[0KRunning with gitlab-runner 17.3.1 (66269445)[0;m
[0K on warson Fyn-e_YWP, system ID: s_9a4f823998d2[0;m
[0K[36;1mResolving secrets[0;m[0;m
section_start:1725530484:prepare_executor
[0K[0K[36;1mPreparing the "docker" executor[0;m[0;m
[0KUsing Docker executor with image rboman/waves-py3:latest ...[0;m
[0KPulling docker image rboman/waves-py3:latest ...[0;m
[0KUsing docker image sha256:8f9839f49d7ff7e9b9d431fc1e3fd1694c885e83e2ce167b66f5a145555f3863 for rboman/waves-py3:latest with digest rboman/waves-py3@sha256:eca97bd22fed99d331d855a1b8321cea567cc4155f2746f26be35bdff0b3a40d ...[0;m
section_end:1725530486:prepare_executor
[0Ksection_start:1725530486:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on runner-fyn-eywp-project-2918-concurrent-0 via warson...
section_end:1725530486:prepare_script
[0Ksection_start:1725530486:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mFetching changes with git depth set to 20...[0;m
Initialized empty Git repository in /builds/am-dept/amfe-solvers/.git/
[32;1mCreated fresh repository.[0;m
[32;1mChecking out 03a97500 as detached HEAD (ref is main)...[0;m
[32;1mUpdating/initializing submodules recursively with git depth set to 20...[0;m
Submodule 'ext/amfe' (https://gitlab-ci-token:[MASKED]@gitlab.uliege.be/am-dept/amfe.git) registered for path 'ext/amfe'
Synchronizing submodule url for 'ext/amfe'
Cloning into '/builds/am-dept/amfe-solvers/ext/amfe'...
Submodule path 'ext/amfe': checked out '9d4ad324c7ba732d70b6f08c50030c83252a8e09'
[32;1mUpdated submodules[0;m
Synchronizing submodule url for 'ext/amfe'
Entering 'ext/amfe'
section_end:1725530488:get_sources
[0Ksection_start:1725530488:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build (145475)...[0;m
Downloading artifacts from coordinator... ok [0;m host[0;m=gitlab.uliege.be id[0;m=145475 responseStatus[0;m=200 OK token[0;m=glcbt-64
section_end:1725530488:download_artifacts
[0Ksection_start:1725530488:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0KUsing docker image sha256:8f9839f49d7ff7e9b9d431fc1e3fd1694c885e83e2ce167b66f5a145555f3863 for rboman/waves-py3:latest with digest rboman/waves-py3@sha256:eca97bd22fed99d331d855a1b8321cea567cc4155f2746f26be35bdff0b3a40d ...[0;m
[32;1m$ source /opt/intel/oneapi/mkl/latest/env/vars.sh[0;m
[32;1m$ source /opt/intel/oneapi/tbb/latest/env/vars.sh[0;m
[32;1m$ echo $(nproc)[0;m
32
[32;1m$ printenv | sort[0;m
CI=true
CI_API_GRAPHQL_URL=https://gitlab.uliege.be/api/graphql
CI_API_V4_URL=https://gitlab.uliege.be/api/v4
CI_BUILDS_DIR=/builds
CI_COMMIT_AUTHOR=Boman Romain <r.boman@uliege.be>
CI_COMMIT_BEFORE_SHA=459b9997b500952b8e40c9551cccf9ca34e10541
CI_COMMIT_BRANCH=main
CI_COMMIT_DESCRIPTION=
CI_COMMIT_MESSAGE=Merge branch 'boman' into 'main'
CI_COMMIT_REF_NAME=main
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CI_COMMIT_TITLE=Merge branch 'boman' into 'main'
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CI_CONFIG_PATH=.gitlab-ci.yml
CI_DEFAULT_BRANCH=main
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CI_DEPENDENCY_PROXY_PASSWORD=[MASKED]
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CI_JOB_ID=145484
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CI_JOB_NAME=ctest
CI_JOB_NAME_SLUG=ctest
CI_JOB_STAGE=test
CI_JOB_STARTED_AT=2024-09-05T10:01:23Z
CI_JOB_STATUS=running
CI_JOB_TIMEOUT=3600
CI_JOB_TOKEN=[MASKED]
CI_JOB_URL=https://gitlab.uliege.be/am-dept/amfe-solvers/-/jobs/145484
CI_NODE_TOTAL=1
CI_PAGES_DOMAIN=gitlabpages.uliege.be
CI_PAGES_URL=https://am-dept.gitlabpages.uliege.be/amfe-solvers
CI_PIPELINE_CREATED_AT=2024-09-05T08:22:05Z
CI_PIPELINE_ID=44989
CI_PIPELINE_IID=17
CI_PIPELINE_NAME=
CI_PIPELINE_SOURCE=push
CI_PIPELINE_URL=https://gitlab.uliege.be/am-dept/amfe-solvers/-/pipelines/44989
CI_PROJECT_CLASSIFICATION_LABEL=
CI_PROJECT_DESCRIPTION=Example of FE solvers using the amfe library
CI_PROJECT_DIR=/builds/am-dept/amfe-solvers
CI_PROJECT_ID=2918
CI_PROJECT_NAME=amfe-solvers
CI_PROJECT_NAMESPACE=am-dept
