From 3fde6778a76caf5688edf41f29c293f5a5b88477 Mon Sep 17 00:00:00 2001 From: Beliy Nikita <beliy.nikita@outlook.com> Date: Tue, 5 May 2020 16:12:39 +0200 Subject: [PATCH] updated maps --- example1/resources/map/bidsmap.yaml | 55 ++++-------------- example1/resources/map/bidsmap_noPlugin.yaml | 61 +++++--------------- 2 files changed, 26 insertions(+), 90 deletions(-) diff --git a/example1/resources/map/bidsmap.yaml b/example1/resources/map/bidsmap.yaml index 89395f4..6a19b29 100644 --- a/example1/resources/map/bidsmap.yaml +++ b/example1/resources/map/bidsmap.yaml @@ -40,15 +40,10 @@ MRI: - echo: ~ json: !!omap - TaskName: <<bids:task>> - - Instructions: "" - - TaskDescription: "" - - CogAtlasID: "" - - CogPOID: "" - RepetitionTime: <time3:RepetitionTime> - - NumberOfVolumesDiscardedByScanner: "" - - NumberOfVolumesDiscardedByUser: "" + - NumberOfVolumesDiscardedByScanner: 0 + - NumberOfVolumesDiscardedByUser: 0 - DelayTime: 0 - - DelayAfterTrigger: "" - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-HCL/MRI/006-cmrr_mbep2d_bold_mb2_invertpe/f1904-0006-00001-000001-01.nii example: func/sub-003_ses-HCL_task-rest_dir-PA_run-1_bold checked: true @@ -67,15 +62,10 @@ MRI: - echo: ~ json: !!omap - TaskName: <<bids:task>> - - Instructions: "" - - TaskDescription: "" - - CogAtlasID: "" - - CogPOID: "" - RepetitionTime: <time3:RepetitionTime> - - NumberOfVolumesDiscardedByScanner: "" - - NumberOfVolumesDiscardedByUser: "" + - NumberOfVolumesDiscardedByScanner: 0 + - NumberOfVolumesDiscardedByUser: 0 - DelayTime: 0 - - DelayAfterTrigger: "" - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-HCL/MRI/004-cmrr_mbep2d_bold_mb2_task_fat/f1904-0004-00001-000001-01.nii example: func/sub-003_ses-HCL_task-nBack_dir-AP_run-1_bold checked: true @@ -93,15 +83,10 @@ MRI: - echo: ~ json: !!omap - TaskName: <<bids:task>> - - Instructions: "" - - TaskDescription: "" - - CogAtlasID: "" - - CogPOID: "" - RepetitionTime: <time3:RepetitionTime> - - NumberOfVolumesDiscardedByScanner: "" - - NumberOfVolumesDiscardedByUser: "" + - NumberOfVolumesDiscardedByScanner: 0 + - NumberOfVolumesDiscardedByUser: 0 - DelayTime: 0 - - DelayAfterTrigger: "" - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-HCL/MRI/008-cmrr_mbep2d_bold_mb2_rest/f1904-0008-00001-000001-01.nii example: func/sub-003_ses-HCL_task-rest_dir-AP_run-1_bold checked: true @@ -119,15 +104,10 @@ MRI: - echo: ~ json: !!omap - TaskName: <<bids:task>> - - Instructions: "" - - TaskDescription: "" - - CogAtlasID: "" - - CogPOID: "" - RepetitionTime: <time3:RepetitionTime> - - NumberOfVolumesDiscardedByScanner: "" - - NumberOfVolumesDiscardedByUser: "" + - NumberOfVolumesDiscardedByScanner: 0 + - NumberOfVolumesDiscardedByUser: 0 - DelayTime: 0 - - DelayAfterTrigger: "" - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-LCL/MRI/004-cmrr_mbep2d_bold_mb2_task_nfat/f1894-0004-00001-000001-01.nii example: func/sub-003_ses-LCL_task-nBack_dir-AP_run-1_bold checked: true @@ -145,15 +125,10 @@ MRI: - echo: ~ json: !!omap - TaskName: <<bids:task>> - - Instructions: "" - - TaskDescription: "" - - CogAtlasID: "" - - CogPOID: "" - RepetitionTime: <time3:RepetitionTime> - - NumberOfVolumesDiscardedByScanner: "" - - NumberOfVolumesDiscardedByUser: "" + - NumberOfVolumesDiscardedByScanner: 0 + - NumberOfVolumesDiscardedByUser: 0 - DelayTime: 0 - - DelayAfterTrigger: "" fmap: - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-HCL/MRI/010-gre_field_mapping/s1904-0010-00001-000001-01.nii example: fmap/sub-003_ses-HCL_magnitude1 @@ -374,8 +349,7 @@ MRI: - rec: ~ - run: ~ - mod: ~ - json: !!omap - - ContrastBolusIngredient: ~ + json: !!omap [] - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-LCL/MRI/013-t2_spc_da-fl_sag_p2_iso/s1894-0013-00001-000192-01.nii example: anat/sub-003_ses-LCL_FLAIR checked: true @@ -388,8 +362,7 @@ MRI: - rec: ~ - run: ~ - mod: ~ - json: !!omap - - ContrastBolusIngredient: ~ + json: !!omap [] - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/004-al_mtflash3d_PDw/s1905-0004-00001-000176-01.nii example: anat/sub-003_ses-STROOP_acq-PDw_part-mag_echo-1_MPM checked: true @@ -407,7 +380,6 @@ MRI: - mod: ~ json: !!omap - MTState: "Off" - - ContrastBolusIngredient: ~ - EchoTime: <time3:EchoTime> - RepetitionTime: <time3:RepetitionTime> - FlipAngle: <FlipAngle> @@ -445,7 +417,6 @@ MRI: - mod: ~ json: !!omap - MTState: "On" - - ContrastBolusIngredient: ~ - EchoTime: <time3:EchoTime> - RepetitionTime: <time3:RepetitionTime> - FlipAngle: <FlipAngle> @@ -466,7 +437,6 @@ MRI: - mod: ~ json: !!omap - MTState: "Off" - - ContrastBolusIngredient: ~ - EchoTime: <time3:EchoTime> - RepetitionTime: <time3:RepetitionTime> - FlipAngle: <FlipAngle> @@ -504,7 +474,6 @@ MRI: - mod: ~ json: !!omap - MTState: "On" - - ContrastBolusIngredient: ~ - EchoTime: <time3:EchoTime> - RepetitionTime: <time3:RepetitionTime> - FlipAngle: <FlipAngle> diff --git a/example1/resources/map/bidsmap_noPlugin.yaml b/example1/resources/map/bidsmap_noPlugin.yaml index af46be7..2ee3709 100644 --- a/example1/resources/map/bidsmap_noPlugin.yaml +++ b/example1/resources/map/bidsmap_noPlugin.yaml @@ -33,15 +33,10 @@ MRI: - echo: ~ json: !!omap - TaskName: <<bids:task>> - - Instructions: "" - - TaskDescription: "" - - CogAtlasID: "" - - CogPOID: "" - RepetitionTime: <time3:RepetitionTime> - - NumberOfVolumesDiscardedByScanner: "" - - NumberOfVolumesDiscardedByUser: "" + - NumberOfVolumesDiscardedByScanner: 0 + - NumberOfVolumesDiscardedByUser: 0 - DelayTime: 0 - - DelayAfterTrigger: "" - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-HCL/MRI/006-cmrr_mbep2d_bold_mb2_invertpe/f1904-0006-00001-000001-01.nii example: func/sub-003_ses-HCL_task-rest_dir-PA_run-1_bold checked: true @@ -60,15 +55,10 @@ MRI: - echo: ~ json: !!omap - TaskName: <<bids:task>> - - Instructions: "" - - TaskDescription: "" - - CogAtlasID: "" - - CogPOID: "" - RepetitionTime: <time3:RepetitionTime> - - NumberOfVolumesDiscardedByScanner: "" - - NumberOfVolumesDiscardedByUser: "" + - NumberOfVolumesDiscardedByScanner: 0 + - NumberOfVolumesDiscardedByUser: 0 - DelayTime: 0 - - DelayAfterTrigger: "" - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-HCL/MRI/004-cmrr_mbep2d_bold_mb2_task_fat/f1904-0004-00001-000001-01.nii example: func/sub-003_ses-HCL_task-nBack_dir-AP_run-1_bold checked: true @@ -86,15 +76,10 @@ MRI: - echo: ~ json: !!omap - TaskName: <<bids:task>> - - Instructions: "" - - TaskDescription: "" - - CogAtlasID: "" - - CogPOID: "" - RepetitionTime: <time3:RepetitionTime> - - NumberOfVolumesDiscardedByScanner: "" - - NumberOfVolumesDiscardedByUser: "" + - NumberOfVolumesDiscardedByScanner: 0 + - NumberOfVolumesDiscardedByUser: 0 - DelayTime: 0 - - DelayAfterTrigger: "" - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-HCL/MRI/008-cmrr_mbep2d_bold_mb2_rest/f1904-0008-00001-000001-01.nii example: func/sub-003_ses-HCL_task-rest_dir-AP_run-1_bold checked: true @@ -112,15 +97,10 @@ MRI: - echo: ~ json: !!omap - TaskName: <<bids:task>> - - Instructions: "" - - TaskDescription: "" - - CogAtlasID: "" - - CogPOID: "" - RepetitionTime: <time3:RepetitionTime> - - NumberOfVolumesDiscardedByScanner: "" - - NumberOfVolumesDiscardedByUser: "" + - NumberOfVolumesDiscardedByScanner: 0 + - NumberOfVolumesDiscardedByUser: 0 - DelayTime: 0 - - DelayAfterTrigger: "" - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-LCL/MRI/004-cmrr_mbep2d_bold_mb2_task_nfat/f1894-0004-00001-000001-01.nii example: func/sub-003_ses-LCL_task-nBack_dir-AP_run-1_bold checked: true @@ -138,15 +118,10 @@ MRI: - echo: ~ json: !!omap - TaskName: <<bids:task>> - - Instructions: "" - - TaskDescription: "" - - CogAtlasID: "" - - CogPOID: "" - RepetitionTime: <time3:RepetitionTime> - - NumberOfVolumesDiscardedByScanner: "" - - NumberOfVolumesDiscardedByUser: "" + - NumberOfVolumesDiscardedByScanner: 0 + - NumberOfVolumesDiscardedByUser: 0 - DelayTime: 0 - - DelayAfterTrigger: "" fmap: - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-HCL/MRI/010-gre_field_mapping/s1904-0010-00001-000001-01.nii example: fmap/sub-003_ses-HCL_magnitude1 @@ -367,8 +342,7 @@ MRI: - rec: ~ - run: ~ - mod: ~ - json: !!omap - - ContrastBolusIngredient: ~ + json: !!omap [] - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-LCL/MRI/013-t2_spc_da-fl_sag_p2_iso/s1894-0013-00001-000192-01.nii example: anat/sub-003_ses-LCL_FLAIR checked: true @@ -381,8 +355,7 @@ MRI: - rec: ~ - run: ~ - mod: ~ - json: !!omap - - ContrastBolusIngredient: ~ + json: !!omap [] - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/004-al_mtflash3d_PDw/s1905-0004-00001-000176-01.nii example: anat/sub-003_ses-STROOP_acq-PDw_part-mag_echo-1_MPM checked: true @@ -400,7 +373,6 @@ MRI: - mod: ~ json: !!omap - MTState: "Off" - - ContrastBolusIngredient: ~ - EchoTime: <time3:EchoTime> - RepetitionTime: <time3:RepetitionTime> - FlipAngle: <FlipAngle> @@ -419,8 +391,7 @@ MRI: - run: ~ - mod: ~ - echo: <EchoNumbers> - json: !!omap - - ContrastBolusIngredient: ~ + json: !!omap [] - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/012-al_mtflash3d_MTw/s1905-0012-00001-000176-01.nii example: anat/sub-003_ses-STROOP_acq-MTw_part-mag_echo-1_MPM checked: true @@ -438,7 +409,6 @@ MRI: - mod: ~ json: !!omap - MTState: "On" - - ContrastBolusIngredient: ~ - EchoTime: <time3:EchoTime> - RepetitionTime: <time3:RepetitionTime> - FlipAngle: <FlipAngle> @@ -459,7 +429,6 @@ MRI: - mod: ~ json: !!omap - MTState: "Off" - - ContrastBolusIngredient: ~ - EchoTime: <time3:EchoTime> - RepetitionTime: <time3:RepetitionTime> - FlipAngle: <FlipAngle> @@ -478,8 +447,7 @@ MRI: - run: ~ - mod: ~ - echo: <EchoNumbers> - json: !!omap - - ContrastBolusIngredient: ~ + json: !!omap [] - provenance: /home/beliy/Works/bidscoin/test/renamed/sub-003/ses-STROOP/MRI/013-al_mtflash3d_MTw/s1905-0013-00001-000176-01.nii example: anat/sub-003_ses-STROOP_acq-MTw_part-phase_echo-1_MPM checked: true @@ -497,7 +465,6 @@ MRI: - mod: ~ json: !!omap - MTState: "On" - - ContrastBolusIngredient: ~ - EchoTime: <time3:EchoTime> - RepetitionTime: <time3:RepetitionTime> - FlipAngle: <FlipAngle> -- GitLab