[0KRunning with gitlab-runner 17.3.1 (66269445)[0;m
[0K on vaillant 9gMCJBcQ, system ID: s_75723125eadd[0;m
[0K[36;1mResolving secrets[0;m[0;m
section_start:1725606975:prepare_executor
[0K[0K[36;1mPreparing the "docker" executor[0;m[0;m
[0KUsing Docker executor with image rboman/waves-py3:latest ...[0;m
[0KPulling docker image rboman/waves-py3:latest ...[0;m
[0KUsing docker image sha256:8f9839f49d7ff7e9b9d431fc1e3fd1694c885e83e2ce167b66f5a145555f3863 for rboman/waves-py3:latest with digest rboman/waves-py3@sha256:eca97bd22fed99d331d855a1b8321cea567cc4155f2746f26be35bdff0b3a40d ...[0;m
section_end:1725606978:prepare_executor
[0Ksection_start:1725606978:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on runner-9gmcjbcq-project-2918-concurrent-1 via vaillant...
section_end:1725606979:prepare_script
[0Ksection_start:1725606979:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mFetching changes with git depth set to 20...[0;m
Initialized empty Git repository in /builds/am-dept/amfe-solvers/.git/
[32;1mCreated fresh repository.[0;m
[32;1mChecking out c0243791 as detached HEAD (ref is boman)...[0;m
[32;1mUpdating/initializing submodules recursively with git depth set to 20...[0;m
Submodule 'ext/amfe' (https://gitlab-ci-token:[MASKED]@gitlab.uliege.be/am-dept/amfe.git) registered for path 'ext/amfe'
Synchronizing submodule url for 'ext/amfe'
Cloning into '/builds/am-dept/amfe-solvers/ext/amfe'...
Submodule path 'ext/amfe': checked out '9d4ad324c7ba732d70b6f08c50030c83252a8e09'
[32;1mUpdated submodules[0;m
Synchronizing submodule url for 'ext/amfe'
Entering 'ext/amfe'
section_end:1725606981:get_sources
[0Ksection_start:1725606981:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build (145504)...[0;m
Downloading artifacts from coordinator... ok [0;m host[0;m=gitlab.uliege.be id[0;m=145504 responseStatus[0;m=200 OK token[0;m=glcbt-64
section_end:1725606982:download_artifacts
[0Ksection_start:1725606982:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0KUsing docker image sha256:8f9839f49d7ff7e9b9d431fc1e3fd1694c885e83e2ce167b66f5a145555f3863 for rboman/waves-py3:latest with digest rboman/waves-py3@sha256:eca97bd22fed99d331d855a1b8321cea567cc4155f2746f26be35bdff0b3a40d ...[0;m
[32;1m$ source /opt/intel/oneapi/mkl/latest/env/vars.sh[0;m
[32;1m$ source /opt/intel/oneapi/tbb/latest/env/vars.sh[0;m
[32;1m$ echo $(nproc)[0;m
64
[32;1m$ printenv | sort[0;m
CI=true
CI_API_GRAPHQL_URL=https://gitlab.uliege.be/api/graphql
CI_API_V4_URL=https://gitlab.uliege.be/api/v4
CI_BUILDS_DIR=/builds
CI_COMMIT_AUTHOR=Romain Boman <r.boman@uliege.be>
CI_COMMIT_BEFORE_SHA=03a97500714ea78f4d650d512617eaf6c071f2c9
CI_COMMIT_BRANCH=boman
CI_COMMIT_DESCRIPTION=
CI_COMMIT_MESSAGE=test ci on vaillant
CI_COMMIT_REF_NAME=boman
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CI_COMMIT_REF_SLUG=boman
CI_COMMIT_SHA=c0243791ce43ea33f4e6224a84d07fc39eb488ae
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CI_CONFIG_PATH=.gitlab-ci.yml
CI_DEFAULT_BRANCH=main
CI_DEPENDENCY_PROXY_DIRECT_GROUP_IMAGE_PREFIX=gitlab.uliege.be:443/am-dept/dependency_proxy/containers
CI_DEPENDENCY_PROXY_GROUP_IMAGE_PREFIX=gitlab.uliege.be:443/am-dept/dependency_proxy/containers
CI_DEPENDENCY_PROXY_PASSWORD=[MASKED]
CI_DEPENDENCY_PROXY_SERVER=gitlab.uliege.be:443
CI_DEPENDENCY_PROXY_USER=gitlab-ci-token
CI_DISPOSABLE_ENVIRONMENT=true
CI_JOB_ID=145506
CI_JOB_IMAGE=rboman/waves-py3:latest
CI_JOB_NAME=ctest
CI_JOB_NAME_SLUG=ctest
CI_JOB_STAGE=test
CI_JOB_STARTED_AT=2024-09-06T07:16:15Z
CI_JOB_STATUS=running
CI_JOB_TIMEOUT=3600
CI_JOB_TOKEN=[MASKED]
CI_JOB_URL=https://gitlab.uliege.be/am-dept/amfe-solvers/-/jobs/145506
CI_NODE_TOTAL=1
CI_PAGES_DOMAIN=gitlabpages.uliege.be
CI_PAGES_URL=https://am-dept.gitlabpages.uliege.be/amfe-solvers
CI_PIPELINE_CREATED_AT=2024-09-06T07:15:24Z
CI_PIPELINE_ID=44998
CI_PIPELINE_IID=19
CI_PIPELINE_NAME=
CI_PIPELINE_SOURCE=push
CI_PIPELINE_URL=https://gitlab.uliege.be/am-dept/amfe-solvers/-/pipelines/44998
CI_PROJECT_CLASSIFICATION_LABEL=
CI_PROJECT_DESCRIPTION=Example of FE solvers using the amfe library
CI_PROJECT_DIR=/builds/am-dept/amfe-solvers
CI_PROJECT_ID=2918
CI_PROJECT_NAME=amfe-solvers
CI_PROJECT_NAMESPACE=am-dept
CI_PROJECT_NAMESPACE_ID=59
CI_PROJECT_PATH=am-dept/amfe-solvers
CI_PROJECT_PATH_SLUG=am-dept-amfe-solvers
CI_PROJECT_REPOSITORY_LANGUAGES=python,c++,glsl,cmake,swig
CI_PROJECT_ROOT_NAMESPACE=am-dept
CI_PROJECT_TITLE=amfe-solvers
CI_PROJECT_URL=https://gitlab.uliege.be/am-dept/amfe-solvers
CI_PROJECT_VISIBILITY=public
CI_REGISTRY=gitlab.uliege.be:5050
CI_REGISTRY_IMAGE=gitlab.uliege.be:5050/am-dept/amfe-solvers
CI_REGISTRY_PASSWORD=[MASKED]
CI_REGISTRY_USER=gitlab-ci-token
CI_REPOSITORY_URL=https://gitlab-ci-token:[MASKED]@gitlab.uliege.be/am-dept/amfe-solvers.git
CI_RUNNER_DESCRIPTION=vaillant
CI_RUNNER_EXECUTABLE_ARCH=linux/amd64
CI_RUNNER_ID=30
CI_RUNNER_REVISION=66269445
CI_RUNNER_SHORT_TOKEN=9gMCJBcQ
CI_RUNNER_TAGS=["vaillant", "mn2l"]
CI_RUNNER_VERSION=17.3.1
CI_SERVER=yes
CI_SERVER_FQDN=gitlab.uliege.be
CI_SERVER_HOST=gitlab.uliege.be
CI_SERVER_NAME=GitLab
CI_SERVER_PORT=443
CI_SERVER_PROTOCOL=https
CI_SERVER_REVISION=df01858216e
CI_SERVER_SHELL_SSH_HOST=gitlab.uliege.be
CI_SERVER_SHELL_SSH_PORT=22
CI_SERVER_TLS_CA_FILE=/builds/am-dept/amfe-solvers.tmp/CI_SERVER_TLS_CA_FILE
CI_SERVER_URL=https://gitlab.uliege.be
CI_SERVER_VERSION=17.3.1-ee
CI_SERVER_VERSION_MAJOR=17
CI_SERVER_VERSION_MINOR=3
CI_SERVER_VERSION_PATCH=1
CI_TEMPLATE_REGISTRY_HOST=registry.gitlab.com
CMAKE_PREFIX_PATH=/opt/intel/oneapi/tbb/2021.13/env/..:/opt/intel/oneapi/mkl/2024.2/lib/cmake:
CPATH=/opt/intel/oneapi/tbb/2021.13/env/../include:/opt/intel/oneapi/mkl/2024.2/include:
DEBIAN_FRONTEND=noninteractive
FF_CLEAN_UP_FAILED_CACHE_EXTRACT=false
FF_DISABLE_AUTOMATIC_TOKEN_ROTATION=false
FF_DISABLE_POWERSHELL_STDIN=false
FF_DISABLE_UMASK_FOR_DOCKER_EXECUTOR=false
FF_DISABLE_UMASK_FOR_KUBERNETES_EXECUTOR=false
FF_ENABLE_BASH_EXIT_CODE_CHECK=false
FF_ENABLE_JOB_CLEANUP=false
FF_KUBERNETES_HONOR_ENTRYPOINT=false
FF_LOG_IMAGES_CONFIGURED_FOR_JOB=false
FF_NETWORK_PER_BUILD=false
FF_POSIXLY_CORRECT_ESCAPES=false
FF_PRINT_POD_EVENTS=false
FF_RESOLVE_FULL_TLS_CHAIN=false
FF_RETRIEVE_POD_WARNING_EVENTS=true
FF_SCRIPT_SECTIONS=false
FF_SECRET_RESOLVING_FAILS_IF_MISSING=true
FF_SET_PERMISSIONS_BEFORE_CLEANUP=true
FF_SKIP_NOOP_BUILD_STAGES=true
FF_TEST_FEATURE=false
FF_TIMESTAMPS=false
FF_USE_ADVANCED_POD_SPEC_CONFIGURATION=false
FF_USE_DIRECT_DOWNLOAD=true
FF_USE_DOCKER_AUTOSCALER_DIAL_STDIO=true
FF_USE_DUMB_INIT_WITH_KUBERNETES_EXECUTOR=false
FF_USE_DYNAMIC_TRACE_FORCE_SEND_INTERVAL=false
FF_USE_FASTZIP=false
FF_USE_GIT_BUNDLE_URIS=true
FF_USE_INIT_WITH_DOCKER_EXECUTOR=false
FF_USE_LEGACY_GCS_CACHE_ADAPTER=false
FF_USE_LEGACY_KUBERNETES_EXECUTION_STRATEGY=false
FF_USE_NEW_BASH_EVAL_STRATEGY=false
FF_USE_POD_ACTIVE_DEADLINE_SECONDS=true
FF_USE_POWERSHELL_PATH_RESOLVER=false
FF_USE_WINDOWS_JOB_OBJECT=false
FF_USE_WINDOWS_LEGACY_PROCESS_STRATEGY=false
GITLAB_CI=true
GITLAB_ENV=/builds/am-dept/amfe-solvers.tmp/gitlab_runner_env
GITLAB_FEATURES=audit_events,blocked_issues,board_iteration_lists,code_owners,code_review_analytics,full_codequality_report,group_activity_analytics,group_bulk_edit,issuable_default_templates,issue_weights,iterations,ldap_group_sync,merge_request_approvers,milestone_charts,multiple_issue_assignees,multiple_ldap_servers,multiple_merge_request_assignees,multiple_merge_request_reviewers,project_merge_request_analytics,protected_refs_for_users,push_rules,resource_access_token,seat_link,seat_usage_quotas,pipelines_usage_quotas,transfer_usage_quotas,product_analytics_usage_quotas,wip_limits,zoekt_code_search,blocked_work_items,description_diffs,send_emails_from_admin_area,repository_size_limit,maintenance_mode,scoped_issue_board,contribution_analytics,group_webhooks,member_lock,elastic_search,repository_mirrors,ai_chat,adjourned_deletion_for_projects_and_groups,admin_audit_log,auditor_user,blocking_merge_requests,board_assignee_lists,board_milestone_lists,ci_secrets_management,ci_pipeline_cancellation_restrictions,cluster_agents_ci_impersonation,cluster_agents_user_impersonation,cluster_deployments,code_owner_approval_required,code_suggestions,commit_committer_check,commit_committer_name_check,compliance_framework,custom_compliance_frameworks,custom_file_templates,custom_project_templates,cycle_analytics_for_groups,cycle_analytics_for_projects,db_load_balancing,default_branch_protection_restriction_in_groups,default_project_deletion_protection,delete_unconfirmed_users,dependency_proxy_for_packages,disable_name_update_for_users,disable_personal_access_tokens,domain