From 2ae38030e753ddc76a604fec0bea990242971baf Mon Sep 17 00:00:00 2001 From: Beliy Nikita <beliy.nikita@uliege.be> Date: Wed, 5 Feb 2020 11:08:31 +0100 Subject: [PATCH] copied and renamed --- example1/source/002/s01558/inp/FCsepNBack.tsv | 576 ++++++------- example1/source/002/s01558/inp/VAS.tsv | 14 +- .../nii/f1558-0002-00001-000001-01.json | 192 ++--- .../s01558/nii/f1558-0002-00001-000001-01.nii | 2 +- .../nii/f1558-0002-00002-000002-01.json | 192 ++--- .../s01558/nii/f1558-0002-00002-000002-01.nii | 2 +- .../nii/f1558-0002-00003-000003-01.json | 192 ++--- .../s01558/nii/f1558-0002-00003-000003-01.nii | 2 +- .../nii/f1558-0002-00004-000004-01.json | 192 ++--- .../s01558/nii/f1558-0002-00004-000004-01.nii | 2 +- .../nii/f1558-0002-00005-000005-01.json | 192 ++--- .../s01558/nii/f1558-0002-00005-000005-01.nii | 2 +- .../nii/f1558-0004-00001-000001-01.json | 202 ++--- .../s01558/nii/f1558-0004-00001-000001-01.nii | 2 +- .../nii/f1558-0004-00002-000002-01.json | 202 ++--- .../s01558/nii/f1558-0004-00002-000002-01.nii | 2 +- .../nii/f1558-0004-00003-000003-01.json | 202 ++--- .../s01558/nii/f1558-0004-00003-000003-01.nii | 2 +- .../nii/f1558-0004-00004-000004-01.json | 202 ++--- .../s01558/nii/f1558-0004-00004-000004-01.nii | 2 +- .../nii/f1558-0004-00005-000005-01.json | 202 ++--- .../s01558/nii/f1558-0004-00005-000005-01.nii | 2 +- .../nii/f1558-0006-00001-000001-01.json | 194 ++--- .../s01558/nii/f1558-0006-00001-000001-01.nii | 2 +- .../nii/f1558-0006-00002-000002-01.json | 194 ++--- .../s01558/nii/f1558-0006-00002-000002-01.nii | 2 +- .../nii/f1558-0006-00003-000003-01.json | 194 ++--- .../s01558/nii/f1558-0006-00003-000003-01.nii | 2 +- .../nii/f1558-0006-00004-000004-01.json | 194 ++--- .../s01558/nii/f1558-0006-00004-000004-01.nii | 2 +- .../nii/f1558-0006-00005-000005-01.json | 194 ++--- .../s01558/nii/f1558-0006-00005-000005-01.nii | 2 +- .../nii/f1558-0008-00001-000001-01.json | 196 ++--- .../s01558/nii/f1558-0008-00001-000001-01.nii | 2 +- .../nii/f1558-0008-00002-000002-01.json | 196 ++--- .../s01558/nii/f1558-0008-00002-000002-01.nii | 2 +- .../nii/f1558-0008-00003-000003-01.json | 196 ++--- .../s01558/nii/f1558-0008-00003-000003-01.nii | 2 +- .../nii/f1558-0008-00004-000004-01.json | 196 ++--- .../s01558/nii/f1558-0008-00004-000004-01.nii | 2 +- .../nii/f1558-0008-00005-000005-01.json | 196 ++--- .../s01558/nii/f1558-0008-00005-000005-01.nii | 2 +- .../nii/f1558-0013-00001-000001-01.json | 761 ------------------ .../s01558/nii/f1558-0013-00001-000001-01.nii | 1 - .../nii/f1558-0013-00002-000002-01.json | 761 ------------------ .../s01558/nii/f1558-0013-00002-000002-01.nii | 1 - .../nii/f1558-0013-00003-000003-01.json | 761 ------------------ .../s01558/nii/f1558-0013-00003-000003-01.nii | 1 - .../nii/f1558-0013-00004-000004-01.json | 761 ------------------ .../s01558/nii/f1558-0013-00004-000004-01.nii | 1 - .../nii/f1558-0013-00005-000005-01.json | 761 ------------------ .../s01558/nii/f1558-0013-00005-000005-01.nii | 1 - .../nii/s1558-0001-00001-000001-01.json | 132 +-- .../s01558/nii/s1558-0001-00001-000001-01.nii | 2 +- .../nii/s1558-0001-00001-000002-01.json | 134 +-- .../s01558/nii/s1558-0001-00001-000002-01.nii | 2 +- .../nii/s1558-0001-00001-000003-01.json | 134 +-- .../s01558/nii/s1558-0001-00001-000003-01.nii | 2 +- .../nii/s1558-0010-00001-000001-01.json | 184 ++--- .../s01558/nii/s1558-0010-00001-000001-01.nii | 2 +- .../nii/s1558-0010-00001-000001-02.json | 184 ++--- .../s01558/nii/s1558-0010-00001-000001-02.nii | 2 +- .../nii/s1558-0011-00001-000001-02.json | 186 ++--- .../s01558/nii/s1558-0011-00001-000001-02.nii | 2 +- .../s01558/nii/s1558-0012-00001-000001-01.nii | 1 - ...1.json => s1558-0012-00001-000224-01.json} | 415 +++++----- .../s01558/nii/s1558-0012-00001-000224-01.nii | 1 + .../nii/s1558-0012-00002-000071-01.json | 744 ----------------- .../s01558/nii/s1558-0012-00002-000071-01.nii | 1 - .../nii/s1558-0012-00003-000141-01.json | 744 ----------------- .../s01558/nii/s1558-0012-00003-000141-01.nii | 1 - .../nii/s1558-0012-00004-000211-01.json | 744 ----------------- .../s01558/nii/s1558-0012-00004-000211-01.nii | 1 - .../nii/s1558-0012-00005-000281-01.json | 744 ----------------- .../s01558/nii/s1558-0012-00005-000281-01.nii | 1 - ...1.json => s1558-0013-00001-000192-01.json} | 443 +++++----- .../s01558/nii/s1558-0013-00001-000192-01.nii | 1 + .../s01558/nii/s1558-0014-00001-000001-01.nii | 1 - .../nii/s1558-0014-00002-000071-01.json | 745 ----------------- .../s01558/nii/s1558-0014-00002-000071-01.nii | 1 - .../nii/s1558-0014-00003-000141-01.json | 745 ----------------- .../s01558/nii/s1558-0014-00003-000141-01.nii | 1 - .../nii/s1558-0014-00004-000211-01.json | 745 ----------------- .../s01558/nii/s1558-0014-00004-000211-01.nii | 1 - .../nii/s1558-0014-00005-000281-01.json | 745 ----------------- .../s01558/nii/s1558-0014-00005-000281-01.nii | 1 - 86 files changed, 3177 insertions(+), 12975 deletions(-) delete mode 100644 example1/source/002/s01558/nii/f1558-0013-00001-000001-01.json delete mode 100644 example1/source/002/s01558/nii/f1558-0013-00001-000001-01.nii delete mode 100644 example1/source/002/s01558/nii/f1558-0013-00002-000002-01.json delete mode 100644 example1/source/002/s01558/nii/f1558-0013-00002-000002-01.nii delete mode 100644 example1/source/002/s01558/nii/f1558-0013-00003-000003-01.json delete mode 100644 example1/source/002/s01558/nii/f1558-0013-00003-000003-01.nii delete mode 100644 example1/source/002/s01558/nii/f1558-0013-00004-000004-01.json delete mode 100644 example1/source/002/s01558/nii/f1558-0013-00004-000004-01.nii delete mode 100644 example1/source/002/s01558/nii/f1558-0013-00005-000005-01.json delete mode 100644 example1/source/002/s01558/nii/f1558-0013-00005-000005-01.nii delete mode 100644 example1/source/002/s01558/nii/s1558-0012-00001-000001-01.nii rename example1/source/002/s01558/nii/{s1558-0012-00001-000001-01.json => s1558-0012-00001-000224-01.json} (58%) create mode 100644 example1/source/002/s01558/nii/s1558-0012-00001-000224-01.nii delete mode 100644 example1/source/002/s01558/nii/s1558-0012-00002-000071-01.json delete mode 100644 example1/source/002/s01558/nii/s1558-0012-00002-000071-01.nii delete mode 100644 example1/source/002/s01558/nii/s1558-0012-00003-000141-01.json delete mode 100644 example1/source/002/s01558/nii/s1558-0012-00003-000141-01.nii delete mode 100644 example1/source/002/s01558/nii/s1558-0012-00004-000211-01.json delete mode 100644 example1/source/002/s01558/nii/s1558-0012-00004-000211-01.nii delete mode 100644 example1/source/002/s01558/nii/s1558-0012-00005-000281-01.json delete mode 100644 example1/source/002/s01558/nii/s1558-0012-00005-000281-01.nii rename example1/source/002/s01558/nii/{s1558-0014-00001-000001-01.json => s1558-0013-00001-000192-01.json} (57%) create mode 100644 example1/source/002/s01558/nii/s1558-0013-00001-000192-01.nii delete mode 100644 example1/source/002/s01558/nii/s1558-0014-00001-000001-01.nii delete mode 100644 example1/source/002/s01558/nii/s1558-0014-00002-000071-01.json delete mode 100644 example1/source/002/s01558/nii/s1558-0014-00002-000071-01.nii delete mode 100644 example1/source/002/s01558/nii/s1558-0014-00003-000141-01.json delete mode 100644 example1/source/002/s01558/nii/s1558-0014-00003-000141-01.nii delete mode 100644 example1/source/002/s01558/nii/s1558-0014-00004-000211-01.json delete mode 100644 example1/source/002/s01558/nii/s1558-0014-00004-000211-01.nii delete mode 100644 example1/source/002/s01558/nii/s1558-0014-00005-000281-01.json delete mode 100644 example1/source/002/s01558/nii/s1558-0014-00005-000281-01.nii diff --git a/example1/source/002/s01558/inp/FCsepNBack.tsv b/example1/source/002/s01558/inp/FCsepNBack.tsv index c6bd705..eb88d82 100644 --- a/example1/source/002/s01558/inp/FCsepNBack.tsv +++ b/example1/source/002/s01558/inp/FCsepNBack.tsv @@ -1,289 +1,289 @@ onset duration response_time trial_type block value exp_value -18.053 1.70 n/a Test_1Back 1 n/a n/a -20.253 1.70 0.944 Test_1Back 1 n n -22.453 1.70 0.909 Test_1Back 1 c c -24.653 1.70 0.911 Test_1Back 1 n n -26.853 1.70 1.001 Test_1Back 1 c c -29.053 1.70 0.924 Test_1Back 1 n n -31.253 1.70 0.939 Test_1Back 1 c c -33.453 1.70 0.932 Test_1Back 1 n c -35.653 1.70 0.966 Test_1Back 1 n n -37.853 1.70 1.004 Test_1Back 1 n n -40.053 1.70 0.800 Test_1Back 1 n n -42.253 1.70 0.772 Test_1Back 1 c c -44.453 1.70 0.880 Test_1Back 1 c c -46.653 1.70 0.690 Test_1Back 1 c c -48.853 1.70 0.816 Test_1Back 1 n n -51.053 1.70 1.057 Test_1Back 1 c c -73.253 1.70 n/a Test_2Back 2 n/a n/a -75.453 1.70 n/a Test_2Back 2 n/a n/a -77.653 1.70 1.176 Test_2Back 2 c c -79.853 1.70 1.028 Test_2Back 2 n n -82.053 1.70 1.008 Test_2Back 2 n c -84.253 1.70 0.801 Test_2Back 2 c c -86.453 1.70 1.027 Test_2Back 2 n n -88.653 1.70 1.128 Test_2Back 2 n n -90.853 1.70 0.926 Test_2Back 2 c c -93.053 1.70 0.919 Test_2Back 2 n c -95.253 1.70 1.025 Test_2Back 2 n n -97.453 1.70 1.005 Test_2Back 2 c n -99.653 1.70 1.048 Test_2Back 2 n n -101.853 1.70 0.917 Test_2Back 2 c c -104.053 1.70 0.949 Test_2Back 2 c c -106.253 1.70 0.896 Test_2Back 2 c c -128.453 1.70 n/a Test_3Back 3 n/a n/a -130.653 1.70 n/a Test_3Back 3 n/a n/a -132.853 1.70 n/a Test_3Back 3 n/a n/a -135.053 1.70 1.095 Test_3Back 3 n n -137.253 1.70 1.298 Test_3Back 3 n n -139.453 1.70 1.194 Test_3Back 3 n n -141.653 1.70 1.237 Test_3Back 3 n n -143.853 1.70 1.193 Test_3Back 3 n n -146.053 1.70 1.088 Test_3Back 3 c c -148.253 1.70 1.016 Test_3Back 3 c c -150.453 1.70 1.137 Test_3Back 3 n n -152.653 1.70 1.117 Test_3Back 3 c c -154.853 1.70 1.067 Test_3Back 3 c c -157.053 1.70 1.001 Test_3Back 3 n n -159.253 1.70 1.125 Test_3Back 3 n n -161.453 1.70 1.345 Test_3Back 3 c c -183.653 1.70 n/a Test_1Back 4 n/a n/a -185.853 1.70 0.912 Test_1Back 4 n n -188.053 1.70 0.880 Test_1Back 4 c c -190.253 1.70 1.107 Test_1Back 4 c c -192.453 1.70 0.790 Test_1Back 4 n n -194.653 1.70 1.026 Test_1Back 4 n n -196.853 1.70 0.889 Test_1Back 4 c c -199.053 1.70 0.747 Test_1Back 4 c c -201.253 1.70 0.950 Test_1Back 4 c c -203.453 1.70 0.915 Test_1Back 4 c c -205.653 1.70 0.906 Test_1Back 4 n n -207.853 1.70 1.028 Test_1Back 4 n n -210.053 1.70 0.948 Test_1Back 4 c c -212.253 1.70 0.854 Test_1Back 4 n n -214.453 1.70 0.939 Test_1Back 4 n n -216.653 1.70 0.956 Test_1Back 4 c c -238.853 1.70 n/a Test_2Back 5 n/a n/a -241.053 1.70 n/a Test_2Back 5 n/a n/a -243.253 1.70 0.829 Test_2Back 5 c c -245.453 1.70 1.056 Test_2Back 5 n n -247.653 1.70 0.892 Test_2Back 5 n n -249.853 1.70 0.699 Test_2Back 5 c c -252.053 1.70 1.056 Test_2Back 5 c c -254.253 1.70 0.758 Test_2Back 5 c n -256.453 1.70 1.043 Test_2Back 5 n n -258.653 1.70 0.881 Test_2Back 5 n n -260.853 1.70 0.948 Test_2Back 5 c c -263.053 1.70 0.999 Test_2Back 5 c c -265.253 1.70 1.032 Test_2Back 5 n n -267.453 1.70 1.009 Test_2Back 5 n n -269.653 1.70 0.782 Test_2Back 5 n n -271.853 1.70 0.845 Test_2Back 5 c c -294.053 1.70 n/a Test_3Back 6 n/a n/a -296.253 1.70 n/a Test_3Back 6 n/a n/a -298.453 1.70 n/a Test_3Back 6 n/a n/a -300.653 1.70 1.081 Test_3Back 6 c c -302.853 1.70 1.129 Test_3Back 6 c c -305.053 1.70 1.234 Test_3Back 6 n n -307.253 1.70 1.191 Test_3Back 6 n n -309.453 1.70 1.069 Test_3Back 6 c c -311.653 1.70 0.981 Test_3Back 6 c c -313.853 1.70 1.077 Test_3Back 6 n n -316.053 1.70 1.031 Test_3Back 6 n n -318.253 1.70 0.930 Test_3Back 6 n n -320.453 1.70 1.043 Test_3Back 6 n n -322.653 1.70 1.020 Test_3Back 6 n n -324.853 1.70 1.006 Test_3Back 6 c c -327.053 1.70 1.180 Test_3Back 6 c c -349.253 1.70 n/a Test_1Back 7 n/a n/a -351.453 1.70 1.068 Test_1Back 7 c c -353.653 1.70 0.951 Test_1Back 7 n n -355.853 1.70 0.990 Test_1Back 7 n n -358.053 1.70 0.959 Test_1Back 7 c c -360.253 1.70 0.827 Test_1Back 7 n n -362.453 1.70 0.892 Test_1Back 7 n n -364.653 1.70 0.919 Test_1Back 7 c c -366.853 1.70 1.100 Test_1Back 7 c c -369.053 1.70 0.986 Test_1Back 7 c c -371.253 1.70 0.838 Test_1Back 7 n n -373.453 1.70 0.776 Test_1Back 7 c c -375.653 1.70 0.854 Test_1Back 7 n n -377.853 1.70 0.892 Test_1Back 7 c c -380.053 1.70 0.714 Test_1Back 7 n n -382.253 1.70 0.691 Test_1Back 7 n n -404.453 1.70 n/a Test_2Back 8 n/a n/a -406.653 1.70 n/a Test_2Back 8 n/a n/a -408.853 1.70 0.966 Test_2Back 8 c c -411.053 1.70 0.931 Test_2Back 8 c c -413.253 1.70 1.054 Test_2Back 8 c c -415.453 1.70 0.927 Test_2Back 8 c c -417.653 1.70 0.941 Test_2Back 8 c c -419.853 1.70 0.929 Test_2Back 8 n n -422.053 1.70 1.000 Test_2Back 8 c c -424.253 1.70 0.949 Test_2Back 8 c c -426.453 1.70 1.002 Test_2Back 8 n n -428.653 1.70 1.007 Test_2Back 8 c n -430.853 1.70 1.037 Test_2Back 8 n n -433.053 1.70 0.924 Test_2Back 8 n n -435.253 1.70 1.085 Test_2Back 8 n n -437.453 1.70 1.062 Test_2Back 8 c n -459.653 1.70 n/a Test_3Back 9 n/a n/a -461.853 1.70 n/a Test_3Back 9 n/a n/a -464.053 1.70 n/a Test_3Back 9 n/a n/a -466.253 1.70 1.091 Test_3Back 9 c c -468.453 1.70 1.027 Test_3Back 9 n n -470.653 1.70 1.028 Test_3Back 9 c c -472.853 1.70 1.180 Test_3Back 9 n n -475.053 1.70 1.145 Test_3Back 9 c c -477.253 1.70 0.867 Test_3Back 9 n n -479.453 1.70 1.045 Test_3Back 9 n n -481.653 1.70 0.983 Test_3Back 9 n n -483.853 1.70 1.205 Test_3Back 9 c c -486.053 1.70 1.205 Test_3Back 9 n n -488.253 1.70 1.058 Test_3Back 9 c c -490.453 1.70 1.216 Test_3Back 9 n n -492.653 1.70 1.124 Test_3Back 9 c c -514.853 1.70 n/a Test_1Back 10 n/a n/a -517.053 1.70 0.862 Test_1Back 10 n n -519.253 1.70 0.812 Test_1Back 10 n n -521.453 1.70 0.983 Test_1Back 10 c c -523.653 1.70 0.839 Test_1Back 10 n n -525.853 1.70 0.826 Test_1Back 10 c c -528.053 1.70 0.869 Test_1Back 10 n n -530.253 1.70 0.985 Test_1Back 10 c c -532.453 1.70 1.109 Test_1Back 10 c c -534.653 1.70 0.942 Test_1Back 10 n n -536.853 1.70 0.803 Test_1Back 10 n n -539.053 1.70 0.880 Test_1Back 10 c c -541.253 1.70 0.813 Test_1Back 10 n n -543.453 1.70 0.818 Test_1Back 10 n n -545.653 1.70 0.757 Test_1Back 10 n n -547.853 1.70 0.845 Test_1Back 10 n n -570.053 1.70 n/a Test_2Back 11 n/a n/a -572.253 1.70 n/a Test_2Back 11 n/a n/a -574.453 1.70 1.027 Test_2Back 11 c c -576.653 1.70 1.011 Test_2Back 11 n n -578.853 1.70 0.995 Test_2Back 11 c c -581.053 1.70 1.019 Test_2Back 11 n n -583.253 1.70 1.051 Test_2Back 11 n n -585.453 1.70 0.951 Test_2Back 11 c c -587.653 1.70 0.843 Test_2Back 11 n n -589.853 1.70 0.824 Test_2Back 11 n n -592.053 1.70 1.146 Test_2Back 11 c c -594.253 1.70 0.982 Test_2Back 11 c c -596.453 1.70 0.934 Test_2Back 11 c c -598.653 1.70 1.101 Test_2Back 11 n n -600.853 1.70 1.166 Test_2Back 11 c n -603.053 1.70 0.880 Test_2Back 11 n n -625.253 1.70 n/a Test_3Back 12 n/a n/a -627.453 1.70 n/a Test_3Back 12 n/a n/a -629.653 1.70 n/a Test_3Back 12 n/a n/a -631.853 1.70 1.364 Test_3Back 12 c c -634.053 1.70 1.116 Test_3Back 12 n n -636.253 1.70 1.100 Test_3Back 12 c c -638.453 1.70 1.149 Test_3Back 12 c c -640.653 1.70 0.956 Test_3Back 12 c c -642.853 1.70 1.097 Test_3Back 12 c c -645.053 1.70 0.918 Test_3Back 12 c c -647.253 1.70 1.170 Test_3Back 12 c c -649.453 1.70 0.909 Test_3Back 12 c c -651.653 1.70 0.943 Test_3Back 12 n n -653.853 1.70 1.044 Test_3Back 12 n n -656.053 1.70 1.002 Test_3Back 12 c c -658.253 1.70 1.023 Test_3Back 12 n n -680.453 1.70 n/a Test_1Back 13 n/a n/a -682.653 1.70 1.077 Test_1Back 13 n n -684.853 1.70 0.980 Test_1Back 13 n n -687.053 1.70 0.982 Test_1Back 13 c n -689.253 1.70 0.745 Test_1Back 13 n n -691.453 1.70 0.871 Test_1Back 13 c c -693.653 1.70 0.840 Test_1Back 13 n n -695.853 1.70 0.812 Test_1Back 13 n n -698.053 1.70 0.761 Test_1Back 13 c c -700.253 1.70 0.933 Test_1Back 13 n n -702.453 1.70 0.856 Test_1Back 13 n n -704.653 1.70 0.922 Test_1Back 13 c c -706.853 1.70 0.773 Test_1Back 13 c c -709.053 1.70 0.950 Test_1Back 13 c c -711.253 1.70 0.785 Test_1Back 13 c c -713.453 1.70 0.747 Test_1Back 13 c c -735.653 1.70 n/a Test_2Back 14 n/a n/a -737.853 1.70 n/a Test_2Back 14 n/a n/a -740.053 1.70 1.026 Test_2Back 14 n n -742.253 1.70 0.883 Test_2Back 14 n n -744.453 1.70 1.067 Test_2Back 14 n n -746.653 1.70 1.130 Test_2Back 14 c c -748.853 1.70 0.959 Test_2Back 14 c c -751.053 1.70 1.060 Test_2Back 14 c c -753.253 1.70 0.741 Test_2Back 14 n n -755.453 1.70 0.887 Test_2Back 14 n n -757.653 1.70 1.023 Test_2Back 14 n n -759.853 1.70 1.005 Test_2Back 14 c c -762.053 1.70 1.143 Test_2Back 14 c c -764.253 1.70 0.989 Test_2Back 14 n n -766.453 1.70 1.095 Test_2Back 14 n n -768.653 1.70 0.932 Test_2Back 14 n n -790.853 1.70 n/a Test_3Back 15 n/a n/a -793.053 1.70 n/a Test_3Back 15 n/a n/a -795.253 1.70 n/a Test_3Back 15 n/a n/a -797.453 1.70 1.177 Test_3Back 15 c c -799.653 1.70 0.959 Test_3Back 15 n n -801.853 1.70 1.030 Test_3Back 15 n n -804.053 1.70 0.944 Test_3Back 15 n n -806.253 1.70 1.137 Test_3Back 15 c n -808.453 1.70 1.020 Test_3Back 15 n n -810.653 1.70 1.109 Test_3Back 15 n c -812.853 1.70 1.134 Test_3Back 15 n n -815.053 1.70 1.116 Test_3Back 15 c c -817.253 1.70 1.127 Test_3Back 15 c c -819.453 1.70 1.015 Test_3Back 15 c n -821.653 1.70 0.934 Test_3Back 15 n n -823.853 1.70 0.972 Test_3Back 15 n n -846.053 1.70 n/a Test_1Back 16 n/a n/a -848.253 1.70 0.776 Test_1Back 16 n n -850.453 1.70 0.764 Test_1Back 16 n n -852.653 1.70 1.008 Test_1Back 16 c c -854.853 1.70 1.173 Test_1Back 16 n n -857.053 1.70 0.958 Test_1Back 16 n n -859.253 1.70 0.991 Test_1Back 16 n n -861.453 1.70 1.006 Test_1Back 16 n n -863.653 1.70 1.020 Test_1Back 16 c c -865.853 1.70 0.857 Test_1Back 16 c c -868.053 1.70 0.933 Test_1Back 16 c c -870.253 1.70 0.734 Test_1Back 16 n n -872.453 1.70 0.847 Test_1Back 16 n n -874.653 1.70 0.878 Test_1Back 16 n n -876.853 1.70 0.994 Test_1Back 16 n n -879.053 1.70 0.930 Test_1Back 16 n n -901.253 1.70 n/a Test_2Back 17 n/a n/a -903.453 1.70 n/a Test_2Back 17 n/a n/a -905.653 1.70 1.094 Test_2Back 17 n n -907.853 1.70 1.017 Test_2Back 17 n n -910.053 1.70 0.859 Test_2Back 17 c c -912.253 1.70 1.091 Test_2Back 17 n n -914.453 1.70 0.991 Test_2Back 