+ // ------------------------------------------------------------- //
+ manager.AddInterface(interface);
+
+ // ------------------------------------------------------------- //
+ // for mortar integration, the mortar manager needs to know about
+ // the rowmap of the original (uncoupled) problem because it will
+ // create coupling matrices D and M matching that rowmap
+ // ------------------------------------------------------------- //
+ manager.SetProblemMap(&Grid.RowMap());
+
+ // ============================================================= //
+ // choose integration parameters
+ // ============================================================= //
+ Teuchos::ParameterList& moertelparams = manager.Default_Parameters();
+ // this does not affect this 2D case
+ moertelparams.set("exact values at gauss points",true);
+ // 1D interface possible values are 1,2,3,4,5,6,7,8,10 (2 recommended with linear shape functions)
+ moertelparams.set("number gaussian points 1D",2);
+ // 2D interface possible values are 3,6,12,13,16,19,27
+ moertelparams.set("number gaussian points 2D",27);
+
+ // ============================================================= //
+ // Here we are done with the construction phase of the interface
+ // so we can integrate the mortar integrals
+ // (Note we have not yet evaluated the PDE at all!)
+ // ============================================================= //
+ manager.Mortar_Integrate();
+
+ // print interface information
+ // (Manager, Interface, Segment, Node implement the << operator)
+ if (printlevel) cout << manager;
+
+ // ======================================================== //
+ // Prepares the linear system. This requires the definition //
+ // of a quadrature formula compatible with the grid, a //
+ // variational formulation, and a problem object which take //
+ // care of filling matrix and right-hand side. //
+ // NOTE:
+ // we are doing this AFTER we did all the mortar stuff to
+ // show that the mortar integration is actually PDE-independent
+ // ======================================================== //
+ Epetra_CrsMatrix A(Copy, Grid.RowMap(), 0);
+ Epetra_Vector LHS(Grid.RowMap(),true);
+ Epetra_Vector RHS(Grid.RowMap());
+
+ int NumQuadratureNodes = 3;
+
+ GalerkinVariational<TriangleQuadrature>
+ Laplace2D(NumQuadratureNodes, Diffusion5, Source5, Force5,
+ BoundaryValue5, BoundaryType5);
+
+ LinearProblem FiniteElementProblem(Grid, Laplace2D, A, LHS, RHS);
+ FiniteElementProblem.Compute();
+
+ // ============================================================= //
+ // this is Galeri's dense solve method if you'd like to see how
+ // the uncoupled solution looks like
+ // ============================================================= //
+ Solve(&A, &LHS, &RHS);
+
+ // ============================================================= //
+ // Since we now have all the pieces together, let's use the
+ // MOERTEL interface to other Trilinos packages to solve the
+ // problem
+ // ============================================================= //
+
+ // ------------------------------------------------------------- //
+ // Create a Teuchos::ParameterList to hold solver arguments and also
+ // to hold arguments for connected packages AztecOO, ML and Amesos
+ // ------------------------------------------------------------- //
+ Teuchos::ParameterList list;
+
+ // ------------------------------------------------------------- //
+ // Choose which type of system of equations to generate
+ // Note that only when using DUAL mortar spaces an spd system
+ // can be generated
+ // ------------------------------------------------------------- //
+ //list.set("System","SaddleSystem");
+ list.set("System","SPDSystem");
+
+ // ------------------------------------------------------------- //
+ // choose solver, currently there is a choice of Amesos and ML/AztecOO
+ // Note that if "SaddleSystem" was chosen as system of equations
+ // ML/AztecOO doesn't work
+ // ------------------------------------------------------------- //
+ list.set("Solver","Amesos");
+ //list.set("Solver","ML/Aztec");
+
+ // ------------------------------------------------------------- //
+ // create sublists for packages Amesos, ML, AztecOO. they will be
+ // passed on to the individual package that is used
+ // ------------------------------------------------------------- //
+
+ // Amesos parameters:
+ Teuchos::ParameterList& amesosparams = list.sublist("Amesos");
+ amesosparams.set("Solver","Amesos_Klu");
+ amesosparams.set("PrintTiming",true);
+ amesosparams.set("PrintStatus",true);
+ amesosparams.set("UseTranspose",true);
+
+ // AztecOO parameters
+ Teuchos::ParameterList& aztecparams = list.sublist("Aztec");
+ aztecparams.set("AZ_solver","AZ_cg");
+ // This will involve ML as preconditioner
+ // See the AztecOO manual for other options
+ aztecparams.set("AZ_precond","AZ_user_precond");
+ aztecparams.set("AZ_max_iter",1200);
+ aztecparams.set("AZ_output",100);
+ aztecparams.set("AZ_tol",1.0e-7);
+ aztecparams.set("AZ_scaling","AZ_none");
+
+ // ML parameters
+ // As Moertel comes with his own special mortar multigrid hierachy
+ // based on ML's smoothed aggregation, not all ML parameters are recognized