_verification,epics,extended_audit_events,external_authorization_service_api_management,feature_flags_code_references,file_locks,geo,generic_alert_fingerprinting,git_two_factor_enforcement,group_allowed_email_domains,group_coverage_reports,group_forking_protection,group_level_compliance_dashboard,group_milestone_project_releases,group_project_templates,group_repository_analytics,group_saml,group_scoped_ci_variables,ide_schema_config,incident_metric_upload,instance_level_scim,jira_issues_integration,ldap_group_sync_filter,merge_request_performance_metrics,admin_merge_request_approvers_rules,merge_trains,metrics_reports,multiple_alert_http_integrations,multiple_approval_rules,multiple_group_issue_boards,object_storage,microsoft_group_sync,operations_dashboard,package_forwarding,pages_size_limit,pages_multiple_versions,productivity_analytics,project_aliases,protected_environments,reject_non_dco_commits,reject_unsigned_commits,remote_development,saml_group_sync,service_accounts,scoped_labels,smartcard_auth,ssh_certificates,swimlanes,target_branch_rules,type_of_work_analytics,minimal_access_role,unprotection_restrictions,ci_project_subscriptions,incident_timeline_view,oncall_schedules,escalation_policies,zentao_issues_integration,coverage_check_approval_rule,issuable_resource_links,group_protected_branches,group_level_merge_checks_setting,oidc_client_groups_claim,disable_deleting_account_for_users,disable_private_profiles,group_saved_replies,requested_changes_block_merge_request,project_saved_replies,group_ip_restriction,issues_analytics,password_complexity,group_wikis,email_additional_text,custom_file_templates_for_namespace,incident_sla,export_user_permissions,cross_project_pipelines,feature_flags_related_issues,merge_pipelines,ci_cd_projects,github_integration,ai_config_chat,ai_features,glab_ask_git_command,ai_analyze_ci_job_failure,ai_agents,ai_review_mr,api_discovery,api_fuzzing,auto_rollback,breach_and_attack_simulation,cluster_image_scanning,external_status_checks,combined_project_analytics_dashboards,compliance_pipeline_configuration,container_scanning,credentials_inventory,custom_roles,dast,dependency_scanning,dora4_analytics,epic_colors,enterprise_templates,environment_alerts,evaluate_group_level_compliance_pipeline,explain_code,external_audit_events,experimental_features,generate_description,generate_commit_message,generate_test_file,ai_generate_cube_query,git_abuse_rate_limit,group_ci_cd_analytics,group_level_compliance_adherence_report,group_level_compliance_violations_report,group_level_analytics_dashboard,incident_management,inline_codequality,insights,issuable_health_status,issues_completed_analytics,jira_vulnerabilities_integration,jira_issue_association_enforcement,kubernetes_cluster_vulnerabilities,license_scanning,okrs,personal_access_token_expiration_policy,pre_receive_secret_detection,product_analytics,project_quality_summary,project_level_analytics_dashboard,prometheus_alerts,quality_management,related_epics,release_evidence_test_artifacts,report_approver_rules,required_ci_templates,requirements,runner_maintenance_note,runner_performance_insights,runner_performance_insights_for_namespace,runner_upgrade_management,runner_upgrade_management_for_namespace,sast,sast_advanced,sast_iac,sast_custom_rulesets,sast_fp_reduction,secret_detection,security_configuration_in_ui,security_dashboard,security_on_demand_scans,security_orchestration_policies,security_training,ssh_key_expiration_policy,summarize_mr_changes,summarize_my_mr_code_review,summarize_new_merge_request,summarize_comments,stale_runner_cleanup_for_namespace,status_page,suggested_reviewers,subepics,observability,troubleshoot_job,unique_project_download_limit,vulnerability_finding_signatures,container_scanning_for_registry,coverage_fuzzing,devops_adoption,group_level_devops_adoption,instance_level_devops_adoption
GITLAB_USER_EMAIL=r.boman@uliege.be
GITLAB_USER_ID=41
GITLAB_USER_LOGIN=rboman
GITLAB_USER_NAME=Boman Romain
GIT_LFS_SKIP_SMUDGE=1
GIT_STRATEGY=clone
GIT_SUBMODULE_STRATEGY=recursive
HOME=/root
HOSTNAME=runner-9gmcjbcq-project-2918-concurrent-1
INCLUDE=/opt/gmsh/include:/opt/mumps-4.10.0/include:
LD_LIBRARY_PATH=/opt/intel/oneapi/tbb/2021.13/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mkl/2024.2/lib:
LIB=/opt/gmsh/lib:/opt/mumps-4.10.0/lib:
LIBRARY_PATH=/opt/intel/oneapi/tbb/2021.13/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mkl/2024.2/lib/:
MKLROOT=/opt/intel/oneapi/mkl/2024.2
MKL_THREADING_LAYER=GNU
NLSPATH=/opt/intel/oneapi/mkl/2024.2/share/locale/%l_%t/%N:
OLDPWD=/
PATH=/opt/intel/oneapi/mkl/2024.2/bin/:/opt/gmsh/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
PKG_CONFIG_PATH=/opt/intel/oneapi/tbb/2021.13/env/../lib/pkgconfig:/opt/intel/oneapi/mkl/2024.2/lib/pkgconfig:
PWD=/builds/am-dept/amfe-solvers
PYTHONPATH=/opt/gmsh/bin:
RUNNER_TEMP_PROJECT_DIR=/builds/am-dept/amfe-solvers.tmp
SHLVL=1
TBBROOT=/opt/intel/oneapi/tbb/2021.13/env/..
_=/usr/bin/printenv
[32;1m$ cd build[0;m
[32;1m$ ctest --output-on-failure -j 8[0;m
Test project /builds/am-dept/amfe-solvers/build
Start 1: fwk/tests/timers.py
Start 2: tbox/tests/basicops.py
Start 3: tbox/tests/fem/elem1s.py
Start 4: tbox/tests/gmshio.py
Start 5: tbox/tests/meshDeformation.py
Start 6: tbox/tests/meshDeformation3.py
Start 7: tbox/tests/mpi/helloworld.py
Start 8: tbox/tests/stdvec.py
1/34 Test #8: tbox/tests/stdvec.py ................... Passed 0.93 sec
Start 9: tboxVtk/tests/vtkio.py
2/34 Test #7: tbox/tests/mpi/helloworld.py ........... Passed 0.95 sec
Start 10: heat/tests/basics/anisotropy.py
3/34 Test #2: tbox/tests/basicops.py ................. Passed 1.04 sec
Start 11: heat/tests/basics/dirichletx.py
4/34 Test #4: tbox/tests/gmshio.py ................... Passed 1.04 sec
Start 12: heat/tests/basics/dirichletx_stru.py
5/34 Test #5: tbox/tests/meshDeformation.py .......... Passed 1.05 sec
Start 13: heat/tests/basics/dirichlety.py
6/34 Test #3: tbox/tests/fem/elem1s.py ............... Passed 1.09 sec
Start 14: heat/tests/basics/mat2hole.py
7/34 Test #6: tbox/tests/meshDeformation3.py ......... Passed 1.26 sec
Start 15: heat/tests/basics/source.py
8/34 Test #9: tboxVtk/tests/vtkio.py ................. Passed 0.81 sec
Start 16: heat/tests/directors/material.py
9/34 Test #10: heat/tests/basics/anisotropy.py ........ Passed 1.05 sec
Start 17: heat/tests/directors/neumann.py
10/34 Test #12: heat/tests/basics/dirichletx_stru.py ...***Exception: SegFault 1.08 sec
[findbins] looking for linux/mingw libs
[findbins] loading /builds/am-dept/amfe-solvers/build/bin/fwkw.py
* OMP environment:
* MKL environment:
MKL_THREADING_LAYER = GNU
MKL_INTERFACE_LAYER = LP64
MKL_NUM_THREADS = 1
MKL_DOMAIN_NUM_THREADS = MKL_DOMAIN_ALL=1
MKL_DYNAMIC = FALSE
* KMP environment:
dir1= /builds/am-dept/amfe-solvers/ext/amfe/
testname= /builds/am-dept/amfe-solvers/heat/tests/basics/dirichletx_stru.py
creating workspace/heat_tests_basics_dirichletx_stru
[run.py] __file__ /builds/am-dept/amfe-solvers/heat/tests/basics/dirichletx_stru.py
--------------------------------------------------------------------------------
[1;34mPyStarting...[0m
starting test /builds/am-dept/amfe-solvers/heat/tests/basics/dirichletx_stru.py
time: Fri Sep 6 07:16:24 2024
hostname: runner-9gmcjbcq-project-2918-concurrent-1
[<class 'tbox.gmsh.MeshLoader'>] processing /builds/am-dept/amfe-solvers/heat/models/rect_stru.geo
[<class 'tbox.gmsh.MeshLoader'>] running gmsh on "/builds/am-dept/amfe-solvers/heat/models/rect_stru.geo"...
[gmsh-out] b"Info : Running 'gmsh -3 -format msh2 -setnumber Lx 10.0 -setnumber Ly 10.0 -setnumber Nx 10 -setnumber Ny 10 -o rect_stru.msh /builds/am-dept/amfe-solvers/heat/models/rect_stru.geo' [Gmsh 4.13.1, 1 node, max. 1 thread]"
[gmsh-out] b'Info : Started on Fri Sep 6 07:16:24 2024'
[gmsh-out] b"Info : Reading '/builds/am-dept/amfe-solvers/heat/models/rect_stru.geo'..."
[gmsh-out] b"Info : Done reading '/builds/am-dept/amfe-solvers/heat/models/rect_stru.geo'"
[gmsh-out] b'Info : Meshing 1D...'
[gmsh-out] b'Info : [ 0%] Meshing curve 1 (Line)'
[gmsh-out] b'Info : [ 30%] Meshing curve 2 (Line)'
[gmsh-out] b'Info : [ 60%] Meshing curve 3 (Line)'
[gmsh-out] b'Info : [ 80%] Meshing curve 4 (Line)'
[gmsh-out] b'Info : Done meshing 1D (Wall 0.000139274s, CPU 0.000893s)'
[gmsh-out] b'Info : Meshing 2D...'
[gmsh-out] b'Info : Meshing surface 1 (Transfinite)'
[gmsh-out] b'Info : Done meshing 2D (Wall 5.0596e-05s, CPU 0.000323s)'
[gmsh-out] b'Info : Meshing 3D...'
[gmsh-out] b'Info : Done meshing 3D (Wall 2.72109e-05s, CPU 0.000174s)'
[gmsh-out] b'Info : 121 nodes 244 elements'
[gmsh-out] b"Info : Writing 'rect_stru.msh'..."