17 c c -916.653 1.70 0.922 Test_2Back 17 n n -918.853 1.70 0.986 Test_2Back 17 c c -921.053 1.70 1.028 Test_2Back 17 c c -923.253 1.70 0.986 Test_2Back 17 n n -925.453 1.70 0.955 Test_2Back 17 c c -927.653 1.70 0.854 Test_2Back 17 n n -929.853 1.70 1.210 Test_2Back 17 c n -932.053 1.70 0.979 Test_2Back 17 n n -934.253 1.70 0.863 Test_2Back 17 n n -956.453 1.70 n/a Test_3Back 18 n/a n/a -958.653 1.70 n/a Test_3Back 18 n/a n/a -960.853 1.70 n/a Test_3Back 18 n/a n/a -963.053 1.70 0.902 Test_3Back 18 c c -965.253 1.70 0.976 Test_3Back 18 n n -967.453 1.70 1.061 Test_3Back 18 c c -969.653 1.70 1.006 Test_3Back 18 c c -971.853 1.70 1.059 Test_3Back 18 c n -974.053 1.70 0.716 Test_3Back 18 c c -976.253 1.70 1.153 Test_3Back 18 c c -978.453 1.70 1.129 Test_3Back 18 c c -980.653 1.70 1.009 Test_3Back 18 c c -982.853 1.70 0.946 Test_3Back 18 n n -985.053 1.70 1.204 Test_3Back 18 c c -987.253 1.70 1.110 Test_3Back 18 c n -989.453 1.70 1.141 Test_3Back 18 c c +16.942 1.70 n/a Test_1Back 1 n/a n/a +19.142 1.70 0.859 Test_1Back 1 c c +21.342 1.70 0.872 Test_1Back 1 n n +23.542 1.70 0.919 Test_1Back 1 c c +25.742 1.70 0.988 Test_1Back 1 n n +27.942 1.70 0.910 Test_1Back 1 n n +30.142 1.70 0.956 Test_1Back 1 n n +32.342 1.70 0.777 Test_1Back 1 n n +34.542 1.70 0.890 Test_1Back 1 n n +36.742 1.70 1.001 Test_1Back 1 n n +38.942 1.70 0.894 Test_1Back 1 c c +41.142 1.70 0.860 Test_1Back 1 n c +43.342 1.70 1.008 Test_1Back 1 n n +45.542 1.70 0.628 Test_1Back 1 n n +47.742 1.70 0.991 Test_1Back 1 c c +49.942 1.70 0.907 Test_1Back 1 c c +72.142 1.70 n/a Test_2Back 2 n/a n/a +74.342 1.70 n/a Test_2Back 2 n/a n/a +76.542 1.70 0.970 Test_2Back 2 c c +78.742 1.70 1.039 Test_2Back 2 n n +80.942 1.70 0.874 Test_2Back 2 n n +83.142 1.70 1.188 Test_2Back 2 c c +85.342 1.70 1.135 Test_2Back 2 n n +87.542 1.70 0.868 Test_2Back 2 c c +89.742 1.70 0.911 Test_2Back 2 n n +91.942 1.70 1.126 Test_2Back 2 n n +94.142 1.70 0.970 Test_2Back 2 c c +96.342 1.70 0.959 Test_2Back 2 c c +98.542 1.70 0.906 Test_2Back 2 c c +100.742 1.70 0.893 Test_2Back 2 n n +102.942 1.70 1.143 Test_2Back 2 c c +105.142 1.70 1.124 Test_2Back 2 c c +127.342 1.70 n/a Test_3Back 3 n/a n/a +129.542 1.70 n/a Test_3Back 3 n/a n/a +131.742 1.70 n/a Test_3Back 3 n/a n/a +133.942 1.70 1.009 Test_3Back 3 c c +136.142 1.70 1.221 Test_3Back 3 n n +138.342 1.70 1.198 Test_3Back 3 n n +140.542 1.70 0.991 Test_3Back 3 c c +142.742 1.70 1.019 Test_3Back 3 n n +144.942 1.70 1.099 Test_3Back 3 c c +147.142 1.70 0.975 Test_3Back 3 c c +149.342 1.70 1.113 Test_3Back 3 n n +151.542 1.70 1.031 Test_3Back 3 c c +153.742 1.70 1.033 Test_3Back 3 n n +155.942 1.70 1.143 Test_3Back 3 n n +158.142 1.70 1.197 Test_3Back 3 c c +160.342 1.70 1.039 Test_3Back 3 c c +182.542 1.70 n/a Test_1Back 4 n/a n/a +184.742 1.70 0.827 Test_1Back 4 n n +186.942 1.70 0.847 Test_1Back 4 c c +189.142 1.70 1.075 Test_1Back 4 n n +191.342 1.70 0.999 Test_1Back 4 c c +193.542 1.70 0.928 Test_1Back 4 n n +195.742 1.70 0.914 Test_1Back 4 n n +197.942 1.70 0.953 Test_1Back 4 n n +200.142 1.70 0.889 Test_1Back 4 n n +202.342 1.70 0.980 Test_1Back 4 c c +204.542 1.70 1.042 Test_1Back 4 c c +206.742 1.70 0.905 Test_1Back 4 n n +208.942 1.70 1.013 Test_1Back 4 n n +211.142 1.70 0.936 Test_1Back 4 n n +213.342 1.70 1.073 Test_1Back 4 n n +215.542 1.70 0.896 Test_1Back 4 c c +237.742 1.70 n/a Test_2Back 5 n/a n/a +239.942 1.70 n/a Test_2Back 5 n/a n/a +242.142 1.70 1.037 Test_2Back 5 c c +244.342 1.70 1.052 Test_2Back 5 c c +246.542 1.70 0.805 Test_2Back 5 c c +248.742 1.70 0.882 Test_2Back 5 c c +250.942 1.70 1.061 Test_2Back 5 n n +253.142 1.70 0.726 Test_2Back 5 c c +255.342 1.70 1.145 Test_2Back 5 c c +257.542 1.70 1.057 Test_2Back 5 n n +259.742 1.70 0.946 Test_2Back 5 c c +261.942 1.70 0.955 Test_2Back 5 c c +264.142 1.70 1.030 Test_2Back 5 n n +266.342 1.70 0.967 Test_2Back 5 n n +268.542 1.70 1.021 Test_2Back 5 n n +270.742 1.70 0.915 Test_2Back 5 n c +292.942 1.70 n/a Test_3Back 6 n/a n/a +295.142 1.70 n/a Test_3Back 6 n/a n/a +297.342 1.70 n/a Test_3Back 6 n/a n/a +299.542 1.70 1.125 Test_3Back 6 c c +301.742 1.70 1.020 Test_3Back 6 n n +303.942 1.70 1.231 Test_3Back 6 c c +306.142 1.70 1.089 Test_3Back 6 n n +308.342 1.70 1.131 Test_3Back 6 c c +310.542 1.70 0.927 Test_3Back 6 n n +312.742 1.70 1.268 Test_3Back 6 n n +314.942 1.70 1.223 Test_3Back 6 n n +317.142 1.70 1.260 Test_3Back 6 n n +319.342 1.70 0.933 Test_3Back 6 c c +321.542 1.70 1.072 Test_3Back 6 c c +323.742 1.70 1.025 Test_3Back 6 n c +325.942 1.70 1.190 Test_3Back 6 c c +348.142 1.70 n/a Test_1Back 7 n/a n/a +350.342 1.70 0.814 Test_1Back 7 n n +352.542 1.70 0.952 Test_1Back 7 n n +354.742 1.70 0.827 Test_1Back 7 n n +356.942 1.70 0.798 Test_1Back 7 n n +359.142 1.70 0.929 Test_1Back 7 c c +361.342 1.70 0.743 Test_1Back 7 c c +363.542 1.70 1.113 Test_1Back 7 n n +365.742 1.70 0.930 Test_1Back 7 n n +367.942 1.70 0.896 Test_1Back 7 c c +370.142 1.70 0.799 Test_1Back 7 n n +372.342 1.70 0.914 Test_1Back 7 c c +374.542 1.70 0.955 Test_1Back 7 n n +376.742 1.70 0.984 Test_1Back 7 n n +378.942 1.70 0.857 Test_1Back 7 n n +381.142 1.70 0.949 Test_1Back 7 n n +403.342 1.70 n/a Test_2Back 8 n/a n/a +405.542 1.70 n/a Test_2Back 8 n/a n/a +407.742 1.70 1.086 Test_2Back 8 c c +409.942 1.70 0.978 Test_2Back 8 c c +412.142 1.70 1.021 Test_2Back 8 c c +414.342 1.70 1.152 Test_2Back 8 c c +416.542 1.70 1.125 Test_2Back 8 n c +418.742 1.70 0.962 Test_2Back 8 c c +420.942 1.70 1.023 Test_2Back 8 n n +423.142 1.70 1.010 Test_2Back 8 c n +425.342 1.70 0.947 Test_2Back 8 c c +427.542 1.70 1.075 Test_2Back 8 c c +429.742 1.70 1.178 Test_2Back 8 c c +431.942 1.70 1.162 Test_2Back 8 c c +434.142 1.70 1.286 Test_2Back 8 c c +436.342 1.70 1.093 Test_2Back 8 c c +458.542 1.70 n/a Test_3Back 9 n/a n/a +460.742 1.70 n/a Test_3Back 9 n/a n/a +462.942 1.70 n/a Test_3Back 9 n/a n/a +465.142 1.70 1.031 Test_3Back 9 c c +467.342 1.70 1.277 Test_3Back 9 c c +469.542 1.70 0.888 Test_3Back 9 n n +471.742 1.70 1.185 Test_3Back 9 c c +473.942 1.70 1.172 Test_3Back 9 n n +476.142 1.70 1.312 Test_3Back 9 c c +478.342 1.70 1.016 Test_3Back 9 c c +480.542 1.70 0.923 Test_3Back 9 n n +482.742 1.70 1.099 Test_3Back 9 c c +484.942 1.70 1.119 Test_3Back 9 n n +487.142 1.70 0.974 Test_3Back 9 c c +489.342 1.70 1.210 Test_3Back 9 n n +491.542 1.70 1.125 Test_3Back 9 n n +513.742 1.70 n/a Test_1Back 10 n/a n/a +515.942 1.70 0.744 Test_1Back 10 c c +518.142 1.70 0.863 Test_1Back 10 c c +520.342 1.70 0.974 Test_1Back 10 n n +522.542 1.70 0.902 Test_1Back 10 n n +524.742 1.70 0.956 Test_1Back 10 c c +526.942 1.70 0.938 Test_1Back 10 n n +529.142 1.70 0.804 Test_1Back 10 c c +531.342 1.70 0.906 Test_1Back 10 n n +533.542 1.70 1.049 Test_1Back 10 c c +535.742 1.70 0.973 Test_1Back 10 c c +537.942 1.70 1.012 Test_1Back 10 n n +540.142 1.70 0.937 Test_1Back 10 n n +542.342 1.70 0.969 Test_1Back 10 n n +544.542 1.70 0.907 Test_1Back 10 c c +546.742 1.70 0.863 Test_1Back 10 n n +568.942 1.70 n/a Test_2Back 11 n/a n/a +571.142 1.70 n/a Test_2Back 11 n/a n/a +573.342 1.70 0.944 Test_2Back 11 c c +575.542 1.70 0.985 Test_2Back 11 c c +577.742 1.70 1.111 Test_2Back 11 n n +579.942 1.70 1.091 Test_2Back 11 n n +582.142 1.70 0.998 Test_2Back 11 n n +584.342 1.70 1.115 Test_2Back 11 c c +586.542 1.70 1.070 Test_2Back 11 n n +588.742 1.70 1.041 Test_2Back 11 n n +590.942 1.70 0.927 Test_2Back 11 n n +593.142 1.70 1.078 Test_2Back 11 n c +595.342 1.70 1.125 Test_2Back 11 n n +597.542 1.70 0.982 Test_2Back 11 c c +599.742 1.70 0.972 Test_2Back 11 n n +601.942 1.70 0.933 Test_2Back 11 c n +624.142 1.70 n/a Test_3Back 12 n/a n/a +626.342 1.70 n/a Test_3Back 12 n/a n/a +628.542 1.70 n/a Test_3Back 12 n/a n/a +630.742 1.70 1.067 Test_3Back 12 c c +632.942 1.70 1.061 Test_3Back 12 n n +635.142 1.70 1.127 Test_3Back 12 n n +637.342 1.70 1.259 Test_3Back 12 c c +639.542 1.70 1.105 Test_3Back 12 c c +641.742 1.70 1.111 Test_3Back 12 c c +643.942 1.70 1.128 Test_3Back 12 n n +646.142 1.70 0.985 Test_3Back 12 c c +648.342 1.70 1.095 Test_3Back 12 c c +650.542 1.70 1.186 Test_3Back 12 n n +652.742 1.70 1.088 Test_3Back 12 n n +654.942 1.70 1.263 Test_3Back 12 n n +657.142 1.70 1.186 Test_3Back 12 n n +679.342 1.70 n/a Test_1Back 13 n/a n/a +681.542 1.70 0.864 Test_1Back 13 c c +683.742 1.70 0.713 Test_1Back 13 c c +685.942 1.70 0.993 Test_1Back 13 c n +688.142 1.70 0.890 Test_1Back 13 n n +690.342 1.70 0.775 Test_1Back 13 c c +692.542 1.70 0.862 Test_1Back 13 n c +694.742 1.70 0.764 Test_1Back 13 n n +696.942 1.70 0.801 Test_1Back 13 c c +699.142 1.70 1.153 Test_1Back 13 c c +701.342 1.70 1.037 Test_1Back 13 c c +703.542 1.70 0.912 Test_1Back 13 c n +705.742 1.70 0.798 Test_1Back 13 n n +707.942 1.70 1.096 Test_1Back 13 n n +710.142 1.70 0.896 Test_1Back 13 c c +712.342 1.70 0.928 Test_1Back 13 n n +734.542 1.70 n/a Test_2Back 14 n/a n/a +736.742 1.70 n/a Test_2Back 14 n/a n/a +738.942 1.70 1.043 Test_2Back 14 c c +741.142 1.70 1.036 Test_2Back 14 n n +743.342 1.70 1.129 Test_2Back 14 c c +745.542 1.70 1.056 Test_2Back 14 c c +747.742 1.70 0.943 Test_2Back 14 c c +749.942 1.70 1.035 Test_2Back 14 c c +752.142 1.70 1.037 Test_2Back 14 n n +754.342 1.70 0.962 Test_2Back 14 c c +756.542 1.70 1.107 Test_2Back 14 n n +758.742 1.70 1.039 Test_2Back 14 c c +760.942 1.70 0.931 Test_2Back 14 c c +763.142 1.70 0.926 Test_2Back 14 c c +765.342 1.70 0.909 Test_2Back 14 n n +767.542 1.70 0.988 Test_2Back 14 n n +789.742 1.70 n/a Test_3Back 15 n/a n/a +791.942 1.70 n/a Test_3Back 15 n/a n/a +794.142 1.70 n/a Test_3Back 15 n/a n/a +796.342 1.70 1.061 Test_3Back 15 c c +798.542 1.70 1.101 Test_3Back 15 n n +800.742 1.70 1.188 Test_3Back 15 c c +802.942 1.70 1.180 Test_3Back 15 n n +805.142 1.70 1.093 Test_3Back 15 c c +807.342 1.70 1.113 Test_3Back 15 n n +809.542 1.70 1.295 Test_3Back 15 c c +811.742 1.70 1.195 Test_3Back 15 c c +813.942 1.70 1.029 Test_3Back 15 n n +816.142 1.70 1.081 Test_3Back 15 c c +818.342 1.70 1.144 Test_3Back 15 n n +820.542 1.70 1.204 Test_3Back 15 c c +822.742 1.70 1.152 Test_3Back 15 n n +844.942 1.70 n/a Test_1Back 16 n/a n/a +847.142 1.70 0.780 Test_1Back 16 n n +849.342 1.70 0.740 Test_1Back 16 c n +851.542 1.70 0.729 Test_1Back 16 n n +853.742 1.70 0.862 Test_1Back 16 n n +855.942 1.70 0.954 Test_1Back 16 n n +858.142 1.70 0.562 Test_1Back 16 n n +860.342 1.70 0.903 Test_1Back 16 n n +862.542 1.70 0.799 Test_1Back 16 c c +864.742 1.70 0.867 Test_1Back 16 n n +866.942 1.70 0.978 Test_1Back 16 c c +869.142 1.70 0.915 Test_1Back 16 c n +871.342 1.70 0.905 Test_1Back 16 c c +873.542 1.70 0.903 Test_1Back 16 n n +875.742 1.70 0.923 Test_1Back 16 c c +877.942 1.70 0.872 Test_1Back 16 c c +900.142 1.70 n/a Test_2Back 17 n/a n/a +902.342 1.70 n/a Test_2Back 17 n/a n/a +904.542 1.70 0.870 Test_2Back 17 c c +906.742 1.70 0.926 Test_2Back 17 n n +908.942 1.70 1.065 Test_2Back 17 n n +911.142 1.70 0.997 Test_2Back 17 c c +913.342 1.70 0.925 Test_2Back 17 n n +915.542 1.70 1.087 Test_2Back 17 c c +917.742 1.70 0.898 Test_2Back 17 n n +919.942 1.70 1.036 Test_2Back 17 n n +922.142 1.70 0.957 Test_2Back 17 c c +924.342 1.70 0.913 Test_2Back 17 c c +926.542 1.70 1.050 Test_2Back 17 n n +928.742 1.70 1.018 Test_2Back 17 n c +930.942 1.70 0.832 Test_2Back 17 c c +933.142 1.70 0.916 Test_2Back 17 c c +955.342 1.70 n/a Test_3Back 18 n/a n/a +957.542 1.70 n/a Test_3Back 18 n/a n/a +959.742 1.70 n/a Test_3Back 18 n/a n/a +961.942 1.70 0.990 Test_3Back 18 c c +964.142 1.70 1.284 Test_3Back 18 c c +966.342 1.70 1.168 Test_3Back 18 c c +968.542 1.70 1.129 Test_3Back 18 n n +970.742 1.70 1.108 Test_3Back 18 c c +972.942 1.70 1.100 Test_3Back 18 c c +975.142 1.70 1.108 Test_3Back 18 n n +977.342 1.70 1.172 Test_3Back 18 c c +979.542 1.70 0.851 Test_3Back 18 c c +981.742 1.70 0.948 Test_3Back 18 n n +983.942 1.70 1.087 Test_3Back 18 c c +986.142 1.70 1.149 Test_3Back 18 n n +988.342 1.70 1.078 Test_3Back 18 c c diff --git a/example1/source/002/s01558/inp/VAS.tsv b/example1/source/002/s01558/inp/VAS.tsv index ff466be..3c7b05b 100644 --- a/example1/source/002/s01558/inp/VAS.tsv +++ b/example1/source/002/s01558/inp/VAS.tsv @@ -1,8 +1,8 @@ trial_type stim_file value -Motivation Vas/images/VAS.0.bmp 61.02 -Happiness Vas/images/VAS.1.bmp 52.58 -Fatigue Vas/images/VAS.2.bmp 43.21 -Openness Vas/images/VAS.3.bmp 56.66 -Stress Vas/images/VAS.4.bmp 54.03 -Anxiety Vas/images/VAS.5.bmp 58.09 -Effort Vas/images/VAS.6.bmp 46.51 +Motivation Vas/images/VAS.0.bmp 46.56 +Happiness Vas/images/VAS.1.bmp 68.80 +Fatigue Vas/images/VAS.2.bmp 48.03 +Openness Vas/images/VAS.3.bmp 32.02 +Stress Vas/images/VAS.4.bmp 59.46 +Anxiety Vas/images/VAS.5.bmp 60.13 +Effort Vas/images/VAS.6.bmp 48.91 diff --git a/example1/source/002/s01558/nii/f1558-0002-00001-000001-01.json b/example1/source/002/s01558/nii/f1558-0002-00001-000001-01.json index 92b7ddb..bc48f01 100644 --- a/example1/source/002/s01558/nii/f1558-0002-00001-000001-01.json +++ b/example1/source/002/s01558/nii/f1558-0002-00001-000001-01.json @@ -19,24 +19,24 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.201809181027041043500637", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110354622951600665", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\M\\MB\\ND\\MOSAIC ", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 37627.087, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 38148.892, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.201809181027041043500637", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 37627.083, - "AcquisitionTime": 37621.1075, - "ContentTime": 37627.087, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110354622951600665", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 38148.882, + "AcquisitionTime": 38142.355, + "ContentTime": 38148.892, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", @@ -46,9 +46,9 @@ "SeriesDescription": "cmrr_mbep2d_bold_mb2_invertpe ", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -62,11 +62,11 @@ "RepetitionTime": 1170, "EchoTime": 30, "NumberOfAverages": 1, - "ImagingFrequency": 123.254429, + "ImagingFrequency": 123.254356, "ImagedNucleus": "1H", "EchoNumbers": 1, "MagneticFieldStrength": 3, - "SpacingBetweenSlices": 3.7499999455043, + "SpacingBetweenSlices": 3.7499998910086, "NumberOfPhaseEncodingSteps": 72, "EchoTrainLength": 72, "PercentSampling": 100, @@ -83,7 +83,7 @@ "InPlanePhaseEncodingDirection": "COL ", "FlipAngle": 90, "VariableFlipAngleFlag": "N ", - "SAR": 0.06373875426554999, + "SAR": 0.06537551787267, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", @@ -92,25 +92,25 @@ "Private_0019_100a": 36, "Private_0019_100b": 12000, "Private_0019_1011": "No", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], - "Private_0019_1015": [-654.02409649,-660.65060234,-27.67319298], + "Private_0019_1015": [-643.1807227100001,-663.66265106,-41.52861404], "Private_0019_1016": 5.85, "Private_0019_1017": 1, "Private_0019_1018": 2700, "Private_0019_1028": 28.345, - "Private_0019_1029": [0,830,509.99999999,190,1022.50000001,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,447.49999999,127.5,957.5,637.5,317.5,0,830,509.99999999,190,1022.50000001,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,447.49999999,127.5,957.5,637.5,317.5], - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810265513117800354.0.0.0", + "Private_0019_1029": [0,832.5,512.5,192.5,1022.50000001,702.5,385.00000001,65,895,575,257.50000001,1087.50000001,767.5,447.50000001,130,960.00000001,640,320.00000001,0,832.5,512.5,192.5,1022.50000001,702.5,385.00000001,65,895,575,257.50000001,1087.50000001,767.5,447.50000001,130,960.00000001,640,320.00000001], + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110353689370400354.0.0.0", "StudyID": "1 ", "SeriesNumber": 2, "AcquisitionNumber": 1, "InstanceNumber": 1, - "ImagePositionPatient": [-654.02409648895,-660.6506023406999,-27.673192977905], + "ImagePositionPatient": [-643.18072271347,-663.66265106201,-41.528614044189], "ImageOrientationPatient": [1,0,0,0,1,0], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", - "SliceLocation": -27.673192977905, + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", + "SliceLocation": -41.528614044189, "ImageComments": "Unaliased MB2\/PE2 ", "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", @@ -122,19 +122,19 @@ "HighBit": 15, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 35790, - "WindowCenter": 10766, - "WindowWidth": 23303, + "LargestImagePixelValue": 29581, + "WindowCenter": 9809, + "WindowWidth": 20872, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 36, "EchoColumnPosition": 36, "EchoPartitionPosition": 32, - "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", + "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", "ICE_Dims": "X_1_1_1_1_1_1_19_1_1_1_1_18", "ProtocolSliceNumber": 0, "RealDwellTime": 2700, @@ -146,33 +146,33 @@ "NumberOfImagesInMosaic": 36, "SliceNormalVector": [0,0,1], "TimeAfterStart": 5.85, - "ImaAbsTablePosition": [0,0,-1259], + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, - "SlicePosition_PCS": [-654.02409649,-660.65060234,-27.67319298], + "SlicePosition_PCS": [-643.1807227100001,-663.66265106,-41.52861404], "MultistepIndex": 0, "ImaRelTablePosition": [0,0,0], - "ImaCoilString": "HC1-6", + "ImaCoilString": "HC1-7", "RFSWDDataType": "predicted", "GSWDDataType": "predicted", "BandwidthPerPixelPhaseEncode": 28.345, - "MosaicRefAcqTimes": [0,830,509.99999999,190,1022.50000001,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,447.49999999,127.5,957.5,637.5,317.5,0,830,509.99999999,190,1022.50000001,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,447.49999999,127.5,957.5,637.5,317.5], + "MosaicRefAcqTimes": [0,832.5,512.5,192.5,1022.50000001,702.5,385.00000001,65,895,575,257.50000001,1087.50000001,767.5,447.50000001,130,960.00000001,640,320.00000001,0,832.5,512.5,192.5,1022.50000001,702.5,385.00000001,65,895,575,257.50000001,1087.50000001,767.5,447.50000001,130,960.00000001,640,320.00000001], "ImageHistory": [ "ChannelMixing:ND=true_CMM=1_CDM=1", "CC:SoS" ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,2.68406215,2.68406215], + "Sed": [1000000,2.75576755,2.75576755], "SequenceFileOwner": "USER", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -188,7 +188,7 @@ "CoilForGradient": "void", "CoilForGradient2": "AS82", "CoilId": [255,0,4877,0,0,4875,4876,4865,4866,0,0], - "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,17848,0,0,0,0,0,0], + "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,21093,0,0,0,0,0,0], "MrProtocolVersion": 51130001, "PositivePCSDirections": "+LPH", "RelTablePosition": [0,0,0], @@ -196,8 +196,8 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 1, "SliceResolution": 1, - "AbsTablePosition": -1259, - "CoilString": "HC1-6", + "AbsTablePosition": -1268, + "CoilString": "HC1-7", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, "Isocentered": 0, @@ -206,12 +206,12 @@ "tSequenceFileName": "%CustomerSeq%\\cmrr_mbep2d_bold", "tProtocolName": "cmrr_mbep2d_bold_mb2_invertpe", "tdefaultEVAProt": "%SiemensEvaDefProt%\\BOLD\\t-test_10B10A_moco.evp", - "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", - "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", - "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", + "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", + "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", + "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 2, "ucEnableNoiseAdjust": 1, @@ -272,64 +272,64 @@ "bEddyCompensationValid": 1, "bB0CompensationValid": 1, "bCrossTermCompensationValid": 1, - "lOffsetX": 2892, - "lOffsetY": -4178, - "lOffsetZ": 1682, + "lOffsetX": 2919, + "lOffsetY": -4319, + "lOffsetZ": 1708, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, - "alShimCurrent": [537,-3,134,-260,31] + "alShimCurrent": [548,17,-139,-131,3] }, "sRXSPEC": { "lGain": 1, @@ -354,9 +354,9 @@ "dPhaseFOV": 216, "dReadoutFOV": 216, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -540,8 +540,8 @@ "lDecouplingType": 1, "lNOEType": 1, "lExcitationType": 1, - "lFinalMatrixSizePhase": 20180918, - "lFinalMatrixSizeRead": 102651, + "lFinalMatrixSizePhase": 20180911, + "lFinalMatrixSizeRead": 103532, "lFinalMatrixSizeSlice": 36, "lSpecAppl": 1, "lSpectralSuppression": 1 @@ -601,9 +601,9 @@ "Laterality": 0, "SliceInformation": { "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -629,7 +629,7 @@ ] }, "sWipMemBlock": { - "tFree": "b23f6124-c93c-453e-87b1-c63d6cdf982a||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", + "tFree": "0fb33eb9-1ab0-4419-97dd-f40f5104f6ea||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", "alFree": [264,0,6400,5120,0,0,0,1,0,3,11,0,0,2,1,0,1,1,1,1,10,40000,100000,1,0,2,1,1,0,100,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,1,1], "adFree": [1,12,3,12] }, @@ -709,12 +709,12 @@ "FlowCompensation": "No", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.31434258,0], - "TablePositionOrigin": [0,0,-1259], - "FmriExternalInfo": "b23f6124-c93c-453e-87b1-c63d6cdf982a||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", - "B1rms": [100,0.93257431], + "SARMostCriticalAspect": [3.2,0.32241466,0], + "TablePositionOrigin": [0,0,-1268], + "FmriExternalInfo": "0fb33eb9-1ab0-4419-97dd-f40f5104f6ea||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", + "B1rms": [100,0.9308827200000001], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "NONE", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -725,9 +725,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -736,14 +736,14 @@ "Private_0051_100b": "72*72 ", "Private_0051_100c": "FoV 1296*1296 ", "Private_0051_100e": "Tra ", - "Private_0051_100f": "HC1-6 ", + "Private_0051_100f": "HC1-7 ", "Private_0051_1012": "TP 0", "Private_0051_1013": "+LPH", "Private_0051_1016": "M\/MB\/ND\/MOSAIC", "Private_0051_1017": "SL 3.0", "Private_0051_1018": "EXT ", "Private_0051_1019": "A1\/FS ", - "StartOfPixelData": 157396, + "StartOfPixelData": 165554, "SizeOfPixelData": 373248, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/f1558-0002-00001-000001-01.nii b/example1/source/002/s01558/nii/f1558-0002-00001-000001-01.nii index b438368..b6b0503 100644 --- a/example1/source/002/s01558/nii/f1558-0002-00001-000001-01.nii +++ b/example1/source/002/s01558/nii/f1558-0002-00001-000001-01.nii @@ -1 +1 @@ -f1558-0002-00001-000001-01.nii \ No newline at end of file +f1512-0002-00001-000001-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/f1558-0002-00002-000002-01.json b/example1/source/002/s01558/nii/f1558-0002-00002-000002-01.json index 1dbacd6..a6e7b90 100644 --- a/example1/source/002/s01558/nii/f1558-0002-00002-000002-01.json +++ b/example1/source/002/s01558/nii/f1558-0002-00002-000002-01.json @@ -19,24 +19,24 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810270417061400687", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110354641315100715", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\M\\MB\\ND\\MOSAIC ", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 37627.09, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 38148.896, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810270417061400687", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 37627.083, - "AcquisitionTime": 37622.2775, - "ContentTime": 37627.09, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110354641315100715", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 38148.882, + "AcquisitionTime": 38143.525, + "ContentTime": 38148.896, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", @@ -46,9 +46,9 @@ "SeriesDescription": "cmrr_mbep2d_bold_mb2_invertpe ", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -62,11 +62,11 @@ "RepetitionTime": 1170, "EchoTime": 30, "NumberOfAverages": 1, - "ImagingFrequency": 123.254429, + "ImagingFrequency": 123.254356, "ImagedNucleus": "1H", "EchoNumbers": 1, "MagneticFieldStrength": 3, - "SpacingBetweenSlices": 3.7499999455043, + "SpacingBetweenSlices": 3.7499998910086, "NumberOfPhaseEncodingSteps": 72, "EchoTrainLength": 72, "PercentSampling": 100, @@ -83,7 +83,7 @@ "InPlanePhaseEncodingDirection": "COL ", "FlipAngle": 90, "VariableFlipAngleFlag": "N ", - "SAR": 0.06373875426554999, + "SAR": 0.06537551787267, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", @@ -92,25 +92,25 @@ "Private_0019_100a": 36, "Private_0019_100b": 12000, "Private_0019_1011": "No", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], - "Private_0019_1015": [-654.02409649,-660.65060234,-27.67319298], + "Private_0019_1015": [-643.1807227100001,-663.66265106,-41.52861404], "Private_0019_1016": 7.02, "Private_0019_1017": 1, "Private_0019_1018": 2700, "Private_0019_1028": 28.345, - "Private_0019_1029": [0,830,510.00000001,190,1022.50000001,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,447.50000001,127.5,957.5,637.5,317.5,0,830,510.00000001,190,1022.50000001,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,447.50000001,127.5,957.5,637.5,317.5], - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810265513117800354.0.0.0", + "Private_0019_1029": [0,832.5,512.50000001,192.5,1022.50000001,702.5,385.00000001,65,895,575.00000001,257.50000001,1087.50000001,767.5,447.50000001,130,960.00000001,640,320.00000001,0,832.5,512.50000001,192.5,1022.50000001,702.5,385.00000001,65,895,575.00000001,257.50000001,1087.50000001,767.5,447.50000001,130,960.00000001,640,320.00000001], + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110353689370400354.0.0.0", "StudyID": "1 ", "SeriesNumber": 2, "AcquisitionNumber": 2, "InstanceNumber": 2, - "ImagePositionPatient": [-654.02409648895,-660.6506023406999,-27.673192977905], + "ImagePositionPatient": [-643.18072271347,-663.66265106201,-41.528614044189], "ImageOrientationPatient": [1,0,0,0,1,0], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", - "SliceLocation": -27.673192977905, + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", + "SliceLocation": -41.528614044189, "ImageComments": "Unaliased MB2\/PE2 ", "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", @@ -122,19 +122,19 @@ "HighBit": 15, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 35093, - "WindowCenter": 10748, - "WindowWidth": 23259, + "LargestImagePixelValue": 29547, + "WindowCenter": 9801, + "WindowWidth": 20852, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 36, "EchoColumnPosition": 36, "EchoPartitionPosition": 32, - "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", + "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", "ICE_Dims": "X_1_1_1_2_1_1_19_1_1_1_1_18", "ProtocolSliceNumber": 0, "RealDwellTime": 2700, @@ -146,33 +146,33 @@ "NumberOfImagesInMosaic": 36, "SliceNormalVector": [0,0,1], "TimeAfterStart": 7.02, - "ImaAbsTablePosition": [0,0,-1259], + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, - "SlicePosition_PCS": [-654.02409649,-660.65060234,-27.67319298], + "SlicePosition_PCS": [-643.1807227100001,-663.66265106,-41.52861404], "MultistepIndex": 0, "ImaRelTablePosition": [0,0,0], - "ImaCoilString": "HC1-6", + "ImaCoilString": "HC1-7", "RFSWDDataType": "predicted", "GSWDDataType": "predicted", "BandwidthPerPixelPhaseEncode": 28.345, - "MosaicRefAcqTimes": [0,830,510.00000001,190,1022.50000001,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,447.50000001,127.5,957.5,637.5,317.5,0,830,510.00000001,190,1022.50000001,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,447.50000001,127.5,957.5,637.5,317.5], + "MosaicRefAcqTimes": [0,832.5,512.50000001,192.5,1022.50000001,702.5,385.00000001,65,895,575.00000001,257.50000001,1087.50000001,767.5,447.50000001,130,960.00000001,640,320.00000001,0,832.5,512.50000001,192.5,1022.50000001,702.5,385.00000001,65,895,575.00000001,257.50000001,1087.50000001,767.5,447.50000001,130,960.00000001,640,320.00000001], "ImageHistory": [ "ChannelMixing:ND=true_CMM=1_CDM=1", "CC:SoS" ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,2.68406215,2.68406215], + "Sed": [1000000,2.75576755,2.75576755], "SequenceFileOwner": "USER", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -188,7 +188,7 @@ "CoilForGradient": "void", "CoilForGradient2": "AS82", "CoilId": [255,0,4877,0,0,4875,4876,4865,4866,0,0], - "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,17848,0,0,0,0,0,0], + "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,21093,0,0,0,0,0,0], "MrProtocolVersion": 51130001, "PositivePCSDirections": "+LPH", "RelTablePosition": [0,0,0], @@ -196,8 +196,8 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 1, "SliceResolution": 1, - "AbsTablePosition": -1259, - "CoilString": "HC1-6", + "AbsTablePosition": -1268, + "CoilString": "HC1-7", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, "Isocentered": 0, @@ -206,12 +206,12 @@ "tSequenceFileName": "%CustomerSeq%\\cmrr_mbep2d_bold", "tProtocolName": "cmrr_mbep2d_bold_mb2_invertpe", "tdefaultEVAProt": "%SiemensEvaDefProt%\\BOLD\\t-test_10B10A_moco.evp", - "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", - "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", - "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", + "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", + "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", + "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 2, "ucEnableNoiseAdjust": 1, @@ -272,64 +272,64 @@ "bEddyCompensationValid": 1, "bB0CompensationValid": 1, "bCrossTermCompensationValid": 1, - "lOffsetX": 2892, - "lOffsetY": -4178, - "lOffsetZ": 1682, + "lOffsetX": 2919, + "lOffsetY": -4319, + "lOffsetZ": 1708, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, - "alShimCurrent": [537,-3,134,-260,31] + "alShimCurrent": [548,17,-139,-131,3] }, "sRXSPEC": { "lGain": 1, @@ -354,9 +354,9 @@ "dPhaseFOV": 216, "dReadoutFOV": 216, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -540,8 +540,8 @@ "lDecouplingType": 1, "lNOEType": 1, "lExcitationType": 1, - "lFinalMatrixSizePhase": 20180918, - "lFinalMatrixSizeRead": 102651, + "lFinalMatrixSizePhase": 20180911, + "lFinalMatrixSizeRead": 103532, "lFinalMatrixSizeSlice": 36, "lSpecAppl": 1, "lSpectralSuppression": 1 @@ -601,9 +601,9 @@ "Laterality": 0, "SliceInformation": { "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -629,7 +629,7 @@ ] }, "sWipMemBlock": { - "tFree": "b23f6124-c93c-453e-87b1-c63d6cdf982a||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", + "tFree": "0fb33eb9-1ab0-4419-97dd-f40f5104f6ea||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", "alFree": [264,0,6400,5120,0,0,0,1,0,3,11,0,0,2,1,0,1,1,1,1,10,40000,100000,1,0,2,1,1,0,100,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,1,1], "adFree": [1,12,3,12] }, @@ -709,12 +709,12 @@ "FlowCompensation": "No", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.31434258,0], - "TablePositionOrigin": [0,0,-1259], - "FmriExternalInfo": "b23f6124-c93c-453e-87b1-c63d6cdf982a||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", - "B1rms": [100,0.93257431], + "SARMostCriticalAspect": [3.2,0.32241466,0], + "TablePositionOrigin": [0,0,-1268], + "FmriExternalInfo": "0fb33eb9-1ab0-4419-97dd-f40f5104f6ea||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", + "B1rms": [100,0.9308827200000001], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "NONE", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -725,9 +725,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -736,14 +736,14 @@ "Private_0051_100b": "72*72 ", "Private_0051_100c": "FoV 1296*1296 ", "Private_0051_100e": "Tra ", - "Private_0051_100f": "HC1-6 ", + "Private_0051_100f": "HC1-7 ", "Private_0051_1012": "TP 0", "Private_0051_1013": "+LPH", "Private_0051_1016": "M\/MB\/ND\/MOSAIC", "Private_0051_1017": "SL 3.0", "Private_0051_1018": "EXT ", "Private_0051_1019": "A1\/FS ", - "StartOfPixelData": 157404, + "StartOfPixelData": 165554, "SizeOfPixelData": 373248, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/f1558-0002-00002-000002-01.nii b/example1/source/002/s01558/nii/f1558-0002-00002-000002-01.nii index 0224170..5a4c061 100644 --- a/example1/source/002/s01558/nii/f1558-0002-00002-000002-01.nii +++ b/example1/source/002/s01558/nii/f1558-0002-00002-000002-01.nii @@ -1 +1 @@ -f1558-0002-00002-000002-01.nii \ No newline at end of file +f1512-0002-00002-000002-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/f1558-0002-00003-000003-01.json b/example1/source/002/s01558/nii/f1558-0002-00003-000003-01.json index 831d53a..44d433f 100644 --- a/example1/source/002/s01558/nii/f1558-0002-00003-000003-01.json +++ b/example1/source/002/s01558/nii/f1558-0002-00003-000003-01.json @@ -19,24 +19,24 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810270474781300761", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110354662054400767", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\M\\MB\\ND\\MOSAIC ", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 37627.102, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 38148.903, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810270474781300761", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 37627.083, - "AcquisitionTime": 37623.4475, - "ContentTime": 37627.102, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110354662054400767", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 38148.882, + "AcquisitionTime": 38144.695, + "ContentTime": 38148.903, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", @@ -46,9 +46,9 @@ "SeriesDescription": "cmrr_mbep2d_bold_mb2_invertpe ", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -62,11 +62,11 @@ "RepetitionTime": 1170, "EchoTime": 30, "NumberOfAverages": 1, - "ImagingFrequency": 123.254429, + "ImagingFrequency": 123.254356, "ImagedNucleus": "1H", "EchoNumbers": 1, "MagneticFieldStrength": 3, - "SpacingBetweenSlices": 3.7499999455043, + "SpacingBetweenSlices": 3.7499998910086, "NumberOfPhaseEncodingSteps": 72, "EchoTrainLength": 72, "PercentSampling": 100, @@ -83,7 +83,7 @@ "InPlanePhaseEncodingDirection": "COL ", "FlipAngle": 90, "VariableFlipAngleFlag": "N ", - "SAR": 0.06373875426554999, + "SAR": 0.06537551787267, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", @@ -92,25 +92,25 @@ "Private_0019_100a": 36, "Private_0019_100b": 12000, "Private_0019_1011": "No", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], - "Private_0019_1015": [-654.02409649,-660.65060234,-27.67319298], + "Private_0019_1015": [-643.1807227100001,-663.66265106,-41.52861404], "Private_0019_1016": 8.19, "Private_0019_1017": 1, "Private_0019_1018": 2700, "Private_0019_1028": 28.345, - "Private_0019_1029": [0,830,510.00000001,190,1022.50000001,702.5,382.50000001,62.5,892.5,575.00000001,255,1085.00000001,765,447.50000001,127.5,957.5,637.50000001,317.5,0,830,510.00000001,190,1022.50000001,702.5,382.50000001,62.5,892.5,575.00000001,255,1085.00000001,765,447.50000001,127.5,957.5,637.50000001,317.5], - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810265513117800354.0.0.0", + "Private_0019_1029": [0,832.49999999,512.5,192.49999999,1022.49999999,702.5,384.99999999,64.99999999000001,894.99999999,575,257.49999999,1087.49999999,767.49999999,447.49999999,129.99999999,959.99999999,640,319.99999999,0,832.49999999,512.5,192.49999999,1022.49999999,702.5,384.99999999,64.99999999000001,894.99999999,575,257.49999999,1087.49999999,767.49999999,447.49999999,129.99999999,959.99999999,640,319.99999999], + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110353689370400354.0.0.0", "StudyID": "1 ", "SeriesNumber": 2, "AcquisitionNumber": 3, "InstanceNumber": 3, - "ImagePositionPatient": [-654.02409648895,-660.6506023406999,-27.673192977905], + "ImagePositionPatient": [-643.18072271347,-663.66265106201,-41.528614044189], "ImageOrientationPatient": [1,0,0,0,1,0], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", - "SliceLocation": -27.673192977905, + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", + "SliceLocation": -41.528614044189, "ImageComments": "Unaliased