CI_PROJECT_NAMESPACE_ID=59
CI_PROJECT_PATH=am-dept/amfe-solvers
CI_PROJECT_PATH_SLUG=am-dept-amfe-solvers
CI_PROJECT_REPOSITORY_LANGUAGES=python,c++,glsl,cmake,swig
CI_PROJECT_ROOT_NAMESPACE=am-dept
CI_PROJECT_TITLE=amfe-solvers
CI_PROJECT_URL=https://gitlab.uliege.be/am-dept/amfe-solvers
CI_PROJECT_VISIBILITY=public
CI_REGISTRY=gitlab.uliege.be:5050
CI_REGISTRY_IMAGE=gitlab.uliege.be:5050/am-dept/amfe-solvers
CI_REGISTRY_PASSWORD=[MASKED]
CI_REGISTRY_USER=gitlab-ci-token
CI_REPOSITORY_URL=https://gitlab-ci-token:[MASKED]@gitlab.uliege.be/am-dept/amfe-solvers.git
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CI_SERVER_HOST=gitlab.uliege.be
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CI_SERVER_PROTOCOL=https
CI_SERVER_REVISION=df01858216e
CI_SERVER_SHELL_SSH_HOST=gitlab.uliege.be
CI_SERVER_SHELL_SSH_PORT=22
CI_SERVER_TLS_CA_FILE=/builds/am-dept/amfe-solvers.tmp/CI_SERVER_TLS_CA_FILE
CI_SERVER_URL=https://gitlab.uliege.be
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CI_SERVER_VERSION_MAJOR=17
CI_SERVER_VERSION_MINOR=3
CI_SERVER_VERSION_PATCH=1
CI_TEMPLATE_REGISTRY_HOST=registry.gitlab.com
CMAKE_PREFIX_PATH=/opt/intel/oneapi/tbb/2021.13/env/..:/opt/intel/oneapi/mkl/2024.2/lib/cmake:
CPATH=/opt/intel/oneapi/tbb/2021.13/env/../include:/opt/intel/oneapi/mkl/2024.2/include:
DEBIAN_FRONTEND=noninteractive
FF_CLEAN_UP_FAILED_CACHE_EXTRACT=false
FF_DISABLE_AUTOMATIC_TOKEN_ROTATION=false
FF_DISABLE_POWERSHELL_STDIN=false
FF_DISABLE_UMASK_FOR_DOCKER_EXECUTOR=false
FF_DISABLE_UMASK_FOR_KUBERNETES_EXECUTOR=false
FF_ENABLE_BASH_EXIT_CODE_CHECK=false
FF_ENABLE_JOB_CLEANUP=false
FF_KUBERNETES_HONOR_ENTRYPOINT=false
FF_LOG_IMAGES_CONFIGURED_FOR_JOB=false
FF_NETWORK_PER_BUILD=false
FF_POSIXLY_CORRECT_ESCAPES=false
FF_PRINT_POD_EVENTS=false
FF_RESOLVE_FULL_TLS_CHAIN=false
FF_RETRIEVE_POD_WARNING_EVENTS=true
FF_SCRIPT_SECTIONS=false
FF_SECRET_RESOLVING_FAILS_IF_MISSING=true
FF_SET_PERMISSIONS_BEFORE_CLEANUP=true
FF_SKIP_NOOP_BUILD_STAGES=true
FF_TEST_FEATURE=false
FF_TIMESTAMPS=false
FF_USE_ADVANCED_POD_SPEC_CONFIGURATION=false
FF_USE_DIRECT_DOWNLOAD=true
FF_USE_DOCKER_AUTOSCALER_DIAL_STDIO=true
FF_USE_DUMB_INIT_WITH_KUBERNETES_EXECUTOR=false
FF_USE_DYNAMIC_TRACE_FORCE_SEND_INTERVAL=false
FF_USE_FASTZIP=false
FF_USE_GIT_BUNDLE_URIS=true
FF_USE_INIT_WITH_DOCKER_EXECUTOR=false
FF_USE_LEGACY_GCS_CACHE_ADAPTER=false
FF_USE_LEGACY_KUBERNETES_EXECUTION_STRATEGY=false
FF_USE_NEW_BASH_EVAL_STRATEGY=false
FF_USE_POD_ACTIVE_DEADLINE_SECONDS=true
FF_USE_POWERSHELL_PATH_RESOLVER=false
FF_USE_WINDOWS_JOB_OBJECT=false
FF_USE_WINDOWS_LEGACY_PROCESS_STRATEGY=false
GITLAB_CI=true
GITLAB_ENV=/builds/am-dept/amfe-solvers.tmp/gitlab_runner_env
GITLAB_FEATURES=audit_events,blocked_issues,board_iteration_lists,code_owners,code_review_analytics,full_codequality_report,group_activity_analytics,group_bulk_edit,issuable_default_templates,issue_weights,iterations,ldap_group_sync,merge_request_approvers,milestone_charts,multiple_issue_assignees,multiple_ldap_servers,multiple_merge_request_assignees,multiple_merge_request_reviewers,project_merge_request_analytics,protected_refs_for_users,push_rules,resource_access_token,seat_link,seat_usage_quotas,pipelines_usage_quotas,transfer_usage_quotas,product_analytics_usage_quotas,wip_limits,zoekt_code_search,blocked_work_items,description_diffs,send_emails_from_admin_area,repository_size_limit,maintenance_mode,scoped_issue_board,contribution_analytics,group_webhooks,member_lock,elastic_search,repository_mirrors,ai_chat,adjourned_deletion_for_projects_and_groups,admin_audit_log,auditor_user,blocking_merge_requests,board_assignee_lists,board_milestone_lists,ci_secrets_management,ci_pipeline_cancellation_restrictions,cluster_agents_ci_impersonation,cluster_agents_user_impersonation,cluster_deployments,code_owner_approval_required,code_suggestions,commit_committer_check,commit_committer_name_check,compliance_framework,custom_compliance_frameworks,custom_file