[gmsh-out] b"Info : Done writing 'rect_stru.msh'"
[gmsh-out] b'Info : Stopped on Fri Sep 6 07:16:24 2024 (From start: Wall 0.00200046s, CPU 0.035792s)'
reading file rect_stru.msh...
setting mesh name to "rect_stru"
reading .msh format 2.2
counted 121 nodes
counted 244 elements
done
~GmshImport()
tag=Tag #9 (2D) named "S1" (200 elements) TRI3:200
* it #0 |r|2 = 4.359e-05 |r|inf = 1.000e-05
* it #1 |r|2 = 1.632e-19 |r|inf = 6.099e-20
writing file: rect_stru.pos... done
---CPU statistics ---
user real kernel
BCs 0.0 0.0 0.0
Kass 0.0 0.0 0.0
post 0.0 0.0 0.0
prepro 0.0 0.0 0.0
residual 0.0 0.0 0.0
solve 0.0 0.0 0.0
total 0.0 0.0 0.0
---------------------
~GmshExport()
~Extractor()
[CTest] mean(Tbottom) = 4.000000 (expected 4.000000 +/- 0.0%)
rel diff = 1.899592e-13 <= 1.000000e-09 [ok]
[CTest] max(Tbottom) = 5.000000 (expected 5.000000 +/- 0.0%)
rel diff = 0.000000e+00 <= 1.000000e-10 [ok]
[CTest] min(Tbottom) = 3.000000 (expected 3.000000 +/- 0.0%)
rel diff = 0.000000e+00 <= 1.000000e-10 [ok]
[1;32m** All tests are OK![0m
~Solver()
~Problem()
~Dirichlet()
~Dirichlet()
~Medium()
~MshData()
[runner-9gmcjbcq-project-2918-concurrent-1:00258] *** Process received signal ***
[runner-9gmcjbcq-project-2918-concurrent-1:00258] Signal: Segmentation fault (11)
[runner-9gmcjbcq-project-2918-concurrent-1:00258] Signal code: Address not mapped (1)
[runner-9gmcjbcq-project-2918-concurrent-1:00258] Failing at address: 0x7fc85fc0d5da
Start 18: heat/tests/directors/source.py
11/34 Test #13: heat/tests/basics/dirichlety.py ........ Passed 1.11 sec
Start 19: heat/tests/fe2/Lmpi.py
12/34 Test #11: heat/tests/basics/dirichletx.py ........***Exception: SegFault 1.17 sec
[findbins] looking for linux/mingw libs
[findbins] loading /builds/am-dept/amfe-solvers/build/bin/fwkw.py
* OMP environment:
* MKL environment:
MKL_THREADING_LAYER = GNU
MKL_INTERFACE_LAYER = LP64
MKL_NUM_THREADS = 1
MKL_DOMAIN_NUM_THREADS = MKL_DOMAIN_ALL=1
MKL_DYNAMIC = FALSE
* KMP environment:
dir1= /builds/am-dept/amfe-solvers/ext/amfe/
testname= /builds/am-dept/amfe-solvers/heat/tests/basics/dirichletx.py
creating workspace/heat_tests_basics_dirichletx
[run.py] __file__ /builds/am-dept/amfe-solvers/heat/tests/basics/dirichletx.py
--------------------------------------------------------------------------------
[1;34mPyStarting...[0m
starting test /builds/am-dept/amfe-solvers/heat/tests/basics/dirichletx.py
time: Fri Sep 6 07:16:24 2024
hostname: runner-9gmcjbcq-project-2918-concurrent-1
[<class 'tbox.gmsh.MeshLoader'>] processing /builds/am-dept/amfe-solvers/heat/models/rect.geo
[<class 'tbox.gmsh.MeshLoader'>] running gmsh on "/builds/am-dept/amfe-solvers/heat/models/rect.geo"...
[gmsh-out] b"Info : Running 'gmsh -3 -format msh2 -setnumber Lx 10.0 -setnumber Ly 10.0 -setnumber lc 0.5 -o rect.msh /builds/am-dept/amfe-solvers/heat/models/rect.geo' [Gmsh 4.13.1, 1 node, max. 1 thread]"
[gmsh-out] b'Info : Started on Fri Sep 6 07:16:24 2024'
[gmsh-out] b"Info : Reading '/builds/am-dept/amfe-solvers/heat/models/rect.geo'..."
[gmsh-out] b"Info : Done reading '/builds/am-dept/amfe-solvers/heat/models/rect.geo'"
[gmsh-out] b'Info : Meshing 1D...'
[gmsh-out] b'Info : [ 0%] Meshing curve 1 (Line)'
[gmsh-out] b'Info : [ 30%] Meshing curve 2 (Line)'
[gmsh-out] b'Info : [ 60%] Meshing curve 3 (Line)'
[gmsh-out] b'Info : [ 80%] Meshing curve 4 (Line)'
[gmsh-out] b'Info : Done meshing 1D (Wall 0.000262538s, CPU 0.000526s)'
[gmsh-out] b'Info : Meshing 2D...'
[gmsh-out] b'Info : Meshing surface 1 (Plane, Frontal-Delaunay)'
[gmsh-out] b'Info : Done meshing 2D (Wall 0.0899004s, CPU 0.025475s)'
[gmsh-out] b'Info : Meshing 3D...'
[gmsh-out] b'Info : Done meshing 3D (Wall 5.42731e-05s, CPU 0.000352s)'
[gmsh-out] b'Info : 510 nodes 1022 elements'
[gmsh-out] b"Info : Writing 'rect.msh'..."
[gmsh-out] b"Info : Done writing 'rect.msh'"
[gmsh-out] b'Info : Stopped on Fri Sep 6 07:16:25 2024 (From start: Wall 0.0942065s, CPU 0.041242s)'
reading file rect.msh...
setting mesh name to "rect"
reading .msh format 2.2
counted 510 nodes
counted 1022 elements
done
~GmshImport()
tag=Tag #9 (2D) named "S1" (938 elements) TRI3:938
* it #0 |r|2 = 7.577e-05 |r|inf = 1.513e-05
* it #1 |r|2 = 3.568e-19 |r|inf = 5.421e-20
writing file: rect.pos... done
---CPU statistics ---
user real kernel
BCs 0.0 0.0 0.0
Kass 0.0 0.0 0.0
post 0.0 0.0 0.0
prepro 0.0 0.0 0.0
residual 0.0 0.0 0.0
solve 0.0 0.0 0.0
total 0.0 0.0 0.0
---------------------
~GmshExport()
~Extractor()
[CTest] mean(Tbottom) = 4.000000 (expected 4.000000 +/- 0.0%)
rel diff = 1.973977e-13 <= 1.000000e-09 [ok]
[CTest] max(Tbottom) = 5.000000 (expected 5.000000 +/- 0.0%)
rel diff = 0.000000e+00 <= 1.000000e-10 [ok]
[CTest] min(Tbottom) = 3.000000 (expected 3.000000 +/- 0.0%)
rel diff = 0.000000e+00 <= 1.000000e-10 [ok]
[1;32m** All tests are OK![0m
~Solver()
~Problem()
~Dirichlet()
~Dirichlet()
~Medium()
~MshData()
[runner-9gmcjbcq-project-2918-concurrent-1:00257] *** Process received signal ***
[runner-9gmcjbcq-project-2918-concurrent-1:00257] Signal: Segmentation fault (11)
[runner-9gmcjbcq-project-2918-concurrent-1:00257] Signal code: Address not mapped (1)
[runner-9gmcjbcq-project-2918-concurrent-1:00257] Failing at address: 0x7f319440d5da
Start 20: heat/tests/fe2/heat_mpi.py
13/34 Test #15: heat/tests/basics/source.py ............***Exception: SegFault 0.94 sec
[findbins] looking for linux/mingw libs
[findbins] loading /builds/am-dept/amfe-solvers/build/bin/fwkw.py
* OMP environment:
* MKL environment:
MKL_THREADING_LAYER = GNU
MKL_INTERFACE_LAYER = LP64
MKL_NUM_THREADS = 1
MKL_DOMAIN_NUM_THREADS = MKL_DOMAIN_ALL=1
MKL_DYNAMIC = FALSE
* KMP environment:
dir1= /builds/am-dept/amfe-solvers/ext/amfe/
testname= /builds/am-dept/amfe-solvers/heat/tests/basics/source.py
creating workspace/heat_tests_basics_source
[run.py] __file__ /builds/am-dept/amfe-solvers/heat/tests/basics/source.py
--------------------------------------------------------------------------------
[1;34mPyStarting...[0m
starting test /builds/am-dept/amfe-solvers/heat/tests/basics/source.py
time: Fri Sep 6 07:16:24 2024
hostname: runner-9gmcjbcq-project-2918-concurrent-1
[<class 'tbox.gmsh.MeshLoader'>] processing /builds/am-dept/amfe-solvers/heat/models/rect.geo
[<class 'tbox.gmsh.MeshLoader'>] running gmsh on "/builds/am-dept/amfe-solvers/heat/models/rect.geo"...
[gmsh-out] b"Info : Running 'gmsh -3 -format msh2 -setnumber Lx 10.0 -setnumber Ly 10.0 -setnumber lc 0.5 -o rect.msh /builds/am-dept/amfe-solvers/heat/models/rect.geo' [Gmsh 4.13.1, 1 node, max. 1 thread]"
[gmsh-out] b'Info : Started on Fri Sep 6 07:16:24 2024'
[gmsh-out] b"Info : Reading '/builds/am-dept/amfe-solvers/heat/models/rect.geo'..."
[gmsh-out] b"Info : Done reading '/builds/am-dept/amfe-solvers/heat/models/rect.geo'"
[gmsh-out] b'Info : Meshing 1D...'
[gmsh-out] b'Info : [ 0%] Meshing curve 1 (Line)'
[gmsh-out] b'Info : [ 30%] Meshing curve 2 (Line)'
[gmsh-out] b'Info : [ 60%] Meshing curve 3 (Line)'
[gmsh-out] b'Info : [ 80%] Meshing curve 4 (Line)'
[gmsh-out] b'Info : Done meshing 1D (Wall 0.000225258s, CPU 0s)'
[gmsh-out] b'Info : Meshing 2D...'
[gmsh-out] b'Info : Meshing surface 1 (Plane, Frontal-Delaunay)'
[gmsh-out] b'Info : Done meshing 2D (Wall 0.00909797s, CPU 0.021546s)'
[gmsh-out] b'Info : Meshing 3D...'
[gmsh-out] b'Info : Done meshing 3D (Wall 3.23521e-05s, CPU 8.3e-05s)'
[gmsh-out] b'Info : 510 nodes 1022 elements'
[gmsh-out] b"Info : Writing 'rect.msh'..."
