build_linux.md

@@ -9,9 +9,11 @@ sudo apt install git
 sudo apt install build-essential cmake
 sudo apt install swig
 sudo apt install libeigen3-dev
-sudo apt install gmsh
 # Python 3
-sudo apt install python3-dev python3-numpy python3-scipy
+sudo apt install python3-dev
+python3 -m pip install numpy scipy matplotlib voluptuous
+# Gmsh
+python3 -m pip install gmsh
 ```
 **Optional packages**
 ```bash
@@ -20,29 +22,34 @@ git clone https://github.com/SciCompKL/CoDiPack.git
 export INCLUDE=${INCLUDE}:/path/to/codipack/include
 # VTK
 sudo apt install python3-vtk9
+python3 -m pip install vtk
 # Documentation
-sudo apt install doxygen
-sudo apt install graphviz
+sudo apt install doxygen graphviz
 ```
 **Build**
 ```bash
 # Get the code
 git lfs install # enable large file support
-git clone git@gitlab.uliege.be:am-dept/sdpm.git # ssh only
+git clone git@gitlab.uliege.be:am-dept/sdpm.git # ssh only for developers
 cd sdpm
 # Build
 mkdir build && cd build
 cmake ..
 make [-j4]
-[make install] # to install
 [make dox] # to build the documentation
 # Test
 ctest [-E exclude_pattern] [-R include_pattern] [-j4]
+# Install
+python3 -m pip install . [--user]
 ```
 For a complete list of options, refer to the [build](Build) page.  
 
 **Example**  
 From the SDPM root directory,
 ```bash
-python run.py sdpm/tests/lann.py
+python run.py sdpm/tests/lann.py [-v] [--nogui]
+```
+From anywhere, if the Python package has been installed,
+```bash
+sdpm-run your_example.py [-v] [--nogui]
 ```
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