_templates,custom_project_templates,cycle_analytics_for_groups,cycle_analytics_for_projects,db_load_balancing,default_branch_protection_restriction_in_groups,default_project_deletion_protection,delete_unconfirmed_users,dependency_proxy_for_packages,disable_name_update_for_users,disable_personal_access_tokens,domain_verification,epics,extended_audit_events,external_authorization_service_api_management,feature_flags_code_references,file_locks,geo,generic_alert_fingerprinting,git_two_factor_enforcement,group_allowed_email_domains,group_coverage_reports,group_forking_protection,group_level_compliance_dashboard,group_milestone_project_releases,group_project_templates,group_repository_analytics,group_saml,group_scoped_ci_variables,ide_schema_config,incident_metric_upload,instance_level_scim,jira_issues_integration,ldap_group_sync_filter,merge_request_performance_metrics,admin_merge_request_approvers_rules,merge_trains,metrics_reports,multiple_alert_http_integrations,multiple_approval_rules,multiple_group_issue_boards,object_storage,microsoft_group_sync,operations_dashboard,package_forwarding,pages_size_limit,pages_multiple_versions,productivity_analytics,project_aliases,protected_environments,reject_non_dco_commits,reject_unsigned_commits,remote_development,saml_group_sync,service_accounts,scoped_labels,smartcard_auth,ssh_certificates,swimlanes,target_branch_rules,type_of_work_analytics,minimal_access_role,unprotection_restrictions,ci_project_subscriptions,incident_timeline_view,oncall_schedules,escalation_policies,zentao_issues_integration,coverage_check_approval_rule,issuable_resource_links,group_protected_branches,group_level_merge_checks_setting,oidc_client_groups_claim,disable_deleting_account_for_users,disable_private_profiles,group_saved_replies,requested_changes_block_merge_request,project_saved_replies,group_ip_restriction,issues_analytics,password_complexity,group_wikis,email_additional_text,custom_file_templates_for_namespace,incident_sla,export_user_permissions,cross_project_pipelines,feature_flags_related_issues,merge_pipelines,ci_cd_projects,github_integration,ai_config_chat,ai_features,glab_ask_git_command,ai_analyze_ci_job_failure,ai_agents,ai_review_mr,api_discovery,api_fuzzing,auto_rollback,breach_and_attack_simulation,cluster_image_scanning,external_status_checks,combined_project_analytics_dashboards,compliance_pipeline_configuration,container_scanning,credentials_inventory,custom_roles,dast,dependency_scanning,dora4_analytics,epic_colors,enterprise_templates,environment_alerts,evaluate_group_level_compliance_pipeline,explain_code,external_audit_events,experimental_features,generate_description,generate_commit_message,generate_test_file,ai_generate_cube_query,git_abuse_rate_limit,group_ci_cd_analytics,group_level_compliance_adherence_report,group_level_compliance_violations_report,group_level_analytics_dashboard,incident_management,inline_codequality,insights,issuable_health_status,issues_completed_analytics,jira_vulnerabilities_integration,jira_issue_association_enforcement,kubernetes_cluster_vulnerabilities,license_scanning,okrs,personal_access_token_expiration_policy,pre_receive_secret_detection,product_analytics,project_quality_summary,project_level_analytics_dashboard,prometheus_alerts,quality_management,related_epics,release_evidence_test_artifacts,report_approver_rules,required_ci_templates,requirements,runner_maintenance_note,runner_performance_insights,runner_performance_insights_for_namespace,runner_upgrade_management,runner_upgrade_management_for_namespace,sast,sast_advanced,sast_iac,sast_custom_rulesets,sast_fp_reduction,secret_detection,security_configuration_in_ui,security_dashboard,security_on_demand_scans,security_orchestration_policies,security_training,ssh_key_expiration_policy,summarize_mr_changes,summarize_my_mr_code_review,summarize_new_merge_request,summarize_comments,stale_runner_cleanup_for_namespace,status_page,suggested_reviewers,subepics,observability,troubleshoot_job,unique_project_download_limit,vulnerability_finding_signatures,container_scanning_for_registry,coverage_fuzzing,devops_adoption,group_level_devops_adoption,instance_level_devops_adoption