[gmsh-out] b"Info : Done writing 'rect.msh'"
[gmsh-out] b'Info : Stopped on Fri Sep 6 07:16:24 2024 (From start: Wall 0.0125807s, CPU 0.027481s)'
reading file rect.msh...
setting mesh name to "rect"
reading .msh format 2.2
counted 510 nodes
counted 1022 elements
done
~GmshImport()
tag=Tag #9 (2D) named "S1" (938 elements) TRI3:938
* it #0 |r|2 = 7.583e-05 |r|inf = 1.494e-05
* it #1 |r|2 = 4.134e-19 |r|inf = 6.056e-20
writing file: rect.pos... done
---CPU statistics ---
user real kernel
BCs 0.0 0.0 0.0
Kass 0.0 0.0 0.0
post 0.0 0.0 0.0
prepro 0.0 0.0 0.0
residual 0.0 0.0 0.0
solve 0.0 0.1 0.0
total 0.0 0.1 0.0
---------------------
~GmshExport()
~Extractor()
[CTest] mean(Tbottom) = 4.791637 (expected 4.791563 +/- 0.0%)
rel diff = 1.550621e-05 <= 1.000000e-04 [ok]
[CTest] max(Tbottom) = 5.449733 (expected 5.449610 +/- 0.0%)
rel diff = 2.252990e-05 <= 1.000000e-04 [ok]
[CTest] min(Tbottom) = 3.000000 (expected 3.000000 +/- 0.0%)
rel diff = 0.000000e+00 <= 1.000000e-10 [ok]
[1;32m** All tests are OK![0m
~Solver()
~Problem()
~Source()
~Dirichlet()
~Dirichlet()
~Medium()
~MshData()
[runner-9gmcjbcq-project-2918-concurrent-1:00305] *** Process received signal ***
[runner-9gmcjbcq-project-2918-concurrent-1:00305] Signal: Segmentation fault (11)
[runner-9gmcjbcq-project-2918-concurrent-1:00305] Signal code: Address not mapped (1)
[runner-9gmcjbcq-project-2918-concurrent-1:00305] Failing at address: 0x7f890e00d5da
Start 21: heat/tests/fe2/micro.py
14/34 Test #14: heat/tests/basics/mat2hole.py ..........***Exception: SegFault 1.14 sec
[findbins] looking for linux/mingw libs
[findbins] loading /builds/am-dept/amfe-solvers/build/bin/fwkw.py
* OMP environment:
* MKL environment:
MKL_THREADING_LAYER = GNU
MKL_INTERFACE_LAYER = LP64
MKL_NUM_THREADS = 1
MKL_DOMAIN_NUM_THREADS = MKL_DOMAIN_ALL=1
MKL_DYNAMIC = FALSE
* KMP environment:
dir1= /builds/am-dept/amfe-solvers/ext/amfe/
testname= /builds/am-dept/amfe-solvers/heat/tests/basics/mat2hole.py
creating workspace/heat_tests_basics_mat2hole
[run.py] __file__ /builds/am-dept/amfe-solvers/heat/tests/basics/mat2hole.py
--------------------------------------------------------------------------------
[1;34mPyStarting...[0m
starting test /builds/am-dept/amfe-solvers/heat/tests/basics/mat2hole.py
time: Fri Sep 6 07:16:24 2024
hostname: runner-9gmcjbcq-project-2918-concurrent-1
[<class 'tbox.gmsh.MeshLoader'>] processing /builds/am-dept/amfe-solvers/heat/tests/basics/mat2hole.geo
[<class 'tbox.gmsh.MeshLoader'>] running gmsh on "/builds/am-dept/amfe-solvers/heat/tests/basics/mat2hole.geo"...
[gmsh-out] b"Info : Running 'gmsh -3 -format msh2 -setnumber iR 1.0 -o mat2hole.msh /builds/am-dept/amfe-solvers/heat/tests/basics/mat2hole.geo' [Gmsh 4.13.1, 1 node, max. 1 thread]"
[gmsh-out] b'Info : Started on Fri Sep 6 07:16:24 2024'
[gmsh-out] b"Info : Reading '/builds/am-dept/amfe-solvers/heat/tests/basics/mat2hole.geo'..."
[gmsh-out] b"Info : Done reading '/builds/am-dept/amfe-solvers/heat/tests/basics/mat2hole.geo'"
[gmsh-out] b'Info : Meshing 1D...'
[gmsh-out] b'Info : [ 0%] Meshing curve 1 (Line)'
[gmsh-out] b'Info : [ 20%] Meshing curve 2 (Line)'
[gmsh-out] b'Info : [ 30%] Meshing curve 3 (Line)'
[gmsh-out] b'Info : [ 40%] Meshing curve 4 (Line)'
[gmsh-out] b'Info : [ 60%] Meshing curve 10 (Circle)'
[gmsh-out] b'Info : [ 70%] Meshing curve 11 (Circle)'
[gmsh-out] b'Info : [ 80%] Meshing curve 20 (Circle)'
[gmsh-out] b'Info : [ 90%] Meshing curve 21 (Circle)'
[gmsh-out] b'Info : Done meshing 1D (Wall 0.000638651s, CPU 0.0035s)'
[gmsh-out] b'Info : Meshing 2D...'
[gmsh-out] b'Info : [ 0%] Meshing surface 1 (Plane, Frontal-Delaunay)'
[gmsh-out] b'Info : [ 60%] Meshing surface 11 (Plane, Frontal-Delaunay)'
[gmsh-out] b'Info : Done meshing 2D (Wall 0.100163s, CPU 0.054608s)'
[gmsh-out] b'Info : Meshing 3D...'
[gmsh-out] b'Info : Done meshing 3D (Wall 4.174e-05s, CPU 0.000141s)'
[gmsh-out] b'Info : 1077 nodes 2186 elements'
[gmsh-out] b"Info : Writing 'mat2hole.msh'..."
[gmsh-out] b"Info : Done writing 'mat2hole.msh'"
[gmsh-out] b'Info : Stopped on Fri Sep 6 07:16:25 2024 (From start: Wall 0.106229s, CPU 0.077479s)'
reading file mat2hole.msh...
setting mesh name to "mat2hole"
reading .msh format 2.2
counted 1075 nodes
counted 2090 elements
done
~GmshImport()
tag=Tag #9 (2D) named "Matrix" (1854 elements) TRI3:1854
tag=Tag #10 (2D) named "Inclusion" (144 elements) TRI3:144
* it #0 |r|2 = 8.037e-05 |r|inf = 1.514e-05
* it #1 |r|2 = 4.922e-09 |r|inf = 1.962e-09
writing file: mat2hole.pos... done
---CPU statistics ---
user real kernel
BCs 0.0 0.0 0.0
Kass 0.0 0.0 0.0
post 0.0 0.0 0.0
prepro 0.0 0.0 0.0
residual 0.0 0.0 0.0
solve 0.0 0.0 0.0
total 0.0 0.0 0.0
---------------------
~Extractor()
[CTest] mean(Ttop) = 6.639817 (expected 6.639428 +/- 0.1%)
rel diff = 5.854484e-05 <= 1.000000e-03 [ok]
[CTest] max(Ttop) = 8.346070 (expected 8.344513 +/- 0.1%)
rel diff = 1.866045e-04 <= 1.000000e-03 [ok]
[CTest] min(Ttop) = 3.000000 (expected 3.000000 +/- 0.0%)
rel diff = 0.000000e+00 <= 1.000000e-10 [ok]
[1;32m** All tests are OK![0m
~GmshExport()
~Solver()
~Problem()
~Source()
~Dirichlet()
~Dirichlet()
~Medium()
~Medium()
~MshData()
[runner-9gmcjbcq-project-2918-concurrent-1:00294] *** Process received signal ***
[runner-9gmcjbcq-project-2918-concurrent-1:00294] Signal: Segmentation fault (11)
[runner-9gmcjbcq-project-2918-concurrent-1:00294] Signal code: Address not mapped (1)
[runner-9gmcjbcq-project-2918-concurrent-1:00294] Failing at address: 0x7f722a80d5da
Start 22: heat/tests/nonlinear/mat2vark.py
15/34 Test #1: fwk/tests/timers.py .................... Passed 2.29 sec
Start 23: heat/tests/periodic/honeycomb.py
16/34 Test #17: heat/tests/directors/neumann.py ........***Exception: SegFault 0.94 sec
[findbins] looking for linux/mingw libs
[findbins] loading /builds/am-dept/amfe-solvers/build/bin/fwkw.py
* OMP environment:
* MKL environment:
MKL_THREADING_LAYER = GNU
MKL_INTERFACE_LAYER = LP64
MKL_NUM_THREADS = 1
MKL_DOMAIN_NUM_THREADS = MKL_DOMAIN_ALL=1
MKL_DYNAMIC = FALSE
* KMP environment:
dir1= /builds/am-dept/amfe-solvers/ext/amfe/
testname= /builds/am-dept/amfe-solvers/heat/tests/directors/neumann.py
creating workspace/heat_tests_directors_neumann
[run.py] __file__ /builds/am-dept/amfe-solvers/heat/tests/directors/neumann.py
--------------------------------------------------------------------------------
[1;34mPyStarting...[0m
starting test /builds/am-dept/amfe-solvers/heat/tests/directors/neumann.py
time: Fri Sep 6 07:16:25 2024
hostname: runner-9gmcjbcq-project-2918-concurrent-1
[<class 'tbox.gmsh.MeshLoader'>] processing /builds/am-dept/amfe-solvers/heat/tests/directors/../../models/rect_stru.geo
[<class 'tbox.gmsh.MeshLoader'>] running gmsh on "/builds/am-dept/amfe-solvers/heat/tests/directors/../../models/rect_stru.geo"...
[gmsh-out] b"Info : Running 'gmsh -3 -format msh2 -setnumber Lx 1 -setnumber Ly 1 -setnumber Nx 50 -setnumber Ny 50 -o rect_stru.msh /builds/am-dept/amfe-solvers/heat/tests/directors/../../models/rect_stru.geo' [Gmsh 4.13.1, 1 node, max. 1 thread]"
[gmsh-out] b'Info : Started on Fri Sep 6 07:16:25 2024'
[gmsh-out] b"Info : Reading '/builds/am-dept/amfe-solvers/heat/tests/directors/../../models/rect_stru.geo'..."
[gmsh-out] b"Info : Done reading '/builds/am-dept/amfe-solvers/heat/tests/directors/../../models/rect_stru.geo'"
[gmsh-out] b'Info : Meshing 1D...'
[gmsh-out] b'Info : [ 0%] Meshing curve 1 (Line)'
[gmsh-out] b'Info : [ 30%] Meshing curve 2 (Line)'
[gmsh-out] b'Info : [ 60%] Meshing curve 3 (Line)'
[gmsh-out] b'Info : [ 80%] Meshing curve 4 (Line)'
[gmsh-out] b'Info : Done meshing 1D (Wall 0.000172227s, CPU 0.000849s)'
[gmsh-out] b'Info : Meshing 2D...'
[gmsh-out] b'Info : Meshing surface 1 (Transfinite)'
[gmsh-out] b'Info : Done meshing 2D (Wall 0.000482555s, CPU 0.002369s)'
[gmsh-out] b'Info : Meshing 3D...'
[gmsh-out] b'Info : Done meshing 3D (Wall 2.5548e-05s, CPU 0.000126s)'
[gmsh-out] b'Info : 2601 nodes 5204 elements'
[gmsh-out] b"Info : Writing 'rect_stru.msh'..."