MB2\/PE2 ", "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", @@ -122,19 +122,19 @@ "HighBit": 15, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 34949, - "WindowCenter": 10743, - "WindowWidth": 23248, + "LargestImagePixelValue": 29752, + "WindowCenter": 9792, + "WindowWidth": 20831, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 36, "EchoColumnPosition": 36, "EchoPartitionPosition": 32, - "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", + "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", "ICE_Dims": "X_1_1_1_3_1_1_19_1_1_1_1_18", "ProtocolSliceNumber": 0, "RealDwellTime": 2700, @@ -146,33 +146,33 @@ "NumberOfImagesInMosaic": 36, "SliceNormalVector": [0,0,1], "TimeAfterStart": 8.19, - "ImaAbsTablePosition": [0,0,-1259], + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, - "SlicePosition_PCS": [-654.02409649,-660.65060234,-27.67319298], + "SlicePosition_PCS": [-643.1807227100001,-663.66265106,-41.52861404], "MultistepIndex": 0, "ImaRelTablePosition": [0,0,0], - "ImaCoilString": "HC1-6", + "ImaCoilString": "HC1-7", "RFSWDDataType": "predicted", "GSWDDataType": "predicted", "BandwidthPerPixelPhaseEncode": 28.345, - "MosaicRefAcqTimes": [0,830,510.00000001,190,1022.50000001,702.5,382.50000001,62.5,892.5,575.00000001,255,1085.00000001,765,447.50000001,127.5,957.5,637.50000001,317.5,0,830,510.00000001,190,1022.50000001,702.5,382.50000001,62.5,892.5,575.00000001,255,1085.00000001,765,447.50000001,127.5,957.5,637.50000001,317.5], + "MosaicRefAcqTimes": [0,832.49999999,512.5,192.49999999,1022.49999999,702.5,384.99999999,64.99999999000001,894.99999999,575,257.49999999,1087.49999999,767.49999999,447.49999999,129.99999999,959.99999999,640,319.99999999,0,832.49999999,512.5,192.49999999,1022.49999999,702.5,384.99999999,64.99999999000001,894.99999999,575,257.49999999,1087.49999999,767.49999999,447.49999999,129.99999999,959.99999999,640,319.99999999], "ImageHistory": [ "ChannelMixing:ND=true_CMM=1_CDM=1", "CC:SoS" ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,2.68406215,2.68406215], + "Sed": [1000000,2.75576755,2.75576755], "SequenceFileOwner": "USER", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -188,7 +188,7 @@ "CoilForGradient": "void", "CoilForGradient2": "AS82", "CoilId": [255,0,4877,0,0,4875,4876,4865,4866,0,0], - "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,17848,0,0,0,0,0,0], + "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,21093,0,0,0,0,0,0], "MrProtocolVersion": 51130001, "PositivePCSDirections": "+LPH", "RelTablePosition": [0,0,0], @@ -196,8 +196,8 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 1, "SliceResolution": 1, - "AbsTablePosition": -1259, - "CoilString": "HC1-6", + "AbsTablePosition": -1268, + "CoilString": "HC1-7", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, "Isocentered": 0, @@ -206,12 +206,12 @@ "tSequenceFileName": "%CustomerSeq%\\cmrr_mbep2d_bold", "tProtocolName": "cmrr_mbep2d_bold_mb2_invertpe", "tdefaultEVAProt": "%SiemensEvaDefProt%\\BOLD\\t-test_10B10A_moco.evp", - "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", - "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", - "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", + "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", + "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", + "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 2, "ucEnableNoiseAdjust": 1, @@ -272,64 +272,64 @@ "bEddyCompensationValid": 1, "bB0CompensationValid": 1, "bCrossTermCompensationValid": 1, - "lOffsetX": 2892, - "lOffsetY": -4178, - "lOffsetZ": 1682, + "lOffsetX": 2919, + "lOffsetY": -4319, + "lOffsetZ": 1708, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, - "alShimCurrent": [537,-3,134,-260,31] + "alShimCurrent": [548,17,-139,-131,3] }, "sRXSPEC": { "lGain": 1, @@ -354,9 +354,9 @@ "dPhaseFOV": 216, "dReadoutFOV": 216, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -540,8 +540,8 @@ "lDecouplingType": 1, "lNOEType": 1, "lExcitationType": 1, - "lFinalMatrixSizePhase": 20180918, - "lFinalMatrixSizeRead": 102651, + "lFinalMatrixSizePhase": 20180911, + "lFinalMatrixSizeRead": 103532, "lFinalMatrixSizeSlice": 36, "lSpecAppl": 1, "lSpectralSuppression": 1 @@ -601,9 +601,9 @@ "Laterality": 0, "SliceInformation": { "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -629,7 +629,7 @@ ] }, "sWipMemBlock": { - "tFree": "b23f6124-c93c-453e-87b1-c63d6cdf982a||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", + "tFree": "0fb33eb9-1ab0-4419-97dd-f40f5104f6ea||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", "alFree": [264,0,6400,5120,0,0,0,1,0,3,11,0,0,2,1,0,1,1,1,1,10,40000,100000,1,0,2,1,1,0,100,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,1,1], "adFree": [1,12,3,12] }, @@ -709,12 +709,12 @@ "FlowCompensation": "No", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.31434258,0], - "TablePositionOrigin": [0,0,-1259], - "FmriExternalInfo": "b23f6124-c93c-453e-87b1-c63d6cdf982a||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", - "B1rms": [100,0.93257431], + "SARMostCriticalAspect": [3.2,0.32241466,0], + "TablePositionOrigin": [0,0,-1268], + "FmriExternalInfo": "0fb33eb9-1ab0-4419-97dd-f40f5104f6ea||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", + "B1rms": [100,0.9308827200000001], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "NONE", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -725,9 +725,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -736,14 +736,14 @@ "Private_0051_100b": "72*72 ", "Private_0051_100c": "FoV 1296*1296 ", "Private_0051_100e": "Tra ", - "Private_0051_100f": "HC1-6 ", + "Private_0051_100f": "HC1-7 ", "Private_0051_1012": "TP 0", "Private_0051_1013": "+LPH", "Private_0051_1016": "M\/MB\/ND\/MOSAIC", "Private_0051_1017": "SL 3.0", "Private_0051_1018": "EXT ", "Private_0051_1019": "A1\/FS ", - "StartOfPixelData": 157404, + "StartOfPixelData": 165554, "SizeOfPixelData": 373248, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/f1558-0002-00003-000003-01.nii b/example1/source/002/s01558/nii/f1558-0002-00003-000003-01.nii index 427245d..652ae56 100644 --- a/example1/source/002/s01558/nii/f1558-0002-00003-000003-01.nii +++ b/example1/source/002/s01558/nii/f1558-0002-00003-000003-01.nii @@ -1 +1 @@ -f1558-0002-00003-000003-01.nii \ No newline at end of file +f1512-0002-00003-000003-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/f1558-0002-00004-000004-01.json b/example1/source/002/s01558/nii/f1558-0002-00004-000004-01.json index 673d63d..151f825 100644 --- a/example1/source/002/s01558/nii/f1558-0002-00004-000004-01.json +++ b/example1/source/002/s01558/nii/f1558-0002-00004-000004-01.json @@ -19,24 +19,24 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810270585274000867", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110354763904200867", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\M\\MB\\ND\\MOSAIC ", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 37627.11, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 38148.906, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810270585274000867", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 37627.083, - "AcquisitionTime": 37624.6175, - "ContentTime": 37627.11, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110354763904200867", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 38148.882, + "AcquisitionTime": 38145.865, + "ContentTime": 38148.906, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", @@ -46,9 +46,9 @@ "SeriesDescription": "cmrr_mbep2d_bold_mb2_invertpe ", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -62,11 +62,11 @@ "RepetitionTime": 1170, "EchoTime": 30, "NumberOfAverages": 1, - "ImagingFrequency": 123.254429, + "ImagingFrequency": 123.254356, "ImagedNucleus": "1H", "EchoNumbers": 1, "MagneticFieldStrength": 3, - "SpacingBetweenSlices": 3.7499999455043, + "SpacingBetweenSlices": 3.7499998910086, "NumberOfPhaseEncodingSteps": 72, "EchoTrainLength": 72, "PercentSampling": 100, @@ -83,7 +83,7 @@ "InPlanePhaseEncodingDirection": "COL ", "FlipAngle": 90, "VariableFlipAngleFlag": "N ", - "SAR": 0.06373875426554999, + "SAR": 0.06537551787267, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", @@ -92,25 +92,25 @@ "Private_0019_100a": 36, "Private_0019_100b": 12000, "Private_0019_1011": "No", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], - "Private_0019_1015": [-654.02409649,-660.65060234,-27.67319298], + "Private_0019_1015": [-643.1807227100001,-663.66265106,-41.52861404], "Private_0019_1016": 9.359999999999999, "Private_0019_1017": 1, "Private_0019_1018": 2700, "Private_0019_1028": 28.345, - "Private_0019_1029": [0,830,510.00000001,190,1022.50000001,702.50000001,382.50000001,62.5,892.5,575.00000001,255,1085.00000001,765.00000001,447.50000001,127.5,957.5,637.50000001,317.5,0,830,510.00000001,190,1022.50000001,702.50000001,382.50000001,62.5,892.5,575.00000001,255,1085.00000001,765.00000001,447.50000001,127.5,957.5,637.50000001,317.5], - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810265513117800354.0.0.0", + "Private_0019_1029": [0,832.49999999,512.5,192.49999999,1022.49999999,702.5,384.99999999,64.99999999000001,894.99999999,575,257.49999999,1087.49999999,767.5,447.49999999,129.99999999,959.99999999,640,319.99999999,0,832.49999999,512.5,192.49999999,1022.49999999,702.5,384.99999999,64.99999999000001,894.99999999,575,257.49999999,1087.49999999,767.5,447.49999999,129.99999999,959.99999999,640,319.99999999], + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110353689370400354.0.0.0", "StudyID": "1 ", "SeriesNumber": 2, "AcquisitionNumber": 4, "InstanceNumber": 4, - "ImagePositionPatient": [-654.02409648895,-660.6506023406999,-27.673192977905], + "ImagePositionPatient": [-643.18072271347,-663.66265106201,-41.528614044189], "ImageOrientationPatient": [1,0,0,0,1,0], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", - "SliceLocation": -27.673192977905, + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", + "SliceLocation": -41.528614044189, "ImageComments": "Unaliased MB2\/PE2 ", "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", @@ -122,19 +122,19 @@ "HighBit": 15, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 34675, - "WindowCenter": 10744, - "WindowWidth": 23248, + "LargestImagePixelValue": 29632, + "WindowCenter": 9796, + "WindowWidth": 20836, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 36, "EchoColumnPosition": 36, "EchoPartitionPosition": 32, - "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", + "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", "ICE_Dims": "X_1_1_1_4_1_1_19_1_1_1_1_18", "ProtocolSliceNumber": 0, "RealDwellTime": 2700, @@ -146,33 +146,33 @@ "NumberOfImagesInMosaic": 36, "SliceNormalVector": [0,0,1], "TimeAfterStart": 9.359999999999999, - "ImaAbsTablePosition": [0,0,-1259], + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, - "SlicePosition_PCS": [-654.02409649,-660.65060234,-27.67319298], + "SlicePosition_PCS": [-643.1807227100001,-663.66265106,-41.52861404], "MultistepIndex": 0, "ImaRelTablePosition": [0,0,0], - "ImaCoilString": "HC1-6", + "ImaCoilString": "HC1-7", "RFSWDDataType": "predicted", "GSWDDataType": "predicted", "BandwidthPerPixelPhaseEncode": 28.345, - "MosaicRefAcqTimes": [0,830,510.00000001,190,1022.50000001,702.50000001,382.50000001,62.5,892.5,575.00000001,255,1085.00000001,765.00000001,447.50000001,127.5,957.5,637.50000001,317.5,0,830,510.00000001,190,1022.50000001,702.50000001,382.50000001,62.5,892.5,575.00000001,255,1085.00000001,765.00000001,447.50000001,127.5,957.5,637.50000001,317.5], + "MosaicRefAcqTimes": [0,832.49999999,512.5,192.49999999,1022.49999999,702.5,384.99999999,64.99999999000001,894.99999999,575,257.49999999,1087.49999999,767.5,447.49999999,129.99999999,959.99999999,640,319.99999999,0,832.49999999,512.5,192.49999999,1022.49999999,702.5,384.99999999,64.99999999000001,894.99999999,575,257.49999999,1087.49999999,767.5,447.49999999,129.99999999,959.99999999,640,319.99999999], "ImageHistory": [ "ChannelMixing:ND=true_CMM=1_CDM=1", "CC:SoS" ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,2.68406215,2.68406215], + "Sed": [1000000,2.75576755,2.75576755], "SequenceFileOwner": "USER", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -188,7 +188,7 @@ "CoilForGradient": "void", "CoilForGradient2": "AS82", "CoilId": [255,0,4877,0,0,4875,4876,4865,4866,0,0], - "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,17848,0,0,0,0,0,0], + "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,21093,0,0,0,0,0,0], "MrProtocolVersion": 51130001, "PositivePCSDirections": "+LPH", "RelTablePosition": [0,0,0], @@ -196,8 +196,8 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 1, "SliceResolution": 1, - "AbsTablePosition": -1259, - "CoilString": "HC1-6", + "AbsTablePosition": -1268, + "CoilString": "HC1-7", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, "Isocentered": 0, @@ -206,12 +206,12 @@ "tSequenceFileName": "%CustomerSeq%\\cmrr_mbep2d_bold", "tProtocolName": "cmrr_mbep2d_bold_mb2_invertpe", "tdefaultEVAProt": "%SiemensEvaDefProt%\\BOLD\\t-test_10B10A_moco.evp", - "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", - "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", - "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", + "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", + "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", + "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 2, "ucEnableNoiseAdjust": 1, @@ -272,64 +272,64 @@ "bEddyCompensationValid": 1, "bB0CompensationValid": 1, "bCrossTermCompensationValid": 1, - "lOffsetX": 2892, - "lOffsetY": -4178, - "lOffsetZ": 1682, + "lOffsetX": 2919, + "lOffsetY": -4319, + "lOffsetZ": 1708, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, - "alShimCurrent": [537,-3,134,-260,31] + "alShimCurrent": [548,17,-139,-131,3] }, "sRXSPEC": { "lGain": 1, @@ -354,9 +354,9 @@ "dPhaseFOV": 216, "dReadoutFOV": 216, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -540,8 +540,8 @@ "lDecouplingType": 1, "lNOEType": 1, "lExcitationType": 1, - "lFinalMatrixSizePhase": 20180918, - "lFinalMatrixSizeRead": 102651, + "lFinalMatrixSizePhase": 20180911, + "lFinalMatrixSizeRead": 103532, "lFinalMatrixSizeSlice": 36, "lSpecAppl": 1, "lSpectralSuppression": 1 @@ -601,9 +601,9 @@ "Laterality": 0, "SliceInformation": { "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -629,7 +629,7 @@ ] }, "sWipMemBlock": { - "tFree": "b23f6124-c93c-453e-87b1-c63d6cdf982a||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", + "tFree": "0fb33eb9-1ab0-4419-97dd-f40f5104f6ea||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", "alFree": [264,0,6400,5120,0,0,0,1,0,3,11,0,0,2,1,0,1,1,1,1,10,40000,100000,1,0,2,1,1,0,100,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,1,1], "adFree": [1,12,3,12] }, @@ -709,12 +709,12 @@ "FlowCompensation": "No", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.31434258,0], - "TablePositionOrigin": [0,0,-1259], - "FmriExternalInfo": "b23f6124-c93c-453e-87b1-c63d6cdf982a||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", - "B1rms": [100,0.93257431], + "SARMostCriticalAspect": [3.2,0.32241466,0], + "TablePositionOrigin": [0,0,-1268], + "FmriExternalInfo": "0fb33eb9-1ab0-4419-97dd-f40f5104f6ea||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", + "B1rms": [100,0.9308827200000001], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "NONE", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -725,9 +725,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -736,14 +736,14 @@ "Private_0051_100b": "72*72 ", "Private_0051_100c": "FoV 1296*1296 ", "Private_0051_100e": "Tra ", - "Private_0051_100f": "HC1-6 ", + "Private_0051_100f": "HC1-7 ", "Private_0051_1012": "TP 0", "Private_0051_1013": "+LPH", "Private_0051_1016": "M\/MB\/ND\/MOSAIC", "Private_0051_1017": "SL 3.0", "Private_0051_1018": "EXT ", "Private_0051_1019": "A1\/FS ", - "StartOfPixelData": 157404, + "StartOfPixelData": 165554, "SizeOfPixelData": 373248, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/f1558-0002-00004-000004-01.nii b/example1/source/002/s01558/nii/f1558-0002-00004-000004-01.nii index ac47cba..a8523ad 100644 --- a/example1/source/002/s01558/nii/f1558-0002-00004-000004-01.nii +++ b/example1/source/002/s01558/nii/f1558-0002-00004-000004-01.nii @@ -1 +1 @@ -f1558-0002-00004-000004-01.nii \ No newline at end of file +f1512-0002-00004-000004-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/f1558-0002-00005-000005-01.json b/example1/source/002/s01558/nii/f1558-0002-00005-000005-01.json index e60087f..4af57c9 100644 --- a/example1/source/002/s01558/nii/f1558-0002-00005-000005-01.json +++ b/example1/source/002/s01558/nii/f1558-0002-00005-000005-01.json @@ -19,24 +19,24 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.201809181027071823100977", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110354880885700977", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\M\\MB\\ND\\MOSAIC ", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 37627.113, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 38148.908, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.201809181027071823100977", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 37627.083, - "AcquisitionTime": 37625.7875, - "ContentTime": 37627.113, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110354880885700977", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 38148.882, + "AcquisitionTime": 38147.035, + "ContentTime": 38148.908, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", @@ -46,9 +46,9 @@ "SeriesDescription": "cmrr_mbep2d_bold_mb2_invertpe ", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -62,11 +62,11 @@ "RepetitionTime": 