GITLAB_USER_EMAIL=r.boman@uliege.be
GITLAB_USER_ID=41
GITLAB_USER_LOGIN=rboman
GITLAB_USER_NAME=Boman Romain
GIT_LFS_SKIP_SMUDGE=1
GIT_STRATEGY=clone
GIT_SUBMODULE_STRATEGY=recursive
HOME=/root
HOSTNAME=runner-fyn-eywp-project-2918-concurrent-0
INCLUDE=/opt/gmsh/include:/opt/mumps-4.10.0/include:
LD_LIBRARY_PATH=/opt/intel/oneapi/tbb/2021.13/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mkl/2024.2/lib:
LIB=/opt/gmsh/lib:/opt/mumps-4.10.0/lib:
LIBRARY_PATH=/opt/intel/oneapi/tbb/2021.13/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mkl/2024.2/lib/:
MKLROOT=/opt/intel/oneapi/mkl/2024.2
MKL_THREADING_LAYER=GNU
NLSPATH=/opt/intel/oneapi/mkl/2024.2/share/locale/%l_%t/%N:
OLDPWD=/
PATH=/opt/intel/oneapi/mkl/2024.2/bin/:/opt/gmsh/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
PKG_CONFIG_PATH=/opt/intel/oneapi/tbb/2021.13/env/../lib/pkgconfig:/opt/intel/oneapi/mkl/2024.2/lib/pkgconfig:
PWD=/builds/am-dept/amfe-solvers
PYTHONPATH=/opt/gmsh/bin:
RUNNER_TEMP_PROJECT_DIR=/builds/am-dept/amfe-solvers.tmp
SHLVL=1
See merge request am-dept/amfe-solvers!4
See merge request am-dept/amfe-solvers!4
TBBROOT=/opt/intel/oneapi/tbb/2021.13/env/..
_=/usr/bin/printenv
update submodule
update submodule
[32;1m$ cd build[0;m
[32;1m$ ctest --output-on-failure -j 8[0;m
Test project /builds/am-dept/amfe-solvers/build
Start 1: fwk/tests/timers.py
Start 2: tbox/tests/basicops.py
Start 3: tbox/tests/fem/elem1s.py
Start 4: tbox/tests/gmshio.py
Start 5: tbox/tests/meshDeformation.py
Start 6: tbox/tests/meshDeformation3.py
Start 7: tbox/tests/mpi/helloworld.py
Start 8: tbox/tests/stdvec.py
1/34 Test #8: tbox/tests/stdvec.py ................... Passed 0.48 sec
Start 9: tboxVtk/tests/vtkio.py
2/34 Test #7: tbox/tests/mpi/helloworld.py ........... Passed 0.49 sec
Start 10: heat/tests/basics/anisotropy.py
3/34 Test #2: tbox/tests/basicops.py ................. Passed 0.55 sec
Start 11: heat/tests/basics/dirichletx.py
4/34 Test #4: tbox/tests/gmshio.py ................... Passed 0.62 sec
Start 12: heat/tests/basics/dirichletx_stru.py
5/34 Test #5: tbox/tests/meshDeformation.py .......... Passed 0.68 sec
Start 13: heat/tests/basics/dirichlety.py
6/34 Test #6: tbox/tests/meshDeformation3.py ......... Passed 0.69 sec
Start 14: heat/tests/basics/mat2hole.py
7/34 Test #3: tbox/tests/fem/elem1s.py ............... Passed 0.70 sec
Start 15: heat/tests/basics/source.py
8/34 Test #9: tboxVtk/tests/vtkio.py ................. Passed 0.54 sec
Start 16: heat/tests/directors/material.py
9/34 Test #10: heat/tests/basics/anisotropy.py ........ Passed 0.73 sec
Start 17: heat/tests/directors/neumann.py
10/34 Test #12: heat/tests/basics/dirichletx_stru.py ...***Exception: SegFault 0.62 sec
[findbins] looking for linux/mingw libs
[findbins] loading /builds/am-dept/amfe-solvers/build/bin/fwkw.py
* OMP environment:
* MKL environment:
MKL_THREADING_LAYER = GNU
MKL_INTERFACE_LAYER = LP64
MKL_NUM_THREADS = 1
MKL_DOMAIN_NUM_THREADS = MKL_DOMAIN_ALL=1
MKL_DYNAMIC = FALSE
* KMP environment:
dir1= /builds/am-dept/amfe-solvers/ext/amfe/
testname= /builds/am-dept/amfe-solvers/heat/tests/basics/dirichletx_stru.py
creating workspace/heat_tests_basics_dirichletx_stru
[run.py] __file__ /builds/am-dept/amfe-solvers/heat/tests/basics/dirichletx_stru.py
--------------------------------------------------------------------------------
[1;34mPyStarting...[0m
starting test /builds/am-dept/amfe-solvers/heat/tests/basics/dirichletx_stru.py
time: Thu Sep 5 10:01:30 2024
hostname: runner-fyn-eywp-project-2918-concurrent-0
[<class 'tbox.gmsh.MeshLoader'>] processing /builds/am-dept/amfe-solvers/heat/models/rect_stru.geo
[<class 'tbox.gmsh.MeshLoader'>] running gmsh on "/builds/am-dept/amfe-solvers/heat/models/rect_stru.geo"...