[gmsh-out] b"Info : Done writing 'rect_stru.msh'"
[gmsh-out] b'Info : Stopped on Fri Sep 6 07:16:25 2024 (From start: Wall 0.0111334s, CPU 0.072706s)'
reading file rect_stru.msh...
setting mesh name to "rect_stru"
reading .msh format 2.2
counted 2601 nodes
counted 5204 elements
done
~GmshImport()
tag=Tag #9 (2D) named "S1" (5000 elements) TRI3:5000
* it #0 |r|2 = 1.412e+01 |r|inf = 1.993e+00
* it #1 |r|2 = 5.951e-14 |r|inf = 8.882e-15
writing file: rect_stru.pos... done
---CPU statistics ---
user real kernel
BCs 0.0 0.0 0.0
Kass 0.0 0.0 0.0
post 0.0 0.0 0.0
prepro 0.0 0.0 0.0
residual 0.0 0.0 0.0
solve 0.0 0.1 0.0
total 0.0 0.1 0.0
---------------------
~Extractor()
[CTest] mean(Tleft) = -0.000000 (expected 0.000000 +/- 0.000001)
abs diff = 4.660566e-11 <= 1.000000e-06 [ok]
[CTest] max(Tleft) = 15.782894 (expected 15.782894 +/- 0.1%)
rel diff = 2.962359e-08 <= 1.000000e-03 [ok]
[CTest] max+min(Tleft) = 0.000000 (expected 0.000000 +/- 0.000001)
abs diff = 3.771206e-12 <= 1.000000e-06 [ok]
[1;32m** All tests are OK![0m
~GmshExport()
~Solver()
~Problem()
~Boundary()
~Boundary()
~Dirichlet()
~Dirichlet()
~Medium()
~MshData()
[runner-9gmcjbcq-project-2918-concurrent-1:00654] *** Process received signal ***
[runner-9gmcjbcq-project-2918-concurrent-1:00654] Signal: Segmentation fault (11)
[runner-9gmcjbcq-project-2918-concurrent-1:00654] Signal code: Address not mapped (1)
[runner-9gmcjbcq-project-2918-concurrent-1:00654] Failing at address: 0x7f7a61e0d5da
Start 24: heat/tests/periodic/lincomb.py
17/34 Test #21: heat/tests/fe2/micro.py ................***Exception: SegFault 1.01 sec
[findbins] looking for linux/mingw libs
[findbins] loading /builds/am-dept/amfe-solvers/build/bin/fwkw.py
* OMP environment:
* MKL environment:
MKL_THREADING_LAYER = GNU
MKL_INTERFACE_LAYER = LP64
MKL_NUM_THREADS = 1
MKL_DOMAIN_NUM_THREADS = MKL_DOMAIN_ALL=1
MKL_DYNAMIC = FALSE
* KMP environment:
dir1= /builds/am-dept/amfe-solvers/ext/amfe/
testname= /builds/am-dept/amfe-solvers/heat/tests/fe2/micro.py
creating workspace/heat_tests_fe2_micro
[run.py] __file__ /builds/am-dept/amfe-solvers/heat/tests/fe2/micro.py
--------------------------------------------------------------------------------
[1;34mPyStarting...[0m
starting test /builds/am-dept/amfe-solvers/heat/tests/fe2/micro.py
time: Fri Sep 6 07:16:25 2024
hostname: runner-9gmcjbcq-project-2918-concurrent-1
[<class 'tbox.gmsh.MeshLoader'>] processing /builds/am-dept/amfe-solvers/heat/tests/fe2/micro.geo
[<class 'tbox.gmsh.MeshLoader'>] running gmsh on "/builds/am-dept/amfe-solvers/heat/tests/fe2/micro.geo"...
[gmsh-out] b"Info : Running 'gmsh -3 -format msh2 -o micro.msh /builds/am-dept/amfe-solvers/heat/tests/fe2/micro.geo' [Gmsh 4.13.1, 1 node, max. 1 thread]"
[gmsh-out] b'Info : Started on Fri Sep 6 07:16:26 2024'
[gmsh-out] b"Info : Reading '/builds/am-dept/amfe-solvers/heat/tests/fe2/micro.geo'..."
[gmsh-out] b"Info : Done reading '/builds/am-dept/amfe-solvers/heat/tests/fe2/micro.geo'"
[gmsh-out] b'Info : Meshing 1D...'
[gmsh-out] b'Info : [ 0%] Meshing curve 1 (Line)'
[gmsh-out] b'Info : [ 20%] Meshing curve 2 (Line)'
[gmsh-out] b'Info : [ 30%] Meshing curve 3 (Line)'
[gmsh-out] b'Info : [ 50%] Meshing curve 4 (Line)'
[gmsh-out] b'Info : [ 60%] Meshing curve 11 (Line)'
[gmsh-out] b'Info : [ 80%] Meshing curve 12 (Line)'
[gmsh-out] b'Info : [ 90%] Meshing curve 13 (Line)'
[gmsh-out] b'Info : Done meshing 1D (Wall 0.000409977s, CPU 0.00179s)'
[gmsh-out] b'Info : Meshing 2D...'
[gmsh-out] b'Info : [ 0%] Meshing surface 1 (Plane, Delaunay)'
[gmsh-out] b'Info : [ 60%] Meshing surface 11 (Plane, Delaunay)'
[gmsh-out] b'Info : Done meshing 2D (Wall 0.0027987s, CPU 0.010821s)'
[gmsh-out] b'Info : Meshing 3D...'
[gmsh-out] b'Info : Done meshing 3D (Wall 2.5949e-05s, CPU 9.1e-05s)'
[gmsh-out] b'Info : 156 nodes 340 elements'
[gmsh-out] b"Info : Writing 'micro.msh'..."
[gmsh-out] b"Info : Done writing 'micro.msh'"
[gmsh-out] b'Info : Stopped on Fri Sep 6 07:16:26 2024 (From start: Wall 0.00528235s, CPU 0.035864s)'
reading file micro.msh...
setting mesh name to "micro"
reading .msh format 2.2
counted 155 nodes
counted 312 elements
done
~GmshImport()
tag=Tag #9 (2D) named "Matrix" (204 elements) TRI3:204
tag=Tag #10 (2D) named "Inclusion" (64 elements) TRI3:64
* it #0 |r|2 = 4.899e-03 |r|inf = 2.000e-03
* it #1 |r|2 = 2.587e-13 |r|inf = 1.137e-13
writing file: micro.pos... done
---CPU statistics ---
user real kernel
BCs 0.0 0.0 0.0
Kass 0.0 0.0 0.0
post 0.0 0.0 0.0
prepro 0.0 0.0 0.0
residual 0.0 0.0 0.0
solve 0.0 0.0 0.0
total 0.0 0.0 0.0
---------------------
[CTest] mean flux X = -2.278200 (expected -2.278200 +/- 0.0%)
rel diff = 1.122651e-07 <= 1.000000e-04 [ok]
[CTest] mean flux Y = -2.278258 (expected -2.278258 +/- 0.0%)
rel diff = 1.389375e-07 <= 1.000000e-04 [ok]
[1;32m** All tests are OK![0m
~GmshExport()
~Solver()
[runner-9gmcjbcq-project-2918-concurrent-1:00760] *** Process received signal ***
[runner-9gmcjbcq-project-2918-concurrent-1:00760] Signal: Segmentation fault (11)
[runner-9gmcjbcq-project-2918-concurrent-1:00760] Signal code: Address not mapped (1)
[runner-9gmcjbcq-project-2918-concurrent-1:00760] Failing at address: 0x7f4b3520d5da
Start 25: heat/tests/periodic/lincomb_fast.py
18/34 Test #16: heat/tests/directors/material.py .......***Exception: SegFault 1.49 sec
[findbins] looking for linux/mingw libs
[findbins] loading /builds/am-dept/amfe-solvers/build/bin/fwkw.py
* OMP environment:
* MKL environment:
MKL_THREADING_LAYER = GNU
MKL_INTERFACE_LAYER = LP64
MKL_NUM_THREADS = 1
MKL_DOMAIN_NUM_THREADS = MKL_DOMAIN_ALL=1
MKL_DYNAMIC = FALSE
* KMP environment:
dir1= /builds/am-dept/amfe-solvers/ext/amfe/
testname= /builds/am-dept/amfe-solvers/heat/tests/directors/material.py
creating workspace/heat_tests_directors_material
[run.py] __file__ /builds/am-dept/amfe-solvers/heat/tests/directors/material.py
--------------------------------------------------------------------------------
[1;34mPyStarting...[0m
starting test /builds/am-dept/amfe-solvers/heat/tests/directors/material.py
time: Fri Sep 6 07:16:25 2024
hostname: runner-9gmcjbcq-project-2918-concurrent-1
[<class 'tbox.gmsh.MeshLoader'>] processing /builds/am-dept/amfe-solvers/heat/tests/directors/../../models/rect_stru.geo
[<class 'tbox.gmsh.MeshLoader'>] running gmsh on "/builds/am-dept/amfe-solvers/heat/tests/directors/../../models/rect_stru.geo"...
[gmsh-out] b"Info : Running 'gmsh -3 -format msh2 -setnumber Lx 1 -setnumber Ly 1 -setnumber Nx 20 -setnumber Ny 10 -o rect_stru.msh /builds/am-dept/amfe-solvers/heat/tests/directors/../../models/rect_stru.geo' [Gmsh 4.13.1, 1 node, max. 1 thread]"
[gmsh-out] b'Info : Started on Fri Sep 6 07:16:25 2024'
[gmsh-out] b"Info : Reading '/builds/am-dept/amfe-solvers/heat/tests/directors/../../models/rect_stru.geo'..."
[gmsh-out] b"Info : Done reading '/builds/am-dept/amfe-solvers/heat/tests/directors/../../models/rect_stru.geo'"
[gmsh-out] b'Info : Meshing 1D...'
[gmsh-out] b'Info : [ 0%] Meshing curve 1 (Line)'
[gmsh-out] b'Info : [ 30%] Meshing curve 2 (Line)'
[gmsh-out] b'Info : [ 60%] Meshing curve 3 (Line)'
[gmsh-out] b'Info : [ 80%] Meshing curve 4 (Line)'
[gmsh-out] b'Info : Done meshing 1D (Wall 0.000152058s, CPU 0.000915s)'
[gmsh-out] b'Info : Meshing 2D...'
[gmsh-out] b'Info : Meshing surface 1 (Transfinite)'
[gmsh-out] b'Info : Done meshing 2D (Wall 6.74881e-05s, CPU 0.000406s)'
[gmsh-out] b'Info : Meshing 3D...'
[gmsh-out] b'Info : Done meshing 3D (Wall 2.674e-05s, CPU 0.00016s)'
[gmsh-out] b'Info : 231 nodes 464 elements'
[gmsh-out] b"Info : Writing 'rect_stru.msh'..."
[gmsh-out] b"Info : Done writing 'rect_stru.msh'"
[gmsh-out] b'Info : Stopped on Fri Sep 6 07:16:25 2024 (From start: Wall 0.00240919s, CPU 0.038073s)'
reading file rect_stru.msh...