+ // It basically recognizes everything that recognized by ML's MLAPI
+ // (ML Application Programming Interface), see MLAPI documentation
+ Teuchos::ParameterList& mlparams = list.sublist("ML");
+ ML_Epetra::SetDefaults("SA",mlparams);
+ mlparams.set("output",10);
+ mlparams.set("print unused",1-2);
+ mlparams.set("increasing or decreasing","increasing");
+ mlparams.set("PDE equations",1);
+ mlparams.set("max levels",10);
+ mlparams.set("coarse: max size",80);
+ mlparams.set("aggregation: type","Uncoupled");
+ mlparams.set("aggregation: damping factor",1.33);
+
+ // original : The unmodified ML (smoothed) aggregation prolongator
+ // mod_simple : ( R * (I-B*W^T) )^T
+ // mod_middle : ( (I - R B*W^T*P) * R * (I-B*W^T) )^T
+ // mod_full : ( (I - R B*W^T*P) * R * (I-B*W^T) )^T + ( R B*W^T*P * R * B*W^T )^T
+ mlparams.set("prolongator: type","mod_middle");
+
+ // solvers/smoothers currently recognized by the MLAPI_InverseOperator are
+ // Ifpack:
+ // "Jacobi" "Gauss-Seidel" "symmetric Gauss-Seidel"
+ // "ILU" "ILUT" "IC" "ICT" "LU" "Amesos" "Amesos-KLU"
+ // and accompanying parameters
+ // ML:
+ // "MLS" "ML MLS" "ML symmetric Gauss-Seidel"
+ // "ML Gauss-Seidel"
+ // and accompanying parameters
+ mlparams.set("coarse: type","Amesos-KLU");
+ mlparams.set("smoother: type","symmetric Gauss-Seidel");
+ mlparams.set("smoother: MLS polynomial order",3);
+ mlparams.set("relaxation: min diagonal value",0.1);
+ mlparams.set("smoother: damping factor",0.67);
+ mlparams.set("smoother: sweeps",1);
+ mlparams.set("smoother: pre or post","both");
+ // the ns for Laplace is the constant
+ int dimnullspace = 1;
+ int nummyrows = manager.ProblemMap()->NumMyElements();
+ int dimnsp = dimnullspace*nummyrows;
+ double* nsp = new double[dimnsp];
+ for (int i=0; i<dimnsp; ++i) nsp[i] = 1.;
+ mlparams.set("null space: type","pre-computed");
+ mlparams.set("null space: add default vectors",false);
+ mlparams.set("null space: dimension",dimnullspace);
+ mlparams.set("null space: vectors",nsp);
+
+ // ------------------------------------------------------------- //
+ // Pass input matrix to Moertel,
+ // Moertel does NOT take ownership of A!
+ // ------------------------------------------------------------- //
+ manager.SetInputMatrix(&A,false);
+
+ std::cout << list;
+
+ // ============================================================= //
+ // Solve
+ // ============================================================= //
+ //manager.Solve(list,LHS,RHS);
+
+ // ------------------------------------------------------------- //
+ // One can reset the solver, change parameters and/or matrix (with the
+ // same rowmap) and solve again if needed.
+ // If no ResetSolver() is called, the same matrix and preconditioner
+ // will be used to solve for multiple rhs
+ // ------------------------------------------------------------- //
+ //manager.ResetSolver();
+ //LHS.PutScalar(0.0);
+ //manager.SetInputMatrix(&A,false);
+ //manager.Solve(list,LHS,RHS);
+
+#ifdef MOERTEL_HAVE_EXODUS
+
+ // ================== //
+ // Output using ExodusII //
+ // ================== //
+ ExodusInterface exodus(Comm);
+ exodus.Write(Grid, "output", LHS);
+
+ std::cout << "Exodus is used for output" << std::endl;
+#else
+
+ // ================== //
+ // Output using ExodusII //
+ // ================== //
+ ExodusInterface exodus(Comm);
+ exodus.Write(Grid, "output", LHS);
+
+ std::cout << "Exodus is used for output" << std::endl;
+#endif
+
+
+ }
+ catch (int e) {
+ cerr << "Caught exception, value = " << e << endl;
+ status = 1;
+ }
+ catch (Galeri::Exception& rhs) {
+
+ cerr << "Caught Galeri exception: ";
+ rhs.Print();
+ status = 1;
+ }
+ catch (...) {
+ cerr << "Caught generic exception" << endl;
+ status = 1;
+ }
+
+#ifdef HAVE_MPI
+ MPI_Finalize();
+#endif
+
+ if (status == 0)
+ std::cout << "\nTest passed!" << endl;
+ else
+ std::cout << "\nTest Failed!" << endl;
+
+
+ // Final return value (0 = successfull, non-zero = failure)
+
+ return status;
}
-void testInitialization(const Teuchos::RCP<Teuchos::ParameterList>& ipb,
- std::vector<panzer::BC>& bcs)
-{
- {
- Teuchos::ParameterList& p = ipb->sublist("Poisson Physics");
- p.set("Type","Poisson");
- p.set("Model ID","solid");
- p.set("Basis Type","HGrad");
- p.set("Basis Order",1);
- p.set("Integration Order",2);
- }
-
- {
- std::size_t bc_id = 0;
- panzer::BCType bctype = panzer::BCT_Dirichlet;
- std::string sideset_id = "left";
- std::string element_block_id = "eblock-0_0";
- std::string dof_name = "TEMPERATURE";
- std::string strategy = "Constant";
- double value = 5.0;
- Teuchos::ParameterList p;
- p.set("Value",value);
- panzer::BC bc(bc_id, bctype, sideset_id, element_block_id, dof_name,
- strategy, p);
- bcs.push_back(bc);
- }
-
- {
- std::size_t bc_id = 1;
- panzer::BCType bctype = panzer::BCT_Dirichlet;
- std::string sideset_id = "top";
- std::string element_block_id = "eblock-0_0";
- std::string dof_name = "TEMPERATURE";
- std::string strategy = "Constant";
- double value = -5.0;
- Teuchos::ParameterList p;
- p.set("Value",value);
- panzer::BC bc(bc_id, bctype, sideset_id, element_block_id, dof_name,
- strategy, p);
- bcs.push_back(bc);
- }
-}
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