[gmsh-out] b"Info : Running 'gmsh -3 -format msh2 -setnumber Lx 10.0 -setnumber Ly 10.0 -setnumber Nx 10 -setnumber Ny 10 -o rect_stru.msh /builds/am-dept/amfe-solvers/heat/models/rect_stru.geo' [Gmsh 4.13.1, 1 node, max. 1 thread]"
[gmsh-out] b'Info : Started on Thu Sep 5 10:01:30 2024'
[gmsh-out] b"Info : Reading '/builds/am-dept/amfe-solvers/heat/models/rect_stru.geo'..."
[gmsh-out] b"Info : Done reading '/builds/am-dept/amfe-solvers/heat/models/rect_stru.geo'"
[gmsh-out] b'Info : Meshing 1D...'
[gmsh-out] b'Info : [ 0%] Meshing curve 1 (Line)'
[gmsh-out] b'Info : [ 30%] Meshing curve 2 (Line)'
[gmsh-out] b'Info : [ 60%] Meshing curve 3 (Line)'
[gmsh-out] b'Info : [ 80%] Meshing curve 4 (Line)'
[gmsh-out] b'Info : Done meshing 1D (Wall 0.000140336s, CPU 0.000599s)'
[gmsh-out] b'Info : Meshing 2D...'
[gmsh-out] b'Info : Meshing surface 1 (Transfinite)'
[gmsh-out] b'Info : Done meshing 2D (Wall 4.9133e-05s, CPU 0.00021s)'
[gmsh-out] b'Info : Meshing 3D...'
[gmsh-out] b'Info : Done meshing 3D (Wall 3.2212e-05s, CPU 0.000139s)'
[gmsh-out] b'Info : 121 nodes 244 elements'
[gmsh-out] b"Info : Writing 'rect_stru.msh'..."
[gmsh-out] b"Info : Done writing 'rect_stru.msh'"
[gmsh-out] b'Info : Stopped on Thu Sep 5 10:01:30 2024 (From start: Wall 0.00206726s, CPU 0.024076s)'
reading file rect_stru.msh...
setting mesh name to "rect_stru"
reading .msh format 2.2
counted 121 nodes
counted 244 elements
done
~GmshImport()
tag=Tag #9 (2D) named "S1" (200 elements) TRI3:200
* it #0 |r|2 = 4.359e-05 |r|inf = 1.000e-05
* it #1 |r|2 = 1.632e-19 |r|inf = 6.099e-20
writing file: rect_stru.pos... done
---CPU statistics ---
user real kernel
BCs 0.0 0.0 0.0
Kass 0.0 0.0 0.0
post 0.0 0.0 0.0
prepro 0.0 0.0 0.0
residual 0.0 0.0 0.0
solve 0.0 0.0 0.0
total 0.0 0.0 0.0
---------------------
~GmshExport()
~Extractor()
[CTest] mean(Tbottom) = 4.000000 (expected 4.000000 +/- 0.0%)
rel diff = 1.899592e-13 <= 1.000000e-09 [ok]
[CTest] max(Tbottom) = 5.000000 (expected 5.000000 +/- 0.0%)
rel diff = 0.000000e+00 <= 1.000000e-10 [ok]
[CTest] min(Tbottom) = 3.000000 (expected 3.000000 +/- 0.0%)
rel diff = 0.000000e+00 <= 1.000000e-10 [ok]
[1;32m** All tests are OK![0m
~Solver()
~Problem()
~Dirichlet()
~Dirichlet()
~Medium()
~MshData()
[runner-fyn-eywp-project-2918-concurrent-0:00291] *** Process received signal ***
[runner-fyn-eywp-project-2918-concurrent-0:00291] Signal: Segmentation fault (11)
[runner-fyn-eywp-project-2918-concurrent-0:00291] Signal code: Address not mapped (1)
[runner-fyn-eywp-project-2918-concurrent-0:00291] Failing at address: 0x7f794740d5da
Start 18: heat/tests/directors/source.py
11/34 Test #11: heat/tests/basics/dirichletx.py ........***Exception: SegFault 0.76 sec
[findbins] looking for linux/mingw libs
[findbins] loading /builds/am-dept/amfe-solvers/build/bin/fwkw.py
* OMP environment:
* MKL environment:
MKL_THREADING_LAYER = GNU
MKL_INTERFACE_LAYER = LP64
MKL_NUM_THREADS = 1
MKL_DOMAIN_NUM_THREADS = MKL_DOMAIN_ALL=1
MKL_DYNAMIC = FALSE
* KMP environment:
dir1= /builds/am-dept/amfe-solvers/ext/amfe/
testname= /builds/am-dept/amfe-solvers/heat/tests/basics/dirichletx.py
creating workspace/heat_tests_basics_dirichletx
[run.py] __file__ /builds/am-dept/amfe-solvers/heat/tests/basics/dirichletx.py
--------------------------------------------------------------------------------
[1;34mPyStarting...[0m
starting test /builds/am-dept/amfe-solvers/heat/tests/basics/dirichletx.py
time: Thu Sep 5 10:01:30 2024
hostname: runner-fyn-eywp-project-2918-concurrent-0
[<class 'tbox.gmsh.MeshLoader'>] processing /builds/am-dept/amfe-solvers/heat/models/rect.geo
[<class 'tbox.gmsh.MeshLoader'>] running gmsh on "/builds/am-dept/amfe-solvers/heat/models/rect.geo"...