setting mesh name to "rect_stru"
reading .msh format 2.2
counted 231 nodes
counted 464 elements
done
~GmshImport()
tag=Tag #9 (2D) named "S1" (400 elements) TRI3:400
* it #0 |r|2 = 2.228e+02 |r|inf = 6.246e+01
* it #1 |r|2 = 7.320e+01 |r|inf = 1.692e+01
* it #2 |r|2 = 2.316e+01 |r|inf = 8.802e+00
* it #3 |r|2 = 8.834e+00 |r|inf = 4.391e+00
* it #4 |r|2 = 2.354e+00 |r|inf = 1.337e+00
* it #5 |r|2 = 4.874e-01 |r|inf = 2.530e-01
* it #6 |r|2 = 9.756e-02 |r|inf = 3.949e-02
* it #7 |r|2 = 2.217e-02 |r|inf = 1.328e-02
* it #8 |r|2 = 4.819e-03 |r|inf = 2.281e-03
* it #9 |r|2 = 8.977e-04 |r|inf = 4.405e-04
* it #10 |r|2 = 2.198e-04 |r|inf = 1.152e-04
* it #11 |r|2 = 3.908e-05 |r|inf = 1.428e-05
* it #12 |r|2 = 8.469e-06 |r|inf = 4.968e-06
* it #13 |r|2 = 1.818e-06 |r|inf = 8.549e-07
* it #14 |r|2 = 2.996e-07 |r|inf = 1.428e-07
writing file: rect_stru.pos... done
---CPU statistics ---
user real kernel
BCs 0.0 0.0 0.0
Kass 0.3 0.3 0.0
post 0.0 0.0 0.0
prepro 0.0 0.0 0.0
residual 0.0 0.0 0.0
solve 0.0 0.1 0.0
total 0.3 0.5 0.0
---------------------
~Extractor()
[CTest] mean(Ttop) = 4.836834 (expected 5.000000 +/- 5.0%)
rel diff = 3.263329e-02 <= 5.000000e-02 [ok]
[CTest] max(Ttop) = 10.000000 (expected 10.000000 +/- 0.1%)
rel diff = 0.000000e+00 <= 1.000000e-03 [ok]
[CTest] min(Ttop) = -0.036122 (expected 0.000000 +/- 0.100000)
abs diff = 3.612231e-02 <= 1.000000e-01 [ok]
[1;32m** All tests are OK![0m
~GmshExport()
~Solver()
~Problem()
~Dirichlet()
~Dirichlet()
~Medium()
~MshData()
[runner-9gmcjbcq-project-2918-concurrent-1:00444] *** Process received signal ***
[runner-9gmcjbcq-project-2918-concurrent-1:00444] Signal: Segmentation fault (11)
[runner-9gmcjbcq-project-2918-concurrent-1:00444] Signal code: Address not mapped (1)
[runner-9gmcjbcq-project-2918-concurrent-1:00444] Failing at address: 0x7f7b1a60d5da
Start 26: waves/tests/mat1/interf1.py
19/34 Test #18: heat/tests/directors/source.py ......... Passed 1.19 sec
Start 27: waves/tests/mat1/interf2.py
20/34 Test #22: heat/tests/nonlinear/mat2vark.py ....... Passed 1.21 sec
Start 28: waves/tests/mat1/planewave.py
21/34 Test #24: heat/tests/periodic/lincomb.py ......... Passed 1.65 sec
Start 29: waves/tests/mat1/pulse.py
22/34 Test #25: heat/tests/periodic/lincomb_fast.py .... Passed 1.58 sec
Start 30: waves/tests/mat1/sinsrc.py
23/34 Test #26: waves/tests/mat1/interf1.py ............ Passed 1.67 sec
Start 31: waves/tests/mat2/interf1.py
24/34 Test #23: heat/tests/periodic/honeycomb.py .......***Exception: SegFault 2.74 sec
[findbins] looking for linux/mingw libs
[findbins] loading /builds/am-dept/amfe-solvers/build/bin/fwkw.py
* OMP environment:
* MKL environment:
MKL_THREADING_LAYER = GNU
MKL_INTERFACE_LAYER = LP64
MKL_NUM_THREADS = 1
MKL_DOMAIN_NUM_THREADS = MKL_DOMAIN_ALL=1
MKL_DYNAMIC = FALSE
* KMP environment:
dir1= /builds/am-dept/amfe-solvers/ext/amfe/
testname= /builds/am-dept/amfe-solvers/heat/tests/periodic/honeycomb.py
creating workspace/heat_tests_periodic_honeycomb
[run.py] __file__ /builds/am-dept/amfe-solvers/heat/tests/periodic/honeycomb.py
--------------------------------------------------------------------------------
[1;34mPyStarting...[0m
starting test /builds/am-dept/amfe-solvers/heat/tests/periodic/honeycomb.py
time: Fri Sep 6 07:16:25 2024
hostname: runner-9gmcjbcq-project-2918-concurrent-1
[<class 'tbox.gmsh.MeshLoader'>] processing /builds/am-dept/amfe-solvers/heat/tests/periodic/../../models/honeycomb.geo
[<class 'tbox.gmsh.MeshLoader'>] running gmsh on "/builds/am-dept/amfe-solvers/heat/tests/periodic/../../models/honeycomb.geo"...
[gmsh-out] b"Info : Running 'gmsh -3 -format msh2 -setnumber h 10.0 -setnumber k 1.0 -setnumber lc 0.3333333333333333 -o honeycomb.msh /builds/am-dept/amfe-solvers/heat/tests/periodic/../../models/honeycomb.geo' [Gmsh 4.13.1, 1 node, max. 1 thread]"
[gmsh-out] b'Info : Started on Fri Sep 6 07:16:26 2024'
[gmsh-out] b"Info : Reading '/builds/am-dept/amfe-solvers/heat/tests/periodic/../../models/honeycomb.geo'..."
[gmsh-out] b"Info : Done reading '/builds/am-dept/amfe-solvers/heat/tests/periodic/../../models/honeycomb.geo'"
[gmsh-out] b'Info : Meshing 1D...'
[gmsh-out] b'Info : [ 0%] Meshing curve 1 (Line)'
[gmsh-out] b'Info : [ 10%] Meshing curve 2 (Line)'
[gmsh-out] b'Info : [ 10%] Meshing curve 3 (Line)'
[gmsh-out] b'Info : [ 20%] Meshing curve 4 (Line)'
[gmsh-out] b'Info : [ 20%] Meshing curve 5 (Line)'
[gmsh-out] b'Info : [ 20%] Meshing curve 6 (Line)'
[gmsh-out] b'Info : [ 30%] Meshing curve 7 (Line)'
[gmsh-out] b'Info : [ 30%] Meshing curve 8 (Line)'
[gmsh-out] b'Info : [ 40%] Meshing curve 9 (Line)'
[gmsh-out] b'Info : [ 40%] Meshing curve 10 (Line)'
[gmsh-out] b'Info : [ 40%] Meshing curve 11 (Line)'
[gmsh-out] b'Info : [ 50%] Meshing curve 12 (Line)'
[gmsh-out] b'Info : [ 50%] Meshing curve 13 (Line)'
[gmsh-out] b'Info : [ 60%] Meshing curve 14 (Line)'
[gmsh-out] b'Info : [ 60%] Meshing curve 15 (Line)'
[gmsh-out] b'Info : [ 60%] Meshing curve 16 (Line)'
[gmsh-out] b'Info : [ 70%] Meshing curve 17 (Line)'
[gmsh-out] b'Info : [ 70%] Meshing curve 18 (Line)'
[gmsh-out] b'Info : [ 70%] Meshing curve 19 (Line)'
[gmsh-out] b'Info : [ 80%] Meshing curve 20 (Line)'
[gmsh-out] b'Info : [ 80%] Meshing curve 21 (Line)'
[gmsh-out] b'Info : [ 90%] Meshing curve 22 (Line)'
[gmsh-out] b'Info : [ 90%] Meshing curve 23 (Line)'
[gmsh-out] b'Info : [ 90%] Meshing curve 24 (Line)'
[gmsh-out] b'Info : [100%] Meshing curve 25 (Line)'
[gmsh-out] b'Info : [100%] Meshing curve 26 (Line)'
[gmsh-out] b'Info : Done meshing 1D (Wall 0.00145176s, CPU 0.004817s)'
[gmsh-out] b'Info : Meshing 2D...'
[gmsh-out] b'Info : [ 0%] Meshing surface 28 (Plane, Frontal-Delaunay)'
[gmsh-out] b'Info : [ 20%] Meshing surface 30 (Plane, Frontal-Delaunay)'
[gmsh-out] b'Info : [ 40%] Meshing surface 32 (Plane, Frontal-Delaunay)'
[gmsh-out] b'Info : [ 60%] Meshing surface 34 (Plane, Frontal-Delaunay)'
[gmsh-out] b'Info : [ 70%] Meshing surface 36 (Plane, Frontal-Delaunay)'
[gmsh-out] b'Info : [ 90%] Meshing surface 38 (Plane, Frontal-Delaunay)'
[gmsh-out] b'Info : Done meshing 2D (Wall 0.263922s, CPU 0.171445s)'
[gmsh-out] b'Info : Meshing 3D...'
[gmsh-out] b'Info : Done meshing 3D (Wall 3.1049e-05s, CPU 9e-06s)'
[gmsh-out] b'Info : 6315 nodes 13010 elements'
[gmsh-out] b"Info : Writing 'honeycomb.msh'..."
[gmsh-out] b"Info : Done writing 'honeycomb.msh'"
[gmsh-out] b'Info : Stopped on Fri Sep 6 07:16:26 2024 (From start: Wall 0.287571s, CPU 0.21533s)'
reading file honeycomb.msh...
setting mesh name to "honeycomb"
reading .msh format 2.2
counted 6315 nodes
counted 12629 elements
done
~GmshImport()
tag=Tag #5 (2D) named "Hexagon" (10836 elements) TRI3:10836
tag=Tag #6 (2D) named "Borders" (1490 elements) TRI3:1490
* it #0 |r|2 = 3.002e+02 |r|inf = 5.005e+01
* it #1 |r|2 = 5.340e+01 |r|inf = 2.143e+01
* it #2 |r|2 = 2.574e+00 |r|inf = 1.428e+00
* it #3 |r|2 = 1.603e-01 |r|inf = 4.601e-02
* it #4 |r|2 = 1.451e-02 |r|inf = 7.850e-03
* it #5 |r|2 = 1.076e-03 |r|inf = 2.612e-04
* it #6 |r|2 = 9.632e-05 |r|inf = 4.985e-05
* it #7 |r|2 = 7.619e-06 |r|inf = 1.652e-06
* it #8 |r|2 = 6.775e-07 |r|inf = 3.407e-07
writing file: honeycomb.pos... done
---CPU statistics ---
user real kernel
BCs 0.0 0.0 0.0
Kass 0.6 1.2 0.0
post 0.0 0.0 0.0
prepro 0.0 0.0 0.0
residual 0.0 0.0 0.0
solve 0.1 0.2 0.0
total 0.8 1.6 0.0
---------------------
[CTest] mean flux X = -12.623458 (expected -12.623900 +/- 0.0%)
rel diff = 3.501344e-05 <= 1.000000e-04 [ok]
[CTest] mean flux Y = -12.489940 (expected -12.490400 +/- 0.0%)
rel diff = 3.681811e-05 <= 1.000000e-04 [ok]
[1;32m** All tests are OK![0m
~GmshExport()
~Solver()
[runner-9gmcjbcq-project-2918-concurrent-1:00767] *** Process received signal ***
[runner-9gmcjbcq-project-2918-concurrent-1:00767] Signal: Segmentation fault (11)
[runner-9gmcjbcq-project-2918-concurrent-1:00767] Signal code: Address not mapped (1)
[runner-9gmcjbcq-project-2918-concurrent-1:00767] Failing at address: 0x7fd4f8a0d5da
Start 32: waves/tests/mat2/pulse.py
25/34 Test #27: waves/tests/mat1/interf2.py ............***Exception: SegFault 1.75 sec
[findbins] looking for linux/mingw libs
[findbins] loading /builds/am-dept/amfe-solvers/build/bin/fwkw.py
* OMP environment:
* MKL environment:
MKL_THREADING_LAYER = GNU
MKL_INTERFACE_LAYER = LP64
MKL_NUM_THREADS = 1
MKL_DOMAIN_NUM_THREADS = MKL_DOMAIN_ALL=1
MKL_DYNAMIC = FALSE
* KMP environment:
dir1= /builds/am-dept/amfe-solvers/ext/amfe/
testname= /builds/am-dept/amfe-solvers/waves/tests/mat1/interf2.py
creating workspace/waves_tests_mat1_interf2
[run.py] __file__ /builds/am-dept/amfe-solvers/waves/tests/mat1/interf2.py
--------------------------------------------------------------------------------
[1;34mPyStarting...[0m
starting test /builds/am-dept/amfe-solvers/waves/tests/mat1/interf2.py
time: Fri Sep 6 07:16:26 2024
hostname: runner-9gmcjbcq-project-2918-concurrent-1
[<class 'tbox.gmsh.MeshLoader'>] processing /builds/am-dept/amfe-solvers/waves/models/cube.geo
[<class 'tbox.gmsh.MeshLoader'>] running gmsh on "/builds/am-dept/amfe-solvers/waves/models/cube.geo"...
[gmsh-out] b"Info : Running 'gmsh -3 -format msh2 -setnumber Lx 10.0 -setnumber Ly 10.0 -setnumber Nx 50 -setnumber Ny 50 -o cube.msh /builds/am-dept/amfe-solvers/waves/models/cube.geo' [Gmsh 4.13.1, 1 node, max. 1 thread]"
[gmsh-out] b'Info : Started on Fri Sep 6 07:16:27 2024'
[gmsh-out] b"Info : Reading '/builds/am-dept/amfe-solvers/waves/models/cube.geo'..."
[gmsh-out] b"Info : Done reading '/builds/am-dept/amfe-solvers/waves/models/cube.geo'"
[gmsh-out] b'Info : Meshing 1D...'
[gmsh-out] b'Info : [ 0%] Meshing curve 1 (Line)'
[gmsh-out] b'Info : [ 10%] Meshing curve 2 (Line)'
[gmsh-out] b'Info : [ 20%] Meshing curve 3 (Line)'
[gmsh-out] b'Info : [ 30%] Meshing curve 4 (Line)'
[gmsh-out] b'Info : [ 40%] Meshing curve 8 (Extruded)'
[gmsh-out] b'Info : [ 50%] Meshing curve 9 (Extruded)'
[gmsh-out] b'Info : [ 60%] Meshing curve 10 (Extruded)'
[gmsh-out] b'Info : [ 60%] Meshing curve 11 (Extruded)'
[gmsh-out] b'Info : [ 70%] Meshing curve 13 (Extruded)'
[gmsh-out] b'Info : [ 80%] Meshing curve 14 (Extruded)'
[gmsh-out] b'Info : [ 90%] Meshing curve 18 (Extruded)'
[gmsh-out] b'Info : [100%] Meshing curve 22 (Extruded)'
[gmsh-out] b'Info : Done meshing 1D (Wall 0.000230778s, CPU 0.000154s)'
[gmsh-out] b'Info : Meshing 2D...'
[gmsh-out] b'Info : [ 0%] Meshing surface 6 (Transfinite)'
[gmsh-out] b'Info : [ 20%] Meshing surface 15 (Extruded)'
[gmsh-out] b'Info : [ 40%] Meshing surface 19 (Extruded)'
[gmsh-out] b'Info : [ 60%] Meshing surface 23 (Extruded)'
[gmsh-out] b'Info : [ 70%] Meshing surface 27 (Extruded)'
[gmsh-out] b'Info : [ 90%] Meshing surface 28 (Extruded)'
[gmsh-out] b'Info : Done meshing 2D (Wall 0.0865734s, CPU 0.004745s)'
[gmsh-out] b'Info : Meshing 3D...'
[gmsh-out] b'Info : Meshing volume 1 (Extruded)'
[gmsh-out] b'Info : Done meshing 3D (Wall 0.0159597s, CPU 0.062469s)'
[gmsh-out] b'Info : Optimizing mesh...'
[gmsh-out] b'Info : Done optimizing mesh (Wall 3.6809e-05s, CPU 0.000127s)'
[gmsh-out] b'Info : 5202 nodes 8112 elements'
[gmsh-out] b"Info : Writing 'cube.msh'..."
[gmsh-out] b"Info : Done writing 'cube.msh'"
[gmsh-out] b'Info : Stopped on Fri Sep 6 07:16:27 2024 (From start: Wall 0.206048s, CPU 0.107634s)'
reading file cube.msh...
setting mesh name to "cube"
reading .msh format 2.2
counted 5202 nodes
counted 7704 elements
done
~GmshImport()
node source selected at node #1111 = 3 5 0 row=1110
dist 3.80957688224594e-12
nod= node #1111 = 3 5 0 row=1110
node source selected at node #3512 = 3 5 1 row=3511
dist 3.80957688224594e-12
nod= node #3512 = 3 5 1 row=3511
node source selected at node #1111 = 3 5 0 row=1110
dist 3.80957688224594e-12
nod= node #1111 = 3 5 0 row=1110
node source selected at node #3512 = 3 5 1 row=3511
dist 3.80957688224594e-12
nod= node #3512 = 3 5 1 row=3511
node source selected at node #1111 = 3 5 0 row=1110
dist 3.80957688224594e-12
nod= node #1111 = 3 5 0 row=1110
node source selected at node #3512 = 3 5 1 row=3511
dist 3.80957688224594e-12
nod= node #3512 = 3 5 1 row=3511
node source selected at node #1111 = 3 5 0 row=1110
dist 3.80957688224594e-12
nod= node #1111 = 3 5 0 row=1110
node source selected at node #3512 = 3 5 1 row=3511
dist 3.80957688224594e-12
nod= node #3512 = 3 5 1 row=3511
node source selected at node #2091 = 7 5 0 row=2090
dist 5.790825487013695e-12
nod= node #2091 = 7 5 0 row=2090
node source selected at node #4492 = 7 5 1 row=4491
dist 5.790825487013695e-12
nod= node #4492 = 7 5 1 row=4491
node source selected at node #2091 = 7 5 0 row=2090
dist 5.790825487013695e-12
nod= node #2091 = 7 5 0 row=2090
node source selected at node #4492 = 7 5 1 row=4491
dist 5.790825487013695e-12
nod= node #4492 = 7 5 1 row=4491
node source selected at node #2091 = 7 5 0 row=2090
dist 5.790825487013695e-12
nod= node #2091 = 7 5 0 row=2090
node source selected at node #4492 = 7 5 1 row=4491
dist 5.790825487013695e-12
nod= node #4492 = 7 5 1 row=4491
node source selected at node #2091 = 7 5 0 row=2090
dist 5.790825487013695e-12
nod= node #2091 = 7 5 0 row=2090
node source selected at node #4492 = 7 5 1 row=4491
dist 5.790825487013695e-12
nod= node #4492 = 7 5 1 row=4491
ForwardEuler
ttot = 1
dt = 0.004
savefreq = 5
ForwardEuler
ttot = 1
dt = 0.004
savefreq = 5
building K/M (TBB/lambda) using 1 threads...
processing Medium on Tag #1 (3D) named "Volume" (2500 elements) HEX8:2500 with c=10
S (5202,5202) nnz=91204
[cpu] usr:0.00s kern:0.01s real:0.01s
[cpu:buildKM] usr:0.00s kern:0.01s real:0.01s
building S (TBB/lambda) using 1 threads...
processing Boundary on Tag #7 (2D) named "FaceX0" (50 elements) QUAD4:50
normal=-1
0
0
processing Boundary on Tag #5 (2D) named "FaceX1" (50 elements) QUAD4:50
normal=1
0
0
processing Boundary on Tag #4 (2D) named "FaceY0" (50 elements) QUAD4:50
normal= 0
-1
0
processing Boundary on Tag #6 (2D) named "FaceY1" (50 elements) QUAD4:50
normal= 0
1
-0
S (5202,5202) nnz=2400
[cpu] usr:0.00s kern:0.01s real:0.01s
Time integration...
ForwardEuler
ttot = 1
dt = 0.004
savefreq = 5
[cpu] usr:0.02s kern:0.02s real:0.03s
~ForwardEuler()
~Problem()
still 1 source(s) remaining.
Source on Tag #1 (3D) named "Volume" (2500 elements) HEX8:2500 (20000 nodes) (use_count=3)
~Boundary()
~Boundary()
~Boundary()
~Boundary()
~Medium()
~GmshExport()
[runner-9gmcjbcq-project-2918-concurrent-1:01211] *** Process received signal ***
[runner-9gmcjbcq-project-2918-concurrent-1:01211] Signal: Segmentation fault (11)
[runner-9gmcjbcq-project-2918-concurrent-1:01211] Signal code: Address not mapped (1)
[runner-9gmcjbcq-project-2918-concurrent-1:01211] Failing at address: 0x7fe75d20d5da
Start 33: waves/tests/mat2/reflex.py
26/34 Test #28: waves/tests/mat1/planewave.py .......... Passed 1.73 sec
Start 34: waves/tests/mat2/sinsrc.py
27/34 Test #29: waves/tests/mat1/pulse.py ..............***Exception: SegFault 1.12 sec
[findbins] looking for linux/mingw libs
[findbins] loading /builds/am-dept/amfe-solvers/build/bin/fwkw.py
* OMP environment:
* MKL environment:
MKL_THREADING_LAYER = GNU
MKL_INTERFACE_LAYER = LP64
MKL_NUM_THREADS = 1
MKL_DOMAIN_NUM_THREADS = MKL_DOMAIN_ALL=1
MKL_DYNAMIC = FALSE
* KMP environment:
dir1= /builds/am-dept/amfe-solvers/ext/amfe/
testname= /builds/am-dept/amfe-solvers/waves/tests/mat1/pulse.py
creating workspace/waves_tests_mat1_pulse
[run.py] __file__ /builds/am-dept/amfe-solvers/waves/tests/mat1/pulse.py
--------------------------------------------------------------------------------
[1;34mPyStarting...[0m
starting test /builds/am-dept/amfe-solvers/waves/tests/mat1/pulse.py
time: Fri Sep 6 07:16:28 2024
hostname: runner-9gmcjbcq-project-2918-concurrent-1
[<class 'tbox.gmsh.MeshLoader'>] processing /builds/am-dept/amfe-solvers/waves/models/cube.geo
[<class 'tbox.gmsh.MeshLoader'>] running gmsh on "/builds/am-dept/amfe-solvers/waves/models/cube.geo"...
[gmsh-out] b"Info : Running 'gmsh -3 -format msh2 -setnumber Lx 5.0 -setnumber Ly 5.0 -setnumber Nx 50 -setnumber Ny 50 -o cube.msh /builds/am-dept/amfe-solvers/waves/models/cube.geo' [Gmsh 4.13.1, 1 node, max. 1 thread]"
[gmsh-out] b'Info : Started on Fri Sep 6 07:16:28 2024'
[gmsh-out] b"Info : Reading '/builds/am-dept/amfe-solvers/waves/models/cube.geo'..."
[gmsh-out] b"Info : Done reading '/builds/am-dept/amfe-solvers/waves/models/cube.geo'"
[gmsh-out] b'Info : Meshing 1D...'
[gmsh-out] b'Info : [ 0%] Meshing curve 1 (Line)'
[gmsh-out] b'Info : [ 10%] Meshing curve 2 (Line)'
[gmsh-out] b'Info : [ 20%] Meshing curve 3 (Line)'
[gmsh-out] b'Info : [ 30%] Meshing curve 4 (Line)'
[gmsh-out] b'Info : [ 40%] Meshing curve 8 (Extruded)'
[gmsh-out] b'Info : [ 50%] Meshing curve 9 (Extruded)'
[gmsh-out] b'Info : [ 60%] Meshing curve 10 (Extruded)'
[gmsh-out] b'Info : [ 60%] Meshing curve 11 (Extruded)'
[gmsh-out] b'Info : [ 70%] Meshing curve 13 (Extruded)'
[gmsh-out] b'Info : [ 80%] Meshing curve 14 (Extruded)'
[gmsh-out] b'Info : [ 90%] Meshing curve 18 (Extruded)'
[gmsh-out] b'Info : [100%] Meshing curve 22 (Extruded)'
[gmsh-out] b'Info : Done meshing 1D (Wall 0.000475261s, CPU 0.00243s)'
[gmsh-out] b'Info : Meshing 2D...'
[gmsh-out] b'Info : [ 0%] Meshing surface 6 (Transfinite)'
[gmsh-out] b'Info : [ 20%] Meshing surface 15 (Extruded)'
[gmsh-out] b'Info : [ 40%] Meshing surface 19 (Extruded)'
[gmsh-out] b'Info : [ 60%] Meshing surface 23 (Extruded)'
[gmsh-out] b'Info : [ 70%] Meshing surface 27 (Extruded)'
[gmsh-out] b'Info : [ 90%] Meshing surface 28 (Extruded)'
[gmsh-out] b'Info : Done meshing 2D (Wall 0.00461189s, CPU 0.032902s)'
[gmsh-out] b'Info : Meshing 3D...'
[gmsh-out] b'Info : Meshing volume 1 (Extruded)'
[gmsh-out] b'Info : Done meshing 3D (Wall 0.0835921s, CPU 0.090714s)'
[gmsh-out] b'Info : Optimizing mesh...'
[gmsh-out] b'Info : Done optimizing mesh (Wall 5.6187e-05s, CPU 0.000365s)'
[gmsh-out] b'Info : 5202 nodes 8112 elements'
[gmsh-out] b"Info : Writing 'cube.msh'..."