[gmsh-out] b"Info : Running 'gmsh -3 -format msh2 -setnumber Lx 10.0 -setnumber Ly 10.0 -setnumber lc 0.5 -o rect.msh /builds/am-dept/amfe-solvers/heat/models/rect.geo' [Gmsh 4.13.1, 1 node, max. 1 thread]"
[gmsh-out] b'Info : Started on Thu Sep 5 10:01:30 2024'
[gmsh-out] b"Info : Reading '/builds/am-dept/amfe-solvers/heat/models/rect.geo'..."
[gmsh-out] b"Info : Done reading '/builds/am-dept/amfe-solvers/heat/models/rect.geo'"
[gmsh-out] b'Info : Meshing 1D...'
[gmsh-out] b'Info : [ 0%] Meshing curve 1 (Line)'
[gmsh-out] b'Info : [ 30%] Meshing curve 2 (Line)'
[gmsh-out] b'Info : [ 60%] Meshing curve 3 (Line)'
[gmsh-out] b'Info : [ 80%] Meshing curve 4 (Line)'
[gmsh-out] b'Info : Done meshing 1D (Wall 0.000228324s, CPU 0.000722s)'
[gmsh-out] b'Info : Meshing 2D...'
[gmsh-out] b'Info : Meshing surface 1 (Plane, Frontal-Delaunay)'
[gmsh-out] b'Info : Done meshing 2D (Wall 0.00844593s, CPU 0.029654s)'
[gmsh-out] b'Info : Meshing 3D...'
[gmsh-out] b'Info : Done meshing 3D (Wall 2.8033e-05s, CPU 0.000104s)'
[gmsh-out] b'Info : 510 nodes 1022 elements'
[gmsh-out] b"Info : Writing 'rect.msh'..."
[gmsh-out] b"Info : Done writing 'rect.msh'"
[gmsh-out] b'Info : Stopped on Thu Sep 5 10:01:30 2024 (From start: Wall 0.0126359s, CPU 0.044947s)'
reading file rect.msh...
setting mesh name to "rect"
reading .msh format 2.2
counted 510 nodes
counted 1022 elements
done
~GmshImport()
tag=Tag #9 (2D) named "S1" (938 elements) TRI3:938
* it #0 |r|2 = 7.577e-05 |r|inf = 1.513e-05
* it #1 |r|2 = 3.568e-19 |r|inf = 5.421e-20
writing file: rect.pos... done
---CPU statistics ---
user real kernel
BCs 0.0 0.0 0.0
Kass 0.0 0.0 0.0
post 0.0 0.0 0.0
prepro 0.0 0.0 0.0
residual 0.0 0.0 0.0
solve 0.0 0.0 0.0
total 0.0 0.1 0.0
---------------------
~GmshExport()
~Extractor()
[CTest] mean(Tbottom) = 4.000000 (expected 4.000000 +/- 0.0%)
rel diff = 1.973977e-13 <= 1.000000e-09 [ok]
[CTest] max(Tbottom) = 5.000000 (expected 5.000000 +/- 0.0%)
rel diff = 0.000000e+00 <= 1.000000e-10 [ok]
[CTest] min(Tbottom) = 3.000000 (expected 3.000000 +/- 0.0%)
rel diff = 0.000000e+00 <= 1.000000e-10 [ok]
[1;32m** All tests are OK![0m
~Solver()
~Problem()
~Dirichlet()
~Dirichlet()
~Medium()
~MshData()
[runner-fyn-eywp-project-2918-concurrent-0:00237] *** Process received signal ***
[runner-fyn-eywp-project-2918-concurrent-0:00237] Signal: Segmentation fault (11)
[runner-fyn-eywp-project-2918-concurrent-0:00237] Signal code: Address not mapped (1)
[runner-fyn-eywp-project-2918-concurrent-0:00237] Failing at address: 0x7f6dbb80d5da
Start 19: heat/tests/fe2/Lmpi.py
12/34 Test #13: heat/tests/basics/dirichlety.py ........ Passed 0.64 sec
Start 20: heat/tests/fe2/heat_mpi.py
13/34 Test #15: heat/tests/basics/source.py ............ Passed 0.66 sec
Start 21: heat/tests/fe2/micro.py
14/34 Test #14: heat/tests/basics/mat2hole.py .......... Passed 0.70 sec
Start 22: heat/tests/nonlinear/mat2vark.py
15/34 Test #1: fwk/tests/timers.py .................... Passed 1.97 sec
Start 23: heat/tests/periodic/honeycomb.py
16/34 Test #17: heat/tests/directors/neumann.py ........ Passed 0.77 sec
Start 24: heat/tests/periodic/lincomb.py
17/34 Test #21: heat/tests/fe2/micro.py ................ Passed 0.65 sec
Start 25: heat/tests/periodic/lincomb_fast.py
18/34 Test #18: heat/tests/directors/source.py ......... Passed 0.77 sec