[gmsh-out] b"Info : Done writing 'cube.msh'"
[gmsh-out] b'Info : Stopped on Fri Sep 6 07:16:28 2024 (From start: Wall 0.1059s, CPU 0.220501s)'
reading file cube.msh...
setting mesh name to "cube"
reading .msh format 2.2
counted 5202 nodes
counted 7704 elements
done
~GmshImport()
ForwardEuler
ttot = 1
dt = 0.002
savefreq = 5
ForwardEuler
ttot = 1
dt = 0.002
savefreq = 5
building K/M (TBB/lambda) using 1 threads...
processing Medium on Tag #1 (3D) named "Volume" (2500 elements) HEX8:2500 with c=10
S (5202,5202) nnz=91204
[cpu] usr:0.01s kern:0.00s real:0.01s
[cpu:buildKM] usr:0.01s kern:0.00s real:0.01s
building S (TBB/lambda) using 1 threads...
processing Boundary on Tag #5 (2D) named "FaceX1" (50 elements) QUAD4:50
normal=1
0
0
processing Boundary on Tag #6 (2D) named "FaceY1" (50 elements) QUAD4:50
normal= 0
1
-0
S (5202,5202) nnz=1204
[cpu] usr:0.01s kern:0.00s real:0.01s
Time integration...
ForwardEuler
ttot = 1
dt = 0.002
savefreq = 5
[cpu] usr:0.08s kern:0.00s real:0.18s
~ForwardEuler()
~Problem()
still 1 source(s) remaining.
Source on Tag #8 (1D) named "Line1" (1 elements) LINE2:1 (2 nodes) (use_count=3)
~Boundary()
~Boundary()
~Medium()
~GmshExport()
[runner-9gmcjbcq-project-2918-concurrent-1:01476] *** Process received signal ***
[runner-9gmcjbcq-project-2918-concurrent-1:01476] Signal: Segmentation fault (11)
[runner-9gmcjbcq-project-2918-concurrent-1:01476] Signal code: Address not mapped (1)
[runner-9gmcjbcq-project-2918-concurrent-1:01476] Failing at address: 0x7fdbe220d5da
28/34 Test #30: waves/tests/mat1/sinsrc.py ............. Passed 1.00 sec
29/34 Test #32: waves/tests/mat2/pulse.py .............. Passed 1.17 sec
30/34 Test #31: waves/tests/mat2/interf1.py ............ Passed 1.34 sec
31/34 Test #34: waves/tests/mat2/sinsrc.py .............***Exception: SegFault 1.17 sec
[findbins] looking for linux/mingw libs
[findbins] loading /builds/am-dept/amfe-solvers/build/bin/fwkw.py
* OMP environment:
* MKL environment:
MKL_THREADING_LAYER = GNU
MKL_INTERFACE_LAYER = LP64
MKL_NUM_THREADS = 1
MKL_DOMAIN_NUM_THREADS = MKL_DOMAIN_ALL=1
MKL_DYNAMIC = FALSE
* KMP environment:
dir1= /builds/am-dept/amfe-solvers/ext/amfe/
testname= /builds/am-dept/amfe-solvers/waves/tests/mat2/sinsrc.py
creating workspace/waves_tests_mat2_sinsrc
[run.py] __file__ /builds/am-dept/amfe-solvers/waves/tests/mat2/sinsrc.py
--------------------------------------------------------------------------------
[1;34mPyStarting...[0m
starting test /builds/am-dept/amfe-solvers/waves/tests/mat2/sinsrc.py
time: Fri Sep 6 07:16:29 2024
hostname: runner-9gmcjbcq-project-2918-concurrent-1
[<class 'tbox.gmsh.MeshLoader'>] processing /builds/am-dept/amfe-solvers/waves/models/cube2mat.geo
[<class 'tbox.gmsh.MeshLoader'>] running gmsh on "/builds/am-dept/amfe-solvers/waves/models/cube2mat.geo"...
[gmsh-out] b"Info : Running 'gmsh -3 -format msh2 -setnumber Lx 2.0 -setnumber Ly1 10 -setnumber Ly2 10 -setnumber Nx 10 -setnumber Ny1 100 -setnumber Ny2 50 -o cube2mat.msh /builds/am-dept/amfe-solvers/waves/models/cube2mat.geo' [Gmsh 4.13.1, 1 node, max. 1 thread]"
[gmsh-out] b'Info : Started on Fri Sep 6 07:16:29 2024'
[gmsh-out] b"Info : Reading '/builds/am-dept/amfe-solvers/waves/models/cube2mat.geo'..."
[gmsh-out] b"Info : Done reading '/builds/am-dept/amfe-solvers/waves/models/cube2mat.geo'"
[gmsh-out] b'Info : Meshing 1D...'
[gmsh-out] b'Info : [ 0%] Meshing curve 1 (Line)'
[gmsh-out] b'Info : [ 10%] Meshing curve 2 (Line)'
[gmsh-out] b'Info : [ 20%] Meshing curve 3 (Line)'
[gmsh-out] b'Info : [ 20%] Meshing curve 4 (Line)'
[gmsh-out] b'Info : [ 30%] Meshing curve 5 (Line)'
[gmsh-out] b'Info : [ 30%] Meshing curve 6 (Line)'
[gmsh-out] b'Info : [ 40%] Meshing curve 7 (Line)'
[gmsh-out] b'Info : [ 40%] Meshing curve 13 (Extruded)'
[gmsh-out] b'Info : [ 50%] Meshing curve 14 (Extruded)'
[gmsh-out] b'Info : [ 50%] Meshing curve 15 (Extruded)'
[gmsh-out] b'Info : [ 60%] Meshing curve 16 (Extruded)'
[gmsh-out] b'Info : [ 60%] Meshing curve 18 (Extruded)'
[gmsh-out] b'Info : [ 70%] Meshing curve 19 (Extruded)'
[gmsh-out] b'Info : [ 70%] Meshing curve 23 (Extruded)'
[gmsh-out] b'Info : [ 80%] Meshing curve 27 (Extruded)'
[gmsh-out] b'Info : [ 80%] Meshing curve 35 (Extruded)'
[gmsh-out] b'Info : [ 90%] Meshing curve 36 (Extruded)'
[gmsh-out] b'Info : [ 90%] Meshing curve 38 (Extruded)'
[gmsh-out] b'Info : [100%] Meshing curve 40 (Extruded)'
[gmsh-out] b'Info : [100%] Meshing curve 41 (Extruded)'
[gmsh-out] b'Info : Done meshing 1D (Wall 0.000755392s, CPU 0.003418s)'
[gmsh-out] b'Info : Meshing 2D...'
[gmsh-out] b'Info : [ 0%] Meshing surface 9 (Transfinite)'
[gmsh-out] b'Info : [ 10%] Meshing surface 11 (Transfinite)'
[gmsh-out] b'Info : [ 20%] Meshing surface 20 (Extruded)'
[gmsh-out] b'Info : [ 30%] Meshing surface 24 (Extruded)'
[gmsh-out] b'Info : [ 40%] Meshing surface 28 (Extruded)'
[gmsh-out] b'Info : [ 50%] Meshing surface 32 (Extruded)'
[gmsh-out] b'Info : [ 60%] Meshing surface 33 (Extruded)'
[gmsh-out] b'Info : [ 70%] Meshing surface 42 (Extruded)'
[gmsh-out] b'Info : [ 80%] Meshing surface 46 (Extruded)'
[gmsh-out] b'Info : [ 90%] Meshing surface 54 (Extruded)'
[gmsh-out] b'Info : [100%] Meshing surface 55 (Extruded)'
[gmsh-out] b'Info : Done meshing 2D (Wall 0.00250615s, CPU 0.016719s)'
[gmsh-out] b'Info : Meshing 3D...'
[gmsh-out] b'Info : Meshing volume 1 (Extruded)'
[gmsh-out] b'Info : Meshing volume 2 (Extruded)'
[gmsh-out] b'Info : Done meshing 3D (Wall 0.00603721s, CPU 0.034776s)'
[gmsh-out] b'Info : Optimizing mesh...'
[gmsh-out] b'Info : Done optimizing mesh (Wall 1.88961e-05s, CPU 0.000104s)'
[gmsh-out] b'Info : 2646 nodes 4470 elements'
[gmsh-out] b"Info : Writing 'cube2mat.msh'..."
[gmsh-out] b"Info : Done writing 'cube2mat.msh'"
[gmsh-out] b'Info : Stopped on Fri Sep 6 07:16:29 2024 (From start: Wall 0.0918784s, CPU 0.128787s)'
reading file cube2mat.msh...
setting mesh name to "cube2mat"
reading .msh format 2.2
counted 2646 nodes
counted 1477 elements
done
~GmshImport()
ForwardEuler
ttot = 2
dt = 0.008
savefreq = 5
ForwardEuler
ttot = 2
dt = 0.008
savefreq = 5
building K/M (TBB/lambda) using 1 threads...
processing Medium on Tag #1 (3D) named "Volume1" (784 elements) HEX8:784 with c=10
processing Medium on Tag #2 (3D) named "Volume2" (384 elements) HEX8:384 with c=20
S (2646,2646) nnz=43900
[cpu] usr:0.01s kern:0.00s real:0.01s
[cpu:buildKM] usr:0.01s kern:0.00s real:0.01s
building S (TBB/lambda) using 1 threads...
processing Boundary on Tag #6 (2D) named "FaceY1" (8 elements) QUAD4:8
normal= 0
-1
0
processing Boundary on Tag #3 (2D) named "FaceY0" (8 elements) QUAD4:8
normal= 0
-1
0
S (2646,2646) nnz=200
[cpu] usr:0.01s kern:0.00s real:0.01s
Time integration...
ForwardEuler
ttot = 2
dt = 0.008
savefreq = 5
[cpu] usr:0.07s kern:0.00s real:0.07s
~ForwardEuler()
~Problem()
still 1 source(s) remaining.
Source on Tag #3 (2D) named "FaceY0" (8 elements) QUAD4:8 (32 nodes) (use_count=3)
~Boundary()
~Boundary()
~Medium()
~Medium()
~GmshExport()
[runner-9gmcjbcq-project-2918-concurrent-1:01650] *** Process received signal ***
[runner-9gmcjbcq-project-2918-concurrent-1:01650] Signal: Segmentation fault (11)
[runner-9gmcjbcq-project-2918-concurrent-1:01650] Signal code: Address not mapped (1)
[runner-9gmcjbcq-project-2918-concurrent-1:01650] Failing at address: 0x7fe8ad80d5da
32/34 Test #33: waves/tests/mat2/reflex.py ............. Passed 1.30 sec
33/34 Test #20: heat/tests/fe2/heat_mpi.py ............. Passed 6.74 sec
34/34 Test #19: heat/tests/fe2/Lmpi.py ................. Passed 7.55 sec
68% tests passed, 11 tests failed out of 34
Total Test time (real) = 9.72 sec
The following tests FAILED:
11 - heat/tests/basics/dirichletx.py (SEGFAULT)
12 - heat/tests/basics/dirichletx_stru.py (SEGFAULT)
14 - heat/tests/basics/mat2hole.py (SEGFAULT)
15 - heat/tests/basics/source.py (SEGFAULT)
16 - heat/tests/directors/material.py (SEGFAULT)
17 - heat/tests/directors/neumann.py (SEGFAULT)
21 - heat/tests/fe2/micro.py (SEGFAULT)
23 - heat/tests/periodic/honeycomb.py (SEGFAULT)
27 - waves/tests/mat1/interf2.py (SEGFAULT)
29 - waves/tests/mat1/pulse.py (SEGFAULT)
34 - waves/tests/mat2/sinsrc.py (SEGFAULT)
Errors while running CTest
section_end:1725606992:step_script
[0Ksection_start:1725606992:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1725606993:cleanup_file_variables
[0K[31;1mERROR: Job failed: exit code 1
[0;m