Start 26: waves/tests/mat1/interf1.py
19/34 Test #16: heat/tests/directors/material.py ....... Passed 1.05 sec
Start 27: waves/tests/mat1/interf2.py
20/34 Test #22: heat/tests/nonlinear/mat2vark.py ....... Passed 0.80 sec
Start 28: waves/tests/mat1/planewave.py
21/34 Test #25: heat/tests/periodic/lincomb_fast.py .... Passed 0.82 sec
Start 29: waves/tests/mat1/pulse.py
22/34 Test #26: waves/tests/mat1/interf1.py ............ Passed 1.01 sec
Start 30: waves/tests/mat1/sinsrc.py
23/34 Test #24: heat/tests/periodic/lincomb.py ......... Passed 1.13 sec
Start 31: waves/tests/mat2/interf1.py
24/34 Test #27: waves/tests/mat1/interf2.py ............ Passed 1.20 sec
Start 32: waves/tests/mat2/pulse.py
25/34 Test #28: waves/tests/mat1/planewave.py .......... Passed 1.18 sec
Start 33: waves/tests/mat2/reflex.py
26/34 Test #29: waves/tests/mat1/pulse.py .............. Passed 1.00 sec
Start 34: waves/tests/mat2/sinsrc.py
27/34 Test #23: heat/tests/periodic/honeycomb.py ....... Passed 1.86 sec
28/34 Test #30: waves/tests/mat1/sinsrc.py .............***Exception: SegFault 0.90 sec
[findbins] looking for linux/mingw libs
[findbins] loading /builds/am-dept/amfe-solvers/build/bin/fwkw.py
* OMP environment:
* MKL environment:
MKL_THREADING_LAYER = GNU
MKL_INTERFACE_LAYER = LP64
MKL_NUM_THREADS = 1
MKL_DOMAIN_NUM_THREADS = MKL_DOMAIN_ALL=1
MKL_DYNAMIC = FALSE
* KMP environment:
dir1= /builds/am-dept/amfe-solvers/ext/amfe/
testname= /builds/am-dept/amfe-solvers/waves/tests/mat1/sinsrc.py
creating workspace/waves_tests_mat1_sinsrc
[run.py] __file__ /builds/am-dept/amfe-solvers/waves/tests/mat1/sinsrc.py
--------------------------------------------------------------------------------
[1;34mPyStarting...[0m
starting test /builds/am-dept/amfe-solvers/waves/tests/mat1/sinsrc.py
time: Thu Sep 5 10:01:32 2024
hostname: runner-fyn-eywp-project-2918-concurrent-0
[<class 'tbox.gmsh.MeshLoader'>] processing /builds/am-dept/amfe-solvers/waves/models/cube.geo
[<class 'tbox.gmsh.MeshLoader'>] running gmsh on "/builds/am-dept/amfe-solvers/waves/models/cube.geo"...
[gmsh-out] b"Info : Running 'gmsh -3 -format msh2 -setnumber Lx 10.0 -setnumber Ly 10.0 -setnumber Nx 50 -setnumber Ny 50 -o cube.msh /builds/am-dept/amfe-solvers/waves/models/cube.geo' [Gmsh 4.13.1, 1 node, max. 1 thread]"
[gmsh-out] b'Info : Started on Thu Sep 5 10:01:32 2024'
[gmsh-out] b"Info : Reading '/builds/am-dept/amfe-solvers/waves/models/cube.geo'..."
[gmsh-out] b"Info : Done reading '/builds/am-dept/amfe-solvers/waves/models/cube.geo'"
[gmsh-out] b'Info : Meshing 1D...'
[gmsh-out] b'Info : [ 0%] Meshing curve 1 (Line)'
[gmsh-out] b'Info : [ 10%] Meshing curve 2 (Line)'
[gmsh-out] b'Info : [ 20%] Meshing curve 3 (Line)'
[gmsh-out] b'Info : [ 30%] Meshing curve 4 (Line)'
[gmsh-out] b'Info : [ 40%] Meshing curve 8 (Extruded)'
[gmsh-out] b'Info : [ 50%] Meshing curve 9 (Extruded)'
[gmsh-out] b'Info : [ 60%] Meshing curve 10 (Extruded)'
[gmsh-out] b'Info : [ 60%] Meshing curve 11 (Extruded)'
[gmsh-out] b'Info : [ 70%] Meshing curve 13 (Extruded)'
[gmsh-out] b'Info : [ 80%] Meshing curve 14 (Extruded)'
[gmsh-out] b'Info : [ 90%] Meshing curve 18 (Extruded)'
[gmsh-out] b'Info : [100%] Meshing curve 22 (Extruded)'
[gmsh-out] b'Info : Done meshing 1D (Wall 0.000187326s, CPU 0.002531s)'
[gmsh-out] b'Info : Meshing 2D...'
[gmsh-out] b'Info : [ 0%] Meshing surface 6 (Transfinite)'
[gmsh-out] b'Info : [ 20%] Meshing surface 15 (Extruded)'
[gmsh-out] b'Info : [ 40%] Meshing surface 19 (Extruded)'
[gmsh-out] b'Info : [ 60%] Meshing surface 23 (Extruded)'
[gmsh-out] b'Info : [ 70%] Meshing surface 27 (Extruded)'
[gmsh-out] b'Info : [ 90%] Meshing surface 28 (Extruded)'
[gmsh-out] b'Info : Done meshing 2D (Wall 0.00405762s, CPU 0.009075s)'
[gmsh-out] b'Info : Meshing 3D...'
[gmsh-out] b'Info : Meshing volume 1 (Extruded)'
[gmsh-out] b'Info : Done meshing 3D (Wall 0.0124077s, CPU 0.057488s)'
[gmsh-out] b'Info : Optimizing mesh...'
[gmsh-out] b'Info : Done optimizing mesh (Wall 3.58381e-05s, CPU 0.000131s)'
[gmsh-out] b'Info : 5202 nodes 8112 elements'
[gmsh-out] b"Info : Writing 'cube.msh'..."
[gmsh-out] b"Info : Done writing 'cube.msh'"
[gmsh-out] b'Info : Stopped on Thu Sep 5 10:01:32 2024 (From start: Wall 0.108493s, CPU 0.120275s)'
reading file cube.msh...
setting mesh name to "cube"
reading .msh format 2.2
counted 5202 nodes
counted 7704 elements
done
~GmshImport()
ForwardEuler
ttot = 1
dt = 0.004
savefreq = 5
ForwardEuler
ttot = 1
dt = 0.004
savefreq = 5
building K/M (TBB/lambda) using 1 threads...
processing Medium on Tag #1 (3D) named "Volume" (2500 elements) HEX8:2500 with c=10
S (5202,5202) nnz=91204
[cpu] usr:0.01s kern:0.00s real:0.01s
[cpu:buildKM] usr:0.01s kern:0.00s real:0.01s
building S (TBB/lambda) using 1 threads...
processing Boundary on Tag #5 (2D) named "FaceX1" (50 elements) QUAD4:50
normal=1
0
0
processing Boundary on Tag #6 (2D) named "FaceY1" (50 elements) QUAD4:50
normal= 0
1
-0
S (5202,5202) nnz=1204
[cpu] usr:0.01s kern:0.00s real:0.01s
Time integration...
ForwardEuler
ttot = 1
dt = 0.004
savefreq = 5
[cpu] usr:0.03s kern:0.00s real:0.03s
~ForwardEuler()
~Problem()
still 1 source(s) remaining.
Source on Tag #8 (1D) named "Line1" (1 elements) LINE2:1 (2 nodes) (use_count=3)
~Boundary()
~Boundary()
~Medium()
~GmshExport()
[runner-fyn-eywp-project-2918-concurrent-0:01391] *** Process received signal ***
[runner-fyn-eywp-project-2918-concurrent-0:01391] Signal: Segmentation fault (11)
[runner-fyn-eywp-project-2918-concurrent-0:01391] Signal code: Address not mapped (1)
[runner-fyn-eywp-project-2918-concurrent-0:01391] Failing at address: 0x7f306e80d5da
29/34 Test #32: waves/tests/mat2/pulse.py .............. Passed 0.90 sec
30/34 Test #31: waves/tests/mat2/interf1.py ............ Passed 1.11 sec
31/34 Test #33: waves/tests/mat2/reflex.py ............. Passed 0.95 sec
32/34 Test #34: waves/tests/mat2/sinsrc.py ............. Passed 0.76 sec
33/34 Test #20: heat/tests/fe2/heat_mpi.py ............. Passed 4.88 sec
34/34 Test #19: heat/tests/fe2/Lmpi.py ................. Passed 5.74 sec
91% tests passed, 3 tests failed out of 34
Total Test time (real) = 7.05 sec
The following tests FAILED:
11 - heat/tests/basics/dirichletx.py (SEGFAULT)
12 - heat/tests/basics/dirichletx_stru.py (SEGFAULT)
30 - waves/tests/mat1/sinsrc.py (SEGFAULT)
Errors while running CTest
section_end:1725530496:step_script
[0Ksection_start:1725530496:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1725530496:cleanup_file_variables
[0K[31;1mERROR: Job failed: exit code 1
[0;m