1170, "EchoTime": 30, "NumberOfAverages": 1, - "ImagingFrequency": 123.254429, + "ImagingFrequency": 123.254356, "ImagedNucleus": "1H", "EchoNumbers": 1, "MagneticFieldStrength": 3, - "SpacingBetweenSlices": 3.7499999455043, + "SpacingBetweenSlices": 3.7499998910086, "NumberOfPhaseEncodingSteps": 72, "EchoTrainLength": 72, "PercentSampling": 100, @@ -83,7 +83,7 @@ "InPlanePhaseEncodingDirection": "COL ", "FlipAngle": 90, "VariableFlipAngleFlag": "N ", - "SAR": 0.06373875426554999, + "SAR": 0.06537551787267, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", @@ -92,25 +92,25 @@ "Private_0019_100a": 36, "Private_0019_100b": 12000, "Private_0019_1011": "No", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], - "Private_0019_1015": [-654.02409649,-660.65060234,-27.67319298], + "Private_0019_1015": [-643.1807227100001,-663.66265106,-41.52861404], "Private_0019_1016": 10.53, "Private_0019_1017": 1, "Private_0019_1018": 2700, "Private_0019_1028": 28.345, - "Private_0019_1029": [0,829.99999999,509.99999999,189.99999999,1022.49999999,702.5,382.49999999,62.5,892.49999999,575,254.99999999,1084.99999999,765,447.49999999,127.49999999,957.49999999,637.5,317.49999999,0,829.99999999,509.99999999,189.99999999,1022.49999999,702.5,382.49999999,62.5,892.49999999,575,254.99999999,1084.99999999,765,447.49999999,127.49999999,957.49999999,637.5,317.49999999], - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810265513117800354.0.0.0", + "Private_0019_1029": [0,832.49999999,512.5,192.49999999,1022.49999999,702.5,384.99999999,65,894.99999999,575,257.49999999,1087.49999999,767.5,447.49999999,129.99999999,959.99999999,640,319.99999999,0,832.49999999,512.5,192.49999999,1022.49999999,702.5,384.99999999,65,894.99999999,575,257.49999999,1087.49999999,767.5,447.49999999,129.99999999,959.99999999,640,319.99999999], + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110353689370400354.0.0.0", "StudyID": "1 ", "SeriesNumber": 2, "AcquisitionNumber": 5, "InstanceNumber": 5, - "ImagePositionPatient": [-654.02409648895,-660.6506023406999,-27.673192977905], + "ImagePositionPatient": [-643.18072271347,-663.66265106201,-41.528614044189], "ImageOrientationPatient": [1,0,0,0,1,0], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", - "SliceLocation": -27.673192977905, + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", + "SliceLocation": -41.528614044189, "ImageComments": "Unaliased MB2\/PE2 ", "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", @@ -122,19 +122,19 @@ "HighBit": 15, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 34617, - "WindowCenter": 10747, - "WindowWidth": 23255, + "LargestImagePixelValue": 29743, + "WindowCenter": 9797, + "WindowWidth": 20839, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 36, "EchoColumnPosition": 36, "EchoPartitionPosition": 32, - "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", + "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", "ICE_Dims": "X_1_1_1_5_1_1_19_1_1_1_1_18", "ProtocolSliceNumber": 0, "RealDwellTime": 2700, @@ -146,33 +146,33 @@ "NumberOfImagesInMosaic": 36, "SliceNormalVector": [0,0,1], "TimeAfterStart": 10.53, - "ImaAbsTablePosition": [0,0,-1259], + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, - "SlicePosition_PCS": [-654.02409649,-660.65060234,-27.67319298], + "SlicePosition_PCS": [-643.1807227100001,-663.66265106,-41.52861404], "MultistepIndex": 0, "ImaRelTablePosition": [0,0,0], - "ImaCoilString": "HC1-6", + "ImaCoilString": "HC1-7", "RFSWDDataType": "predicted", "GSWDDataType": "predicted", "BandwidthPerPixelPhaseEncode": 28.345, - "MosaicRefAcqTimes": [0,829.99999999,509.99999999,189.99999999,1022.49999999,702.5,382.49999999,62.5,892.49999999,575,254.99999999,1084.99999999,765,447.49999999,127.49999999,957.49999999,637.5,317.49999999,0,829.99999999,509.99999999,189.99999999,1022.49999999,702.5,382.49999999,62.5,892.49999999,575,254.99999999,1084.99999999,765,447.49999999,127.49999999,957.49999999,637.5,317.49999999], + "MosaicRefAcqTimes": [0,832.49999999,512.5,192.49999999,1022.49999999,702.5,384.99999999,65,894.99999999,575,257.49999999,1087.49999999,767.5,447.49999999,129.99999999,959.99999999,640,319.99999999,0,832.49999999,512.5,192.49999999,1022.49999999,702.5,384.99999999,65,894.99999999,575,257.49999999,1087.49999999,767.5,447.49999999,129.99999999,959.99999999,640,319.99999999], "ImageHistory": [ "ChannelMixing:ND=true_CMM=1_CDM=1", "CC:SoS" ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,2.68406215,2.68406215], + "Sed": [1000000,2.75576755,2.75576755], "SequenceFileOwner": "USER", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -188,7 +188,7 @@ "CoilForGradient": "void", "CoilForGradient2": "AS82", "CoilId": [255,0,4877,0,0,4875,4876,4865,4866,0,0], - "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,17848,0,0,0,0,0,0], + "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,21093,0,0,0,0,0,0], "MrProtocolVersion": 51130001, "PositivePCSDirections": "+LPH", "RelTablePosition": [0,0,0], @@ -196,8 +196,8 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 1, "SliceResolution": 1, - "AbsTablePosition": -1259, - "CoilString": "HC1-6", + "AbsTablePosition": -1268, + "CoilString": "HC1-7", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, "Isocentered": 0, @@ -206,12 +206,12 @@ "tSequenceFileName": "%CustomerSeq%\\cmrr_mbep2d_bold", "tProtocolName": "cmrr_mbep2d_bold_mb2_invertpe", "tdefaultEVAProt": "%SiemensEvaDefProt%\\BOLD\\t-test_10B10A_moco.evp", - "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", - "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", - "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", + "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", + "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", + "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 2, "ucEnableNoiseAdjust": 1, @@ -272,64 +272,64 @@ "bEddyCompensationValid": 1, "bB0CompensationValid": 1, "bCrossTermCompensationValid": 1, - "lOffsetX": 2892, - "lOffsetY": -4178, - "lOffsetZ": 1682, + "lOffsetX": 2919, + "lOffsetY": -4319, + "lOffsetZ": 1708, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, - "alShimCurrent": [537,-3,134,-260,31] + "alShimCurrent": [548,17,-139,-131,3] }, "sRXSPEC": { "lGain": 1, @@ -354,9 +354,9 @@ "dPhaseFOV": 216, "dReadoutFOV": 216, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -540,8 +540,8 @@ "lDecouplingType": 1, "lNOEType": 1, "lExcitationType": 1, - "lFinalMatrixSizePhase": 20180918, - "lFinalMatrixSizeRead": 102651, + "lFinalMatrixSizePhase": 20180911, + "lFinalMatrixSizeRead": 103532, "lFinalMatrixSizeSlice": 36, "lSpecAppl": 1, "lSpectralSuppression": 1 @@ -601,9 +601,9 @@ "Laterality": 0, "SliceInformation": { "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -629,7 +629,7 @@ ] }, "sWipMemBlock": { - "tFree": "b23f6124-c93c-453e-87b1-c63d6cdf982a||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", + "tFree": "0fb33eb9-1ab0-4419-97dd-f40f5104f6ea||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", "alFree": [264,0,6400,5120,0,0,0,1,0,3,11,0,0,2,1,0,1,1,1,1,10,40000,100000,1,0,2,1,1,0,100,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,1,1], "adFree": [1,12,3,12] }, @@ -709,12 +709,12 @@ "FlowCompensation": "No", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.31434258,0], - "TablePositionOrigin": [0,0,-1259], - "FmriExternalInfo": "b23f6124-c93c-453e-87b1-c63d6cdf982a||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", - "B1rms": [100,0.93257431], + "SARMostCriticalAspect": [3.2,0.32241466,0], + "TablePositionOrigin": [0,0,-1268], + "FmriExternalInfo": "0fb33eb9-1ab0-4419-97dd-f40f5104f6ea||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", + "B1rms": [100,0.9308827200000001], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "NONE", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -725,9 +725,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -736,14 +736,14 @@ "Private_0051_100b": "72*72 ", "Private_0051_100c": "FoV 1296*1296 ", "Private_0051_100e": "Tra ", - "Private_0051_100f": "HC1-6 ", + "Private_0051_100f": "HC1-7 ", "Private_0051_1012": "TP 0", "Private_0051_1013": "+LPH", "Private_0051_1016": "M\/MB\/ND\/MOSAIC", "Private_0051_1017": "SL 3.0", "Private_0051_1018": "EXT ", "Private_0051_1019": "A1\/FS ", - "StartOfPixelData": 157408, + "StartOfPixelData": 165558, "SizeOfPixelData": 373248, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/f1558-0002-00005-000005-01.nii b/example1/source/002/s01558/nii/f1558-0002-00005-000005-01.nii index 3453b10..32d0328 100644 --- a/example1/source/002/s01558/nii/f1558-0002-00005-000005-01.nii +++ b/example1/source/002/s01558/nii/f1558-0002-00005-000005-01.nii @@ -1 +1 @@ -f1558-0002-00005-000005-01.nii \ No newline at end of file +f1512-0002-00005-000005-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/f1558-0004-00001-000001-01.json b/example1/source/002/s01558/nii/f1558-0004-00001-000001-01.json index 9d0cf64..4ab86f1 100644 --- a/example1/source/002/s01558/nii/f1558-0004-00001-000001-01.json +++ b/example1/source/002/s01558/nii/f1558-0004-00001-000001-01.json @@ -19,36 +19,36 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810364683480501178", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110435173894201206", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\M\\MB\\ND\\MOSAIC ", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 38228.889, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 38667.816, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810364683480501178", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 38228.886, - "AcquisitionTime": 38205.42, - "ContentTime": 38228.889, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110435173894201206", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 38667.813, + "AcquisitionTime": 38629.4375, + "ContentTime": 38667.816, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", "InstitutionAddress": "Allee du 6 Aout 8,Liege,Brussels,BE,4000", "StationName": "AWP66021", "StudyDescription": "protocols^studies ", - "SeriesDescription": "cmrr_mbep2d_bold_mb2_task_fat ", + "SeriesDescription": "cmrr_mbep2d_bold_mb2_task_nfat", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -62,11 +62,11 @@ "RepetitionTime": 1170, "EchoTime": 30, "NumberOfAverages": 1, - "ImagingFrequency": 123.254424, + "ImagingFrequency": 123.254353, "ImagedNucleus": "1H", "EchoNumbers": 1, "MagneticFieldStrength": 3, - "SpacingBetweenSlices": 3.7499999455043, + "SpacingBetweenSlices": 3.7499998910086, "NumberOfPhaseEncodingSteps": 72, "EchoTrainLength": 72, "PercentSampling": 100, @@ -74,8 +74,8 @@ "PixelBandwidth": 2570, "DeviceSerialNumber": "66021 ", "SoftwareVersions": "syngo MR E11", - "ProtocolName": "cmrr_mbep2d_bold_mb2_task_fat ", - "TriggerTime": 5952.5, + "ProtocolName": "cmrr_mbep2d_bold_mb2_task_nfat", + "TriggerTime": 5955, "NominalInterval": 0, "CardiacNumberOfImages": 1, "TransmitCoilName": "Body", @@ -83,7 +83,7 @@ "InPlanePhaseEncodingDirection": "COL ", "FlipAngle": 90, "VariableFlipAngleFlag": "N ", - "SAR": 0.06899448999726, + "SAR": 0.07076621454172, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", @@ -92,25 +92,25 @@ "Private_0019_100a": 36, "Private_0019_100b": 1176000, "Private_0019_1011": "No", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], - "Private_0019_1015": [-654.02409649,-660.65060234,-27.67319298], + "Private_0019_1015": [-643.1807227100001,-663.66265106,-41.52861404], "Private_0019_1016": 5.85, "Private_0019_1017": 1, "Private_0019_1018": 2700, "Private_0019_1028": 28.345, - "Private_0019_1029": [0,832.5,512.5,192.5,1022.50000001,702.5,384.99999999,65,895,575,257.50000001,1087.50000001,767.5,447.49999999,130,960.00000001,640,320.00000001,0,832.5,512.5,192.5,1022.50000001,702.5,384.99999999,65,895,575,257.50000001,1087.50000001,767.5,447.49999999,130,960.00000001,640,320.00000001], - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810363937512400983.0.0.0", + "Private_0019_1029": [0,830,509.99999999,190,1022.50000001,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,447.49999999,127.5,957.5,637.5,320.00000001,0,830,509.99999999,190,1022.50000001,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,447.49999999,127.5,957.5,637.5,320.00000001], + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110434387384500983.0.0.0", "StudyID": "1 ", "SeriesNumber": 4, "AcquisitionNumber": 1, "InstanceNumber": 1, - "ImagePositionPatient": [-654.02409648895,-660.6506023406999,-27.673192977905], + "ImagePositionPatient": [-643.18072271347,-663.66265106201,-41.528614044189], "ImageOrientationPatient": [1,0,0,0,1,0], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", - "SliceLocation": -27.673192977905, + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", + "SliceLocation": -41.528614044189, "ImageComments": "Unaliased MB2\/PE2 ", "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", @@ -122,19 +122,19 @@ "HighBit": 15, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 35915, - "WindowCenter": 10806, - "WindowWidth": 23472, + "LargestImagePixelValue": 29860, + "WindowCenter": 9811, + "WindowWidth": 20892, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 36, "EchoColumnPosition": 36, "EchoPartitionPosition": 32, - "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", + "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", "ICE_Dims": "X_1_1_1_1_1_1_19_1_1_1_1_20", "ProtocolSliceNumber": 0, "RealDwellTime": 2700, @@ -146,33 +146,33 @@ "NumberOfImagesInMosaic": 36, "SliceNormalVector": [0,0,1], "TimeAfterStart": 5.85, - "ImaAbsTablePosition": [0,0,-1259], + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, - "SlicePosition_PCS": [-654.02409649,-660.65060234,-27.67319298], + "SlicePosition_PCS": [-643.1807227100001,-663.66265106,-41.52861404], "MultistepIndex": 0, "ImaRelTablePosition": [0,0,0], - "ImaCoilString": "HC1-6", + "ImaCoilString": "HC1-7", "RFSWDDataType": "predicted", "GSWDDataType": "predicted", "BandwidthPerPixelPhaseEncode": 28.345, - "MosaicRefAcqTimes": [0,832.5,512.5,192.5,1022.50000001,702.5,384.99999999,65,895,575,257.50000001,1087.50000001,767.5,447.49999999,130,960.00000001,640,320.00000001,0,832.5,512.5,192.5,1022.50000001,702.5,384.99999999,65,895,575,257.50000001,1087.50000001,767.5,447.49999999,130,960.00000001,640,320.00000001], + "MosaicRefAcqTimes": [0,830,509.99999999,190,1022.50000001,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,447.49999999,127.5,957.5,637.5,320.00000001,0,830,509.99999999,190,1022.50000001,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,447.49999999,127.5,957.5,637.5,320.00000001], "ImageHistory": [ "ChannelMixing:ND=true_CMM=1_CDM=1", "CC:SoS" ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,83.82082859,83.82082859], + "Sed": [1000000,85.97584465,85.97584465], "SequenceFileOwner": "USER", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -188,7 +188,7 @@ "CoilForGradient": "void", "CoilForGradient2": "AS82", "CoilId": [255,0,4877,0,0,4875,4876,4865,4866,0,0], - "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,17848,0,0,0,0,0,0], + "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,21093,0,0,0,0,0,0], "MrProtocolVersion": 51130001, "PositivePCSDirections": "+LPH", "RelTablePosition": [0,0,0], @@ -196,22 +196,22 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 1, "SliceResolution": 1, - "AbsTablePosition": -1259, - "CoilString": "HC1-6", + "AbsTablePosition": -1268, + "CoilString": "HC1-7", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, "Isocentered": 0, "MrPhoenixProtocol": { "ulVersion": 51130001, "tSequenceFileName": "%CustomerSeq%\\cmrr_mbep2d_bold", - "tProtocolName": "cmrr_mbep2d_bold_mb2_task_fat", + "tProtocolName": "cmrr_mbep2d_bold_mb2_task_nfat", "tdefaultEVAProt": "%SiemensEvaDefProt%\\BOLD\\t-test_10B10A_moco.evp", - "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", - "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", - "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", + "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", + "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", + "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 1, "ucEnableNoiseAdjust": 1, @@ -239,7 +239,7 @@ "ucCoilCombineMode": 1, "ucFlipAngleMode": 1, "lTOM": 1, - "lProtID": -17, + "lProtID": -19, "lSequenceID": 20, "ucReadOutMode": 1, "ucBold3dPace": 1, @@ -272,64 +272,64 @@ "bEddyCompensationValid": 1, "bB0CompensationValid": 1, "bCrossTermCompensationValid": 1, - "lOffsetX": 2892, - "lOffsetY": -4178, - "lOffsetZ": 1682, + "lOffsetX": 2919, + "lOffsetY": -4319, + "lOffsetZ": 1708, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, - "alShimCurrent": [537,-3,134,-260,31] + "alShimCurrent": [548,17,-139,-131,3] }, "sRXSPEC": { "lGain": 1, @@ -354,9 +354,9 @@ "dPhaseFOV": 216, "dReadoutFOV": 216, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -540,8 +540,8 @@ "lDecouplingType": 1, "lNOEType": 1, "lExcitationType": 1, - "lFinalMatrixSizePhase": 20180918, - "lFinalMatrixSizeRead": 103638, + "lFinalMatrixSizePhase": 20180911, + "lFinalMatrixSizeRead": 104343, "lFinalMatrixSizeSlice": 36, "lSpecAppl": 1, "lSpectralSuppression": 1 @@ -601,9 +601,9 @@ "Laterality": 0, "SliceInformation": { "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -629,7 +629,7 @@ ] }, "sWipMemBlock": { - "tFree": "be4d0899-1131-4ad1-ba7f-82a509804652||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", + "tFree": "15b158ff-e003-4779-9866-0eb3605172db||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", "alFree": [8,0,6400,5120,0,0,0,1,0,3,11,0,0,2,1,0,1,1,1,1,10,40000,100000,1,0,2,1,1,0,100,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,1,1], "adFree": [1,12,3,12] }, @@ -709,12 +709,12 @@ "FlowCompensation": "No", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.34026247,0], - "TablePositionOrigin": [0,0,-1259], - "FmriExternalInfo": "be4d0899-1131-4ad1-ba7f-82a509804652||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", - "B1rms": [100,0.97026165], + "SARMostCriticalAspect": [3.2,0.34900014,0], + "TablePositionOrigin": [0,0,-1268], + "FmriExternalInfo": "15b158ff-e003-4779-9866-0eb3605172db||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", + "B1rms": [100,0.96850168], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "NONE", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -725,9 +725,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -736,14 +736,14 @@ "Private_0051_100b": "72*72 ", "Private_0051_100c": "FoV 1296*1296 ", "Private_0051_100e": "Tra ", - "Private_0051_100f": "HC1-6 ", + "Private_0051_100f": "HC1-7 ", "Private_0051_1012": "TP 0", "Private_0051_1013": "+LPH", "Private_0051_1016": "M\/MB\/ND\/MOSAIC", "Private_0051_1017": "SL 3.0", "Private_0051_1018": "EXT ", "Private_0051_1019": "A1\/FS ", - "StartOfPixelData": 165378, + "StartOfPixelData": 173538, "SizeOfPixelData": 373248, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/f1558-0004-00001-000001-01.nii b/example1/source/002/s01558/nii/f1558-0004-00001-000001-01.nii index 78deea9..1f807fd 100644 --- a/example1/source/002/s01558/nii/f1558-0004-00001-000001-01.nii +++ b/example1/source/002/s01558/nii/f1558-0004-00001-000001-01.nii @@ -1 +1 @@ -f1558-0004-00001-000001-01.nii \ No newline at end of file +f1512-0004-00001-000001-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/f1558-0004-00002-000002-01.json b/example1/source/002/s01558/nii/f1558-0004-00002-000002-01.json index a9c62bf..86a096a 100644 --- a/example1/source/002/s01558/nii/f1558-0004-00002-000002-01.json +++ b/example1/source/002/s01558/nii/f1558-0004-00002-000002-01.json @@ -19,36 +19,36 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810364775405701276", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110435225613001276", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\M\\MB\\ND\\MOSAIC ", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 38228.893, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 38667.819, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810364775405701276", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 38228.886, - "AcquisitionTime": 38206.59, - "ContentTime": 38228.893, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110435225613001276", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 38667.813, + "AcquisitionTime": 38630.6075, + "ContentTime": 38667.819, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", "InstitutionAddress": "Allee du 6 Aout 8,Liege,Brussels,BE,4000", "StationName": "AWP66021", "StudyDescription": "protocols^studies ", - "SeriesDescription": "cmrr_mbep2d_bold_mb2_task_fat ", + "SeriesDescription": "cmrr_mbep2d_bold_mb2_task_nfat", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -62,11 +62,11 @@ "RepetitionTime": 1170, "EchoTime": 30, "NumberOfAverages": 1, - "ImagingFrequency": 123.254424, + "ImagingFrequency": 123.254353, "ImagedNucleus": "1H", "EchoNumbers": 1, "MagneticFieldStrength": 3, - "SpacingBetweenSlices": 3.7499999455043, + "SpacingBetweenSlices": 3.7499998910086, "NumberOfPhaseEncodingSteps": 72, "EchoTrainLength": 72, "PercentSampling": 100, @@ -74,8 +74,8 @@ "PixelBandwidth": 2570, "DeviceSerialNumber": "66021 ", "SoftwareVersions": "syngo MR E11", - "ProtocolName": "cmrr_mbep2d_bold_mb2_task_fat ", - "TriggerTime": 7122.5, + "ProtocolName": "cmrr_mbep2d_bold_mb2_task_nfat", + "TriggerTime": 7125, "NominalInterval": 0, "CardiacNumberOfImages": 1, "TransmitCoilName": "Body", @@ -83,7 +83,7 @@ "InPlanePhaseEncodingDirection": "COL ", "FlipAngle": 90, "VariableFlipAngleFlag": "N ", - "SAR": 0.06899448999726, + "SAR": 0.07076621454172, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", @@ -92,25 +92,25 @@ "Private_0019_100a": 36, "Private_0019_100b": 1176000, "Private_0019_1011": "No", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], - "Private_0019_1015": [-654.02409649,-660.65060234,-27.67319298], + "Private_0019_1015": [-643.1807227100001,-663.66265106,-41.52861404], "Private_0019_1016": 7.02, "Private_0019_1017": 1, "Private_0019_1018": 2700, "Private_0019_1028": 28.345, - "Private_0019_1029": [0,832.5,512.5,192.5,1022.50000001,702.5,385.00000001,65,895,575,257.50000001,1087.50000001,767.5,447.50000001,130,960.00000001,640,320.00000001,0,832.5,512.5,192.5,1022.50000001,702.5,385.00000001,65,895,575,257.50000001,1087.50000001,767.5,447.50000001,130,960.00000001,640,320.00000001], - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810363937512400983.0.0.0", + "Private_0019_1029": [0,830,509.99999999,190,1022.50000001,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,447.49999999,127.5,957.5,637.5,320.00000001,0,830,509.99999999,190,1022.50000001,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,447.49999999,127.5,957.5,637.5,320.00000001], + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110434387384500983.0.0.0", "StudyID": "1 ", "SeriesNumber": 4, "AcquisitionNumber": 2, "InstanceNumber": 2, - "ImagePositionPatient": [-654.02409648895,-660.6506023406999,-27.673192977905], + "ImagePositionPatient": [-643.18072271347,-663.66265106201,-41.528614044189], "ImageOrientationPatient": [1,0,0,0,1,0], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", - "SliceLocation": -27.673192977905, + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", + "SliceLocation": -41.528614044189, "ImageComments": "Unaliased MB2\/PE2 ", "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", @@ -122,19 +122,19 @@ "HighBit": 15, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 36127, - "WindowCenter": 10802, - "WindowWidth": 23456, + "LargestImagePixelValue": 30752, + "WindowCenter": 9818, + "WindowWidth": 20898, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 36, "EchoColumnPosition": 36, "EchoPartitionPosition": 32, - "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", + "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", "ICE_Dims": "X_1_1_1_2_1_1_19_1_1_1_1_20", "ProtocolSliceNumber": 0, "RealDwellTime": 2700, @@ -146,33 +146,33 @@ "NumberOfImagesInMosaic": 36, "SliceNormalVector": [0,0,1], "TimeAfterStart": 7.02, - "ImaAbsTablePosition": [0,0,-1259], + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, - "SlicePosition_PCS": [-654.02409649,-660.65060234,-27.67319298], + "SlicePosition_PCS": [-643.1807227100001,-663.66265106,-41.52861404], "MultistepIndex": 0, "ImaRelTablePosition": [0,0,0], - "ImaCoilString": "HC1-6", + "ImaCoilString": "HC1-7", "RFSWDDataType": "predicted", "GSWDDataType": "predicted", "BandwidthPerPixelPhaseEncode": 28.345, - "MosaicRefAcqTimes": [0,832.5,512.5,192.5,1022.50000001,702.5,385.00000001,65,895,575,257.50000001,1087.50000001,767.5,447.50000001,130,960.00000001,640,320.00000001,0,832.5,512.5,192.5,1022.50000001,702.5,385.00000001,65,895,575,257.50000001,1087.50000001,767.5,447.50000001,130,960.00000001,640,320.00000001], + "MosaicRefAcqTimes": [0,830,509.99999999,190,1022.50000001,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,447.49999999,127.5,957.5,637.5,320.00000001,0,830,509.99999999,190,1022.50000001,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,447.49999999,127.5,957.5,637.5,320.00000001], "ImageHistory": [ "ChannelMixing:ND=true_CMM=1_CDM=1", "CC:SoS" ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,83.82082859,83.82082859], + "Sed": [1000000,85.97584465,85.97584465], "SequenceFileOwner": "USER", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -188,7 +188,7 @@ "CoilForGradient": "void", "CoilForGradient2": "AS82", "CoilId": [255,0,4877,0,0,4875,4876,4865,4866,0,0], - "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,17848,0,0,0,0,0,0], + "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,21093,0,0,0,0,0,0], "MrProtocolVersion": 51130001, "PositivePCSDirections": "+LPH", "RelTablePosition": [0,0,0], @@ -196,22 +196,22 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 1, "SliceResolution": 1, - "AbsTablePosition": -1259, - "CoilString": "HC1-6", + "AbsTablePosition": -1268, + "CoilString": "HC1-7", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, "Isocentered": 0, "MrPhoenixProtocol": { "ulVersion": 51130001, "tSequenceFileName": "%CustomerSeq%\\cmrr_mbep2d_bold", - "tProtocolName": "cmrr_mbep2d_bold_mb2_task_fat", + "tProtocolName": "cmrr_mbep2d_bold_mb2_task_nfat", "tdefaultEVAProt": "%SiemensEvaDefProt%\\BOLD\\t-test_10B10A_moco.evp", - "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", - "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", - "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", + "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", + "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", + "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 1, "ucEnableNoiseAdjust": 1, @@ -239,7 +239,7 @@ "ucCoilCombineMode": 1, "ucFlipAngleMode": 1, "lTOM": 1, - "lProtID": -17, + "lProtID": -19, "lSequenceID": 20, "ucReadOutMode": 1, "ucBold3dPace": 1, @@ -272,64 +272,64 @@ "bEddyCompensationValid": 1, "bB0CompensationValid": 1, "bCrossTermCompensationValid": 1, - "lOffsetX": 2892, - "lOffsetY": -4178, - "lOffsetZ": 1682, + "lOffsetX": 2919, + "lOffsetY": -4319, + "lOffsetZ": 1708, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, - "alShimCurrent": [537,-3,134,-260,31] + "alShimCurrent": [548,17,-139,-131,3] }, "sRXSPEC": { "lGain": 1, @@ -354,9 +354,9 @@ "dPhaseFOV": 216, "dReadoutFOV": 216, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -540,8 +540,8 @@ "lDecouplingType": 1, "lNOEType": 1, "lExcitationType": 1, - "lFinalMatrixSizePhase": 20180918, - "lFinalMatrixSizeRead": 103638, + "lFinalMatrixSizePhase": 20180911, + "lFinalMatrixSizeRead": 104343, "lFinalMatrixSizeSlice": 36, "lSpecAppl": 1, "lSpectralSuppression": 1 @@ -601,9 +601,9 @@ "Laterality": 0, "SliceInformation": { "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -629,7 +629,7 @@ ] }, "sWipMemBlock": { - "tFree": "be4d0899-1131-4ad1-ba7f-82a509804652||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", + "tFree": "15b158ff-e003-4779-9866-0eb3605172db||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", "alFree": [8,0,6400,5120,0,0,0,1,0,3,11,0,0,2,1,0,1,1,1,1,10,40000,100000,1,0,2,1,1,0,100,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,1,1], "adFree": [1,12,3,12] }, @@ -709,12 +709,12 @@ "FlowCompensation": "No", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.34026247,0], - "TablePositionOrigin": [0,0,-1259], - "FmriExternalInfo": "be4d0899-1131-4ad1-ba7f-82a509804652||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", - "B1rms": [100,0.97026165], + "SARMostCriticalAspect": [3.2,0.34900014,0], + "TablePositionOrigin": [0,0,-1268], + "FmriExternalInfo": "15b158ff-e003-4779-9866-0eb3605172db||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", + "B1rms": [100,0.96850168], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "NONE", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -725,9 +725,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -736,14 +736,14 @@ "Private_0051_100b": "72*72 ", "Private_0051_100c": "FoV 1296*1296 ", "Private_0051_100e": "Tra ", - "Private_0051_100f": "HC1-6 ", + "Private_0051_100f": "HC1-7 ", "Private_0051_1012": "TP 0", "Private_0051_1013": "+LPH", "Private_0051_1016": "M\/MB\/ND\/MOSAIC", "Private_0051_1017": "SL 3.0", "Private_0051_1018": "EXT ", "Private_0051_1019": "A1\/FS ", - "StartOfPixelData": 165378, + "StartOfPixelData": 173538, "SizeOfPixelData": 373248, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/f1558-0004-00002-000002-01.nii b/example1/source/002/s01558/nii/f1558-0004-00002-000002-01.nii index 86d4647..83ed2fc 100644 --- a/example1/source/002/s01558/nii/f1558-0004-00002-000002-01.nii +++ b/example1/source/002/s01558/nii/f1558-0004-00002-000002-01.nii @@ -1 +1 @@ -f1558-0004-00002-000002-01.nii \ No newline at end of file +f1512-0004-00002-000002-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/f1558-0004-00003-000003-01.json b/example1/source/002/s01558/nii/f1558-0004-00003-000003-01.json index 06a43f6..2725c44 100644 --- a/example1/source/002/s01558/nii/f1558-0004-00003-000003-01.json +++ b/example1/source/002/s01558/nii/f1558-0004-00003-000003-01.json @@ -19,36 +19,36 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810364892360301386", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110435342821001386", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\M\\MB\\ND\\MOSAIC ", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 38228.896, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 38667.822, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810364892360301386", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 38228.886, - "AcquisitionTime": 38207.76, - "ContentTime": 38228.896, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110435342821001386", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 38667.813, + "AcquisitionTime": 38631.7775, + "ContentTime": 38667.822, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", "InstitutionAddress": "Allee du 6 Aout 8,Liege,Brussels,BE,4000", "StationName": "AWP66021", "StudyDescription": "protocols^studies ", - "SeriesDescription": "cmrr_mbep2d_bold_mb2_task_fat ", + "SeriesDescription": "cmrr_mbep2d_bold_mb2_task_nfat", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -62,11 +62,11 @@ "RepetitionTime": 1170, "EchoTime": 30, "NumberOfAverages": 1, - "ImagingFrequency": 123.254424, + "ImagingFrequency": 123.254353, "ImagedNucleus": "1H", "EchoNumbers": 1, "MagneticFieldStrength": 3, - "SpacingBetweenSlices": 3.7499999455043, + "SpacingBetweenSlices": 3.7499998910086, "NumberOfPhaseEncodingSteps": 72, "EchoTrainLength": 72, "PercentSampling": 100, @@ -74,8 +74,8 @@ "PixelBandwidth": 2570, "DeviceSerialNumber": "66021 ", "SoftwareVersions": "syngo MR E11", - "ProtocolName": "cmrr_mbep2d_bold_mb2_task_fat ", - "TriggerTime": 8292.5, + "ProtocolName": "cmrr_mbep2d_bold_mb2_task_nfat", + "TriggerTime": 8295, "NominalInterval": 0, "CardiacNumberOfImages": 1, "TransmitCoilName": "Body", @@ -83,7 +83,7 @@ "InPlanePhaseEncodingDirection": "COL ", "FlipAngle": 90, "VariableFlipAngleFlag": "N ", - "SAR": 0.06899448999726, + "SAR": 0.07076621454172, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", @@ -92,25 +92,25 @@ "Private_0019_100a": 36, "Private_0019_100b": 1176000, "Private_0019_1011": "No", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], - "Private_0019_1015": [-654.02409649,-660.65060234,-27.67319298], + "Private_0019_1015": [-643.1807227100001,-663.66265106,-41.52861404], "Private_0019_1016": 8.19, "Private_0019_1017": 1, "Private_0019_1018": 2700, "Private_0019_1028": 28.345, - "Private_0019_1029": [0,832.5,512.50000001,192.5,1022.50000001,702.5,385.00000001,65,895,575.00000001,257.50000001,1087.50000001,767.5,447.50000001,130,960.00000001,640,320.00000001,0,832.5,512.50000001,192.5,1022.50000001,702.5,385.00000001,65,895,575.00000001,257.50000001,1087.50000001,767.5,447.50000001,130,960.00000001,640,320.00000001], - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810363937512400983.0.0.0", + "Private_0019_1029": [0,830,510.00000001,190,1022.50000001,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,447.50000001,127.5,957.5,637.5,320.00000001,0,830,510.00000001,190,1022.50000001,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,447.50000001,127.5,957.5,637.5,320.00000001], + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110434387384500983.0.0.0", "StudyID": "1 ", "SeriesNumber": 4, "AcquisitionNumber": 3, "InstanceNumber": 3, - "ImagePositionPatient": [-654.02409648895,-660.6506023406999,-27.673192977905], + "ImagePositionPatient": [-643.18072271347,-663.66265106201,-41.528614044189], "ImageOrientationPatient": [1,0,0,0,1,0], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", - "SliceLocation": -27.673192977905, + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", + "SliceLocation": -41.528614044189, "ImageComments": "Unaliased MB2\/PE2 ", "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", @@ -122,19 +122,19 @@ "HighBit": 15, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 36248, - "WindowCenter": 10800, - "WindowWidth": 23452, + "LargestImagePixelValue": 30546, + "WindowCenter": 9821, + "WindowWidth": 20907, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 36, "EchoColumnPosition": 36, "EchoPartitionPosition": 32, - "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", + "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", "ICE_Dims": "X_1_1_1_3_1_1_19_1_1_1_1_20", "ProtocolSliceNumber": 0, "RealDwellTime": 2700, @@ -146,33 +146,33 @@ "NumberOfImagesInMosaic": 36, "SliceNormalVector": [0,0,1], "TimeAfterStart": 8.19, - "ImaAbsTablePosition": [0,0,-1259], + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, - "SlicePosition_PCS": [-654.02409649,-660.65060234,-27.67319298], + "SlicePosition_PCS": [-643.1807227100001,-663.66265106,-41.52861404], "MultistepIndex": 0, "ImaRelTablePosition": [0,0,0], - "ImaCoilString": "HC1-6", + "ImaCoilString": "HC1-7", "RFSWDDataType": "predicted", "GSWDDataType": "predicted", "BandwidthPerPixelPhaseEncode": 28.345, - "MosaicRefAcqTimes": [0,832.5,512.50000001,192.5,1022.50000001,702.5,385.00000001,65,895,575.00000001,257.50000001,1087.50000001,767.5,447.50000001,130,960.00000001,640,320.00000001,0,832.5,512.50000001,192.5,1022.50000001,702.5,385.00000001,65,895,575.00000001,257.50000001,1087.50000001,767.5,447.50000001,130,960.00000001,640,320.00000001], + "MosaicRefAcqTimes": [0,830,510.00000001,190,1022.50000001,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,447.50000001,127.5,957.5,637.5,320.00000001,0,830,510.00000001,190,1022.50000001,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,447.50000001,127.5,957.5,637.5,320.00000001], "ImageHistory": [ "ChannelMixing:ND=true_CMM=1_CDM=1", "CC:SoS" ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,83.82082859,83.82082859], + "Sed": [1000000,85.97584465,85.97584465], "SequenceFileOwner": "USER", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -188,7 +188,7 @@ "CoilForGradient": "void", "CoilForGradient2": "AS82", "CoilId": [255,0,4877,0,0,4875,4876,4865,4866,0,0], - "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,17848,0,0,0,0,0,0], + "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,21093,0,0,0,0,0,0], "MrProtocolVersion": 51130001, "PositivePCSDirections": "+LPH", "RelTablePosition": [0,0,0], @@ -196,22 +196,22 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 1, "SliceResolution": 1, - "AbsTablePosition": -1259, - "CoilString": "HC1-6", + "AbsTablePosition": -1268, + "CoilString": "HC1-7", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, "Isocentered": 0, "MrPhoenixProtocol": { "ulVersion": 51130001, "tSequenceFileName": "%CustomerSeq%\\cmrr_mbep2d_bold", - "tProtocolName": "cmrr_mbep2d_bold_mb2_task_fat", + "tProtocolName": "cmrr_mbep2d_bold_mb2_task_nfat", "tdefaultEVAProt": "%SiemensEvaDefProt%\\BOLD\\t-test_10B10A_moco.evp", - "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", - "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", - "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", + "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", + "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", + "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 1, "ucEnableNoiseAdjust": 1, @@ -239,7 +239,7 @@ "ucCoilCombineMode": 1, "ucFlipAngleMode": 1, "lTOM": 1, - "lProtID": -17, + "lProtID": -19, "lSequenceID": 20, "ucReadOutMode": 1, "ucBold3dPace": 1, @@ -272,64 +272,64 @@ "bEddyCompensationValid": 1, "bB0CompensationValid": 1, "bCrossTermCompensationValid": 1, - "lOffsetX": 2892, - "lOffsetY": -4178, - "lOffsetZ": 1682, + "lOffsetX": 2919, + "lOffsetY": -4319, + "lOffsetZ": 1708, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, - "alShimCurrent": [537,-3,134,-260,31] + "alShimCurrent": [548,17,-139,-131,3] }, "sRXSPEC": { "lGain": 1, @@ -354,9 +354,9 @@ "dPhaseFOV": 216, "dReadoutFOV": 216, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -540,8 +540,8 @@ "lDecouplingType": 1, "lNOEType": 1, "lExcitationType": 1, - "lFinalMatrixSizePhase": 20180918, - "lFinalMatrixSizeRead": 103638, + "lFinalMatrixSizePhase": 20180911, + "lFinalMatrixSizeRead": 104343, "lFinalMatrixSizeSlice": 36, "lSpecAppl": 1, "lSpectralSuppression": 1 @@ -601,9 +601,9 @@ "Laterality": 0, "SliceInformation": { "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -629,7 +629,7 @@ ] }, "sWipMemBlock": { - "tFree": "be4d0899-1131-4ad1-ba7f-82a509804652||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", + "tFree": "15b158ff-e003-4779-9866-0eb3605172db||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", "alFree": [8,0,6400,5120,0,0,0,1,0,3,11,0,0,2,1,0,1,1,1,1,10,40000,100000,1,0,2,1,1,0,100,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,1,1], "adFree": [1,12,3,12] }, @@ -709,12 +709,12 @@ "FlowCompensation": "No", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.34026247,0], - "TablePositionOrigin": [0,0,-1259], - "FmriExternalInfo": "be4d0899-1131-4ad1-ba7f-82a509804652||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", - "B1rms": [100,0.97026165], + "SARMostCriticalAspect": [3.2,0.34900014,0], + "TablePositionOrigin": [0,0,-1268], + "FmriExternalInfo": "15b158ff-e003-4779-9866-0eb3605172db||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", + "B1rms": [100,0.96850168], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "NONE", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -725,9 +725,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -736,14 +736,14 @@ "Private_0051_100b": "72*72 ", "Private_0051_100c": "FoV 1296*1296 ", "Private_0051_100e": "Tra ", - "Private_0051_100f": "HC1-6 ", + "Private_0051_100f": "HC1-7 ", "Private_0051_1012": "TP 0", "Private_0051_1013": "+LPH", "Private_0051_1016": "M\/MB\/ND\/MOSAIC", "Private_0051_1017": "SL 3.0", "Private_0051_1018": "EXT ", "Private_0051_1019": "A1\/FS ", - "StartOfPixelData": 165378, + "StartOfPixelData": 173538, "SizeOfPixelData": 373248, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/f1558-0004-00003-000003-01.nii b/example1/source/002/s01558/nii/f1558-0004-00003-000003-01.nii index e80a44d..2d95248 100644 --- a/example1/source/002/s01558/nii/f1558-0004-00003-000003-01.nii +++ b/example1/source/002/s01558/nii/f1558-0004-00003-000003-01.nii @@ -1 +1 @@ -f1558-0004-00003-000003-01.nii \ No newline at end of file +f1512-0004-00003-000003-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/f1558-0004-00004-000004-01.json b/example1/source/002/s01558/nii/f1558-0004-00004-000004-01.json index 496724b..436db51 100644 --- a/example1/source/002/s01558/nii/f1558-0004-00004-000004-01.json +++ b/example1/source/002/s01558/nii/f1558-0004-00004-000004-01.json @@ -19,36 +19,36 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.201809181036509397401496", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110435461067801496", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\M\\MB\\ND\\MOSAIC ", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 38228.898, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 38667.825, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.201809181036509397401496", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 38228.886, - "AcquisitionTime": 38208.93, - "ContentTime": 38228.898, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110435461067801496", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 38667.813, + "AcquisitionTime": 38632.9475, + "ContentTime": 38667.825, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", "InstitutionAddress": "Allee du 6 Aout 8,Liege,Brussels,BE,4000", "StationName": "AWP66021", "StudyDescription": "protocols^studies ", - "SeriesDescription": "cmrr_mbep2d_bold_mb2_task_fat ", + "SeriesDescription": "cmrr_mbep2d_bold_mb2_task_nfat", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -62,11 +62,11 @@ "RepetitionTime": 1170, "EchoTime": 30, "NumberOfAverages": 1, - "ImagingFrequency": 123.254424, + "ImagingFrequency": 123.254353, "ImagedNucleus": "1H", "EchoNumbers": 1, "MagneticFieldStrength": 3, - "SpacingBetweenSlices": 3.7499999455043, + "SpacingBetweenSlices": 3.7499998910086, "NumberOfPhaseEncodingSteps": 72, "EchoTrainLength": 72, "PercentSampling": 100, @@ -74,8 +74,8 @@ "PixelBandwidth": 2570, "DeviceSerialNumber": "66021 ", "SoftwareVersions": "syngo MR E11", - "ProtocolName": "cmrr_mbep2d_bold_mb2_task_fat ", - "TriggerTime": 9462.5, + "ProtocolName": "cmrr_mbep2d_bold_mb2_task_nfat", + "TriggerTime": 9465, "NominalInterval": 0, "CardiacNumberOfImages": 1, "TransmitCoilName": "Body", @@ -83,7 +83,7 @@ "InPlanePhaseEncodingDirection": "COL ", "FlipAngle": 90, "VariableFlipAngleFlag": "N ", - "SAR": 0.06899448999726, + "SAR": 0.07076621454172, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", @@ -92,25 +92,25 @@ "Private_0019_100a": 36, "Private_0019_100b": 1176000, "Private_0019_1011": "No", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], - "Private_0019_1015": [-654.02409649,-660.65060234,-27.67319298], + "Private_0019_1015": [-643.1807227100001,-663.66265106,-41.52861404], "Private_0019_1016": 9.359999999999999, "Private_0019_1017": 1, "Private_0019_1018": 2700, "Private_0019_1028": 28.345, - "Private_0019_1029": [0,832.5,512.50000001,192.5,1022.50000001,702.50000001,385.00000001,65,895,575.00000001,257.50000001,1087.50000001,767.5,447.50000001,130,960.00000001,640.00000001,320.00000001,0,832.5,512.50000001,192.5,1022.50000001,702.50000001,385.00000001,65,895,575.00000001,257.50000001,1087.50000001,767.5,447.50000001,130,960.00000001,640.00000001,320.00000001], - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810363937512400983.0.0.0", + "Private_0019_1029": [0,830,510.00000001,190,1022.50000001,702.5,382.50000001,62.5,892.5,575.00000001,255,1085.00000001,765,447.50000001,127.5,957.5,637.50000001,320.00000001,0,830,510.00000001,190,1022.50000001,702.5,382.50000001,62.5,892.5,575.00000001,255,1085.00000001,765,447.50000001,127.5,957.5,637.50000001,320.00000001], + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110434387384500983.0.0.0", "StudyID": "1 ", "SeriesNumber": 4, "AcquisitionNumber": 4, "InstanceNumber": 4, - "ImagePositionPatient": [-654.02409648895,-660.6506023406999,-27.673192977905], + "ImagePositionPatient": [-643.18072271347,-663.66265106201,-41.528614044189], "ImageOrientationPatient": [1,0,0,0,1,0], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", - "SliceLocation": -27.673192977905, + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", + "SliceLocation": -41.528614044189, "ImageComments": "Unaliased MB2\/PE2 ", "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", @@ -122,19 +122,19 @@ "HighBit": 15, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 36540, - "WindowCenter": 10790, - "WindowWidth": 23421, + "LargestImagePixelValue": 30314, + "WindowCenter": 9805, + "WindowWidth": 20876, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 36, "EchoColumnPosition": 36, "EchoPartitionPosition": 32, - "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", + "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", "ICE_Dims": "X_1_1_1_4_1_1_19_1_1_1_1_20", "ProtocolSliceNumber": 0, "RealDwellTime": 2700, @@ -146,33 +146,33 @@ "NumberOfImagesInMosaic": 36, "SliceNormalVector": [0,0,1], "TimeAfterStart": 9.359999999999999, - "ImaAbsTablePosition": [0,0,-1259], + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, - "SlicePosition_PCS": [-654.02409649,-660.65060234,-27.67319298], + "SlicePosition_PCS": [-643.1807227100001,-663.66265106,-41.52861404], "MultistepIndex": 0, "ImaRelTablePosition": [0,0,0], - "ImaCoilString": "HC1-6", + "ImaCoilString": "HC1-7", "RFSWDDataType": "predicted", "GSWDDataType": "predicted", "BandwidthPerPixelPhaseEncode": 28.345, - "MosaicRefAcqTimes": [0,832.5,512.50000001,192.5,1022.50000001,702.50000001,385.00000001,65,895,575.00000001,257.50000001,1087.50000001,767.5,447.50000001,130,960.00000001,640.00000001,320.00000001,0,832.5,512.50000001,192.5,1022.50000001,702.50000001,385.00000001,65,895,575.00000001,257.50000001,1087.50000001,767.5,447.50000001,130,960.00000001,640.00000001,320.00000001], + "MosaicRefAcqTimes": [0,830,510.00000001,190,1022.50000001,702.5,382.50000001,62.5,892.5,575.00000001,255,1085.00000001,765,447.50000001,127.5,957.5,637.50000001,320.00000001,0,830,510.00000001,190,1022.50000001,702.5,382.50000001,62.5,892.5,575.00000001,255,1085.00000001,765,447.50000001,127.5,957.5,637.50000001,320.00000001], "ImageHistory": [ "ChannelMixing:ND=true_CMM=1_CDM=1", "CC:SoS" ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,83.82082859,83.82082859], + "Sed": [1000000,85.97584465,85.97584465], "SequenceFileOwner": "USER", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -188,7 +188,7 @@ "CoilForGradient": "void", "CoilForGradient2": "AS82", "CoilId": [255,0,4877,0,0,4875,4876,4865,4866,0,0], - "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,17848,0,0,0,0,0,0], + "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,21093,0,0,0,0,0,0], "MrProtocolVersion": 51130001, "PositivePCSDirections": "+LPH", "RelTablePosition": [0,0,0], @@ -196,22 +196,22 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 1, "SliceResolution": 1, - "AbsTablePosition": -1259, - "CoilString": "HC1-6", + "AbsTablePosition": -1268, + "CoilString": "HC1-7", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, "Isocentered": 0, "MrPhoenixProtocol": { "ulVersion": 51130001, "tSequenceFileName": "%CustomerSeq%\\cmrr_mbep2d_bold", - "tProtocolName": "cmrr_mbep2d_bold_mb2_task_fat", + "tProtocolName": "cmrr_mbep2d_bold_mb2_task_nfat", "tdefaultEVAProt": "%SiemensEvaDefProt%\\BOLD\\t-test_10B10A_moco.evp", - "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", - "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", - "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", + "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", + "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", + "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 1, "ucEnableNoiseAdjust": 1, @@ -239,7 +239,7 @@ "ucCoilCombineMode": 1, "ucFlipAngleMode": 1, "lTOM": 1, - "lProtID": -17, + "lProtID": -19, "lSequenceID": 20, "ucReadOutMode": 1, "ucBold3dPace": 1, @@ -272,64 +272,64 @@ "bEddyCompensationValid": 1, "bB0CompensationValid": 1, "bCrossTermCompensationValid": 1, - "lOffsetX": 2892, - "lOffsetY": -4178, - "lOffsetZ": 1682, + "lOffsetX": 2919, + "lOffsetY": -4319, + "lOffsetZ": 1708, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, - "alShimCurrent": [537,-3,134,-260,31] + "alShimCurrent": [548,17,-139,-131,3] }, "sRXSPEC": { "lGain": 1, @@ -354,9 +354,9 @@ "dPhaseFOV": 216, "dReadoutFOV": 216, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -540,8 +540,8 @@ "lDecouplingType": 1, "lNOEType": 1, "lExcitationType": 1, - "lFinalMatrixSizePhase": 20180918, - "lFinalMatrixSizeRead": 103638, + "lFinalMatrixSizePhase": 20180911, + "lFinalMatrixSizeRead": 104343, "lFinalMatrixSizeSlice": 36, "lSpecAppl": 1, "lSpectralSuppression": 1 @@ -601,9 +601,9 @@ "Laterality": 0, "SliceInformation": { "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -629,7 +629,7 @@ ] }, "sWipMemBlock": { - "tFree": "be4d0899-1131-4ad1-ba7f-82a509804652||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", + "tFree": "15b158ff-e003-4779-9866-0eb3605172db||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", "alFree": [8,0,6400,5120,0,0,0,1,0,3,11,0,0,2,1,0,1,1,1,1,10,40000,100000,1,0,2,1,1,0,100,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,1,1], "adFree": [1,12,3,12] }, @@ -709,12 +709,12 @@ "FlowCompensation": "No", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.34026247,0], - "TablePositionOrigin": [0,0,-1259], - "FmriExternalInfo": "be4d0899-1131-4ad1-ba7f-82a509804652||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", - "B1rms": [100,0.97026165], + "SARMostCriticalAspect": [3.2,0.34900014,0], + "TablePositionOrigin": [0,0,-1268], + "FmriExternalInfo": "15b158ff-e003-4779-9866-0eb3605172db||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", + "B1rms": [100,0.96850168], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "NONE", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -725,9 +725,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -736,14 +736,14 @@ "Private_0051_100b": "72*72 ", "Private_0051_100c": "FoV 1296*1296 ", "Private_0051_100e": "Tra ", - "Private_0051_100f": "HC1-6 ", + "Private_0051_100f": "HC1-7 ", "Private_0051_1012": "TP 0", "Private_0051_1013": "+LPH", "Private_0051_1016": "M\/MB\/ND\/MOSAIC", "Private_0051_1017": "SL 3.0", "Private_0051_1018": "EXT ", "Private_0051_1019": "A1\/FS ", - "StartOfPixelData": 165374, + "StartOfPixelData": 173538, "SizeOfPixelData": 373248, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/f1558-0004-00004-000004-01.nii b/example1/source/002/s01558/nii/f1558-0004-00004-000004-01.nii index b735aa4..1eee85d 100644 --- a/example1/source/002/s01558/nii/f1558-0004-00004-000004-01.nii +++ b/example1/source/002/s01558/nii/f1558-0004-00004-000004-01.nii @@ -1 +1 @@ -f1558-0004-00004-000004-01.nii \ No newline at end of file +f1512-0004-00004-000004-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/f1558-0004-00005-000005-01.json b/example1/source/002/s01558/nii/f1558-0004-00005-000005-01.json index 9951a07..ed3a029 100644 --- a/example1/source/002/s01558/nii/f1558-0004-00005-000005-01.json +++ b/example1/source/002/s01558/nii/f1558-0004-00005-000005-01.json @@ -19,36 +19,36 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810365126403201606", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110435576613101606", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\M\\MB\\ND\\MOSAIC ", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 38228.901, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 38667.827, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810365126403201606", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 38228.886, - "AcquisitionTime": 38210.1, - "ContentTime": 38228.901, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110435576613101606", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 38667.813, + "AcquisitionTime": 38634.1175, + "ContentTime": 38667.827, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", "InstitutionAddress": "Allee du 6 Aout 8,Liege,Brussels,BE,4000", "StationName": "AWP66021", "StudyDescription": "protocols^studies ", - "SeriesDescription": "cmrr_mbep2d_bold_mb2_task_fat ", + "SeriesDescription": "cmrr_mbep2d_bold_mb2_task_nfat", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -62,11 +62,11 @@ "RepetitionTime": 1170, "EchoTime": 30, "NumberOfAverages": 1, - "ImagingFrequency": 123.254424, + "ImagingFrequency": 123.254353, "ImagedNucleus": "1H", "EchoNumbers": 1, "MagneticFieldStrength": 3, - "SpacingBetweenSlices": 3.7499999455043, + "SpacingBetweenSlices": 3.7499998910086, "NumberOfPhaseEncodingSteps": 72, "EchoTrainLength": 72, "PercentSampling": 100, @@ -74,8 +74,8 @@ "PixelBandwidth": 2570, "DeviceSerialNumber": "66021 ", "SoftwareVersions": "syngo MR E11", - "ProtocolName": "cmrr_mbep2d_bold_mb2_task_fat ", - "TriggerTime": 10632.5, + "ProtocolName": "cmrr_mbep2d_bold_mb2_task_nfat", + "TriggerTime": 10635, "NominalInterval": 0, "CardiacNumberOfImages": 1, "TransmitCoilName": "Body", @@ -83,7 +83,7 @@ "InPlanePhaseEncodingDirection": "COL ", "FlipAngle": 90, "VariableFlipAngleFlag": "N ", - "SAR": 0.06899448999726, + "SAR": 0.07076621454172, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", @@ -92,25 +92,25 @@ "Private_0019_100a": 36, "Private_0019_100b": 1176000, "Private_0019_1011": "No", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], - "Private_0019_1015": [-654.02409649,-660.65060234,-27.67319298], + "Private_0019_1015": [-643.1807227100001,-663.66265106,-41.52861404], "Private_0019_1016": 10.53, "Private_0019_1017": 1, "Private_0019_1018": 2700, "Private_0019_1028": 28.345, - "Private_0019_1029": [0,832.49999999,512.5,192.49999999,1022.49999999,702.5,384.99999999,64.99999999000001,894.99999999,575,257.49999999,1087.49999999,767.49999999,447.49999999,129.99999999,959.99999999,640,319.99999999,0,832.49999999,512.5,192.49999999,1022.49999999,702.5,384.99999999,64.99999999000001,894.99999999,575,257.49999999,1087.49999999,767.49999999,447.49999999,129.99999999,959.99999999,640,319.99999999], - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810363937512400983.0.0.0", + "Private_0019_1029": [0,830,510.00000001,190,1022.50000001,702.50000001,382.50000001,62.5,892.5,575.00000001,255,1085.00000001,765.00000001,447.50000001,127.5,957.5,637.50000001,320.00000001,0,830,510.00000001,190,1022.50000001,702.50000001,382.50000001,62.5,892.5,575.00000001,255,1085.00000001,765.00000001,447.50000001,127.5,957.5,637.50000001,320.00000001], + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110434387384500983.0.0.0", "StudyID": "1 ", "SeriesNumber": 4, "AcquisitionNumber": 5, "InstanceNumber": 5, - "ImagePositionPatient": [-654.02409648895,-660.6506023406999,-27.673192977905], + "ImagePositionPatient": [-643.18072271347,-663.66265106201,-41.528614044189], "ImageOrientationPatient": [1,0,0,0,1,0], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", - "SliceLocation": -27.673192977905, + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", + "SliceLocation": -41.528614044189, "ImageComments": "Unaliased MB2\/PE2 ", "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", @@ -122,19 +122,19 @@ "HighBit": 15, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 36534, - "WindowCenter": 10782, - "WindowWidth": 23398, + "LargestImagePixelValue": 31255, + "WindowCenter": 9805, + "WindowWidth": 20867, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 36, "EchoColumnPosition": 36, "EchoPartitionPosition": 32, - "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", + "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", "ICE_Dims": "X_1_1_1_5_1_1_19_1_1_1_1_20", "ProtocolSliceNumber": 0, "RealDwellTime": 2700, @@ -146,33 +146,33 @@ "NumberOfImagesInMosaic": 36, "SliceNormalVector": [0,0,1], "TimeAfterStart": 10.53, - "ImaAbsTablePosition": [0,0,-1259], + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, - "SlicePosition_PCS": [-654.02409649,-660.65060234,-27.67319298], + "SlicePosition_PCS": [-643.1807227100001,-663.66265106,-41.52861404], "MultistepIndex": 0, "ImaRelTablePosition": [0,0,0], - "ImaCoilString": "HC1-6", + "ImaCoilString": "HC1-7", "RFSWDDataType": "predicted", "GSWDDataType": "predicted", "BandwidthPerPixelPhaseEncode": 28.345, - "MosaicRefAcqTimes": [0,832.49999999,512.5,192.49999999,1022.49999999,702.5,384.99999999,64.99999999000001,894.99999999,575,257.49999999,1087.49999999,767.49999999,447.49999999,129.99999999,959.99999999,640,319.99999999,0,832.49999999,512.5,192.49999999,1022.49999999,702.5,384.99999999,64.99999999000001,894.99999999,575,257.49999999,1087.49999999,767.49999999,447.49999999,129.99999999,959.99999999,640,319.99999999], + "MosaicRefAcqTimes": [0,830,510.00000001,190,1022.50000001,702.50000001,382.50000001,62.5,892.5,575.00000001,255,1085.00000001,765.00000001,447.50000001,127.5,957.5,637.50000001,320.00000001,0,830,510.00000001,190,1022.50000001,702.50000001,382.50000001,62.5,892.5,575.00000001,255,1085.00000001,765.00000001,447.50000001,127.5,957.5,637.50000001,320.00000001], "ImageHistory": [ "ChannelMixing:ND=true_CMM=1_CDM=1", "CC:SoS" ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,83.82082859,83.82082859], + "Sed": [1000000,85.97584465,85.97584465], "SequenceFileOwner": "USER", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -188,7 +188,7 @@ "CoilForGradient": "void", "CoilForGradient2": "AS82", "CoilId": [255,0,4877,0,0,4875,4876,4865,4866,0,0], - "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,17848,0,0,0,0,0,0], + "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,21093,0,0,0,0,0,0], "MrProtocolVersion": 51130001, "PositivePCSDirections": "+LPH", "RelTablePosition": [0,0,0], @@ -196,22 +196,22 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 1, "SliceResolution": 1, - "AbsTablePosition": -1259, - "CoilString": "HC1-6", + "AbsTablePosition": -1268, + "CoilString": "HC1-7", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, "Isocentered": 0, "MrPhoenixProtocol": { "ulVersion": 51130001, "tSequenceFileName": "%CustomerSeq%\\cmrr_mbep2d_bold", - "tProtocolName": "cmrr_mbep2d_bold_mb2_task_fat", + "tProtocolName": "cmrr_mbep2d_bold_mb2_task_nfat", "tdefaultEVAProt": "%SiemensEvaDefProt%\\BOLD\\t-test_10B10A_moco.evp", - "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", - "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", - "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", + "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", + "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", + "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 1, "ucEnableNoiseAdjust": 1, @@ -239,7 +239,7 @@ "ucCoilCombineMode": 1, "ucFlipAngleMode": 1, "lTOM": 1, - "lProtID": -17, + "lProtID": -19, "lSequenceID": 20, "ucReadOutMode": 1, "ucBold3dPace": 1, @@ -272,64 +272,64 @@ "bEddyCompensationValid": 1, "bB0CompensationValid": 1, "bCrossTermCompensationValid": 1, - "lOffsetX": 2892, - "lOffsetY": -4178, - "lOffsetZ": 1682, + "lOffsetX": 2919, + "lOffsetY": -4319, + "lOffsetZ": 1708, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, - "alShimCurrent": [537,-3,134,-260,31] + "alShimCurrent": [548,17,-139,-131,3] }, "sRXSPEC": { "lGain": 1, @@ -354,9 +354,9 @@ "dPhaseFOV": 216, "dReadoutFOV": 216, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -540,8 +540,8 @@ "lDecouplingType": 1, "lNOEType": 1, "lExcitationType": 1, - "lFinalMatrixSizePhase": 20180918, - "lFinalMatrixSizeRead": 103638, + "lFinalMatrixSizePhase": 20180911, + "lFinalMatrixSizeRead": 104343, "lFinalMatrixSizeSlice": 36, "lSpecAppl": 1, "lSpectralSuppression": 1 @@ -601,9 +601,9 @@ "Laterality": 0, "SliceInformation": { "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -629,7 +629,7 @@ ] }, "sWipMemBlock": { - "tFree": "be4d0899-1131-4ad1-ba7f-82a509804652||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", + "tFree": "15b158ff-e003-4779-9866-0eb3605172db||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", "alFree": [8,0,6400,5120,0,0,0,1,0,3,11,0,0,2,1,0,1,1,1,1,10,40000,100000,1,0,2,1,1,0,100,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,1,1], "adFree": [1,12,3,12] }, @@ -709,12 +709,12 @@ "FlowCompensation": "No", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.34026247,0], - "TablePositionOrigin": [0,0,-1259], - "FmriExternalInfo": "be4d0899-1131-4ad1-ba7f-82a509804652||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", - "B1rms": [100,0.97026165], + "SARMostCriticalAspect": [3.2,0.34900014,0], + "TablePositionOrigin": [0,0,-1268], + "FmriExternalInfo": "15b158ff-e003-4779-9866-0eb3605172db||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", + "B1rms": [100,0.96850168], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "NONE", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -725,9 +725,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -736,14 +736,14 @@ "Private_0051_100b": "72*72 ", "Private_0051_100c": "FoV 1296*1296 ", "Private_0051_100e": "Tra ", - "Private_0051_100f": "HC1-6 ", + "Private_0051_100f": "HC1-7 ", "Private_0051_1012": "TP 0", "Private_0051_1013": "+LPH", "Private_0051_1016": "M\/MB\/ND\/MOSAIC", "Private_0051_1017": "SL 3.0", "Private_0051_1018": "EXT ", "Private_0051_1019": "A1\/FS ", - "StartOfPixelData": 165378, + "StartOfPixelData": 173542, "SizeOfPixelData": 373248, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/f1558-0004-00005-000005-01.nii b/example1/source/002/s01558/nii/f1558-0004-00005-000005-01.nii index c886b36..0942211 100644 --- a/example1/source/002/s01558/nii/f1558-0004-00005-000005-01.nii +++ b/example1/source/002/s01558/nii/f1558-0004-00005-000005-01.nii @@ -1 +1 @@ -f1558-0004-00005-000005-01.nii \ No newline at end of file +f1512-0004-00005-000005-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/f1558-0006-00001-000001-01.json b/example1/source/002/s01558/nii/f1558-0006-00001-000001-01.json index 2b7be5e..9251760 100644 --- a/example1/source/002/s01558/nii/f1558-0006-00001-000001-01.json +++ b/example1/source/002/s01558/nii/f1558-0006-00001-000001-01.json @@ -19,24 +19,24 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810564612119194956", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111004496392393756", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\M\\MB\\ND\\MOSAIC ", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 39410.609, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 39649.026, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810564612119194956", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 39410.598, - "AcquisitionTime": 39404.42, - "ContentTime": 39410.609, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111004496392393756", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 39649.016, + "AcquisitionTime": 39642.425, + "ContentTime": 39649.026, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", @@ -46,9 +46,9 @@ "SeriesDescription": "cmrr_mbep2d_bold_mb2_invertpe ", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -62,11 +62,11 @@ "RepetitionTime": 1170, "EchoTime": 30, "NumberOfAverages": 1, - "ImagingFrequency": 123.25443, + "ImagingFrequency": 123.254362, "ImagedNucleus": "1H", "EchoNumbers": 1, "MagneticFieldStrength": 3, - "SpacingBetweenSlices": 3.7499999455043, + "SpacingBetweenSlices": 3.7499998910086, "NumberOfPhaseEncodingSteps": 72, "EchoTrainLength": 72, "PercentSampling": 100, @@ -83,7 +83,7 @@ "InPlanePhaseEncodingDirection": "COL ", "FlipAngle": 90, "VariableFlipAngleFlag": "N ", - "SAR": 0.06373875426554999, + "SAR": 0.06537551787267, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", @@ -92,25 +92,25 @@ "Private_0019_100a": 36, "Private_0019_100b": 12000, "Private_0019_1011": "No", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], - "Private_0019_1015": [-654.02409649,-660.65060234,-27.67319298], + "Private_0019_1015": [-643.1807227100001,-663.66265106,-41.52861404], "Private_0019_1016": 5.85, "Private_0019_1017": 1, "Private_0019_1018": 2700, "Private_0019_1028": 28.345, - "Private_0019_1029": [0,830,509.99999999,192.5,1022.50000001,702.5,382.50000001,62.5,895,575,255,1085.00000001,767.5,447.49999999,127.5,957.5,637.5,320.00000001,0,830,509.99999999,192.5,1022.50000001,702.5,382.50000001,62.5,895,575,255,1085.00000001,767.5,447.49999999,127.5,957.5,637.5,320.00000001], - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810563863112694757.0.0.0", + "Private_0019_1029": [0,830,512.5,192.49999999,1022.49999999,702.5,384.99999999,65,895,575,254.99999999,1087.49999999,767.5,447.49999999,127.5,959.99999999,640,319.99999999,0,830,512.5,192.49999999,1022.49999999,702.5,384.99999999,65,895,575,254.99999999,1087.49999999,767.5,447.49999999,127.5,959.99999999,640,319.99999999], + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.201809111100374732393529.0.0.0", "StudyID": "1 ", "SeriesNumber": 6, "AcquisitionNumber": 1, "InstanceNumber": 1, - "ImagePositionPatient": [-654.02409648895,-660.6506023406999,-27.673192977905], + "ImagePositionPatient": [-643.18072271347,-663.66265106201,-41.528614044189], "ImageOrientationPatient": [1,0,0,0,1,0], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", - "SliceLocation": -27.673192977905, + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", + "SliceLocation": -41.528614044189, "ImageComments": "Unaliased MB2\/PE2 ", "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", @@ -122,19 +122,19 @@ "HighBit": 15, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 35858, - "WindowCenter": 10890, - "WindowWidth": 23667, + "LargestImagePixelValue": 29121, + "WindowCenter": 9855, + "WindowWidth": 20982, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 36, "EchoColumnPosition": 36, "EchoPartitionPosition": 32, - "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", + "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", "ICE_Dims": "X_1_1_1_1_1_1_19_1_1_1_1_22", "ProtocolSliceNumber": 0, "RealDwellTime": 2700, @@ -146,33 +146,33 @@ "NumberOfImagesInMosaic": 36, "SliceNormalVector": [0,0,1], "TimeAfterStart": 5.85, - "ImaAbsTablePosition": [0,0,-1259], + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, - "SlicePosition_PCS": [-654.02409649,-660.65060234,-27.67319298], + "SlicePosition_PCS": [-643.1807227100001,-663.66265106,-41.52861404], "MultistepIndex": 0, "ImaRelTablePosition": [0,0,0], - "ImaCoilString": "HC1-6", + "ImaCoilString": "HC1-7", "RFSWDDataType": "predicted", "GSWDDataType": "predicted", "BandwidthPerPixelPhaseEncode": 28.345, - "MosaicRefAcqTimes": [0,830,509.99999999,192.5,1022.50000001,702.5,382.50000001,62.5,895,575,255,1085.00000001,767.5,447.49999999,127.5,957.5,637.5,320.00000001,0,830,509.99999999,192.5,1022.50000001,702.5,382.50000001,62.5,895,575,255,1085.00000001,767.5,447.49999999,127.5,957.5,637.5,320.00000001], + "MosaicRefAcqTimes": [0,830,512.5,192.49999999,1022.49999999,702.5,384.99999999,65,895,575,254.99999999,1087.49999999,767.5,447.49999999,127.5,959.99999999,640,319.99999999,0,830,512.5,192.49999999,1022.49999999,702.5,384.99999999,65,895,575,254.99999999,1087.49999999,767.5,447.49999999,127.5,959.99999999,640,319.99999999], "ImageHistory": [ "ChannelMixing:ND=true_CMM=1_CDM=1", "CC:SoS" ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,72.61987026,72.61987026], + "Sed": [1000000,73.57558098,73.57558098], "SequenceFileOwner": "USER", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -188,7 +188,7 @@ "CoilForGradient": "void", "CoilForGradient2": "AS82", "CoilId": [255,0,4877,0,0,4875,4876,4865,4866,0,0], - "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,17848,0,0,0,0,0,0], + "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,21093,0,0,0,0,0,0], "MrProtocolVersion": 51130001, "PositivePCSDirections": "+LPH", "RelTablePosition": [0,0,0], @@ -196,8 +196,8 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 1, "SliceResolution": 1, - "AbsTablePosition": -1259, - "CoilString": "HC1-6", + "AbsTablePosition": -1268, + "CoilString": "HC1-7", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, "Isocentered": 0, @@ -206,12 +206,12 @@ "tSequenceFileName": "%CustomerSeq%\\cmrr_mbep2d_bold", "tProtocolName": "cmrr_mbep2d_bold_mb2_invertpe", "tdefaultEVAProt": "%SiemensEvaDefProt%\\BOLD\\t-test_10B10A_moco.evp", - "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", - "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", - "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", + "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", + "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", + "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 1, "ucEnableNoiseAdjust": 1, @@ -239,7 +239,7 @@ "ucCoilCombineMode": 1, "ucFlipAngleMode": 1, "lTOM": 1, - "lProtID": -24, + "lProtID": -28, "lSequenceID": 22, "ucReadOutMode": 1, "ucBold3dPace": 1, @@ -272,64 +272,64 @@ "bEddyCompensationValid": 1, "bB0CompensationValid": 1, "bCrossTermCompensationValid": 1, - "lOffsetX": 2892, - "lOffsetY": -4178, - "lOffsetZ": 1682, + "lOffsetX": 2919, + "lOffsetY": -4319, + "lOffsetZ": 1708, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, - "alShimCurrent": [537,-3,134,-260,31] + "alShimCurrent": [548,17,-139,-131,3] }, "sRXSPEC": { "lGain": 1, @@ -354,9 +354,9 @@ "dPhaseFOV": 216, "dReadoutFOV": 216, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -540,8 +540,8 @@ "lDecouplingType": 1, "lNOEType": 1, "lExcitationType": 1, - "lFinalMatrixSizePhase": 20180918, - "lFinalMatrixSizeRead": 105638, + "lFinalMatrixSizePhase": 20180911, + "lFinalMatrixSizeRead": 110036, "lFinalMatrixSizeSlice": 36, "lSpecAppl": 1, "lSpectralSuppression": 1 @@ -601,9 +601,9 @@ "Laterality": 0, "SliceInformation": { "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -629,7 +629,7 @@ ] }, "sWipMemBlock": { - "tFree": "e1272d4b-3310-4cf4-a73f-f021f9b04ce8||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", + "tFree": "0b3cf219-6642-4ed3-8592-b41c131a1c8a||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", "alFree": [264,0,6400,5120,0,0,0,1,0,3,11,0,0,2,1,0,1,1,1,1,10,40000,100000,1,0,2,1,1,0,100,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,1,1], "adFree": [1,12,3,12] }, @@ -709,12 +709,12 @@ "FlowCompensation": "No", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.31434258,0], - "TablePositionOrigin": [0,0,-1259], - "FmriExternalInfo": "e1272d4b-3310-4cf4-a73f-f021f9b04ce8||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", - "B1rms": [100,0.93257431], + "SARMostCriticalAspect": [3.2,0.32241466,0], + "TablePositionOrigin": [0,0,-1268], + "FmriExternalInfo": "0b3cf219-6642-4ed3-8592-b41c131a1c8a||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", + "B1rms": [100,0.9308827200000001], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "NONE", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -725,9 +725,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -736,14 +736,14 @@ "Private_0051_100b": "72*72 ", "Private_0051_100c": "FoV 1296*1296 ", "Private_0051_100e": "Tra ", - "Private_0051_100f": "HC1-6 ", + "Private_0051_100f": "HC1-7 ", "Private_0051_1012": "TP 0", "Private_0051_1013": "+LPH", "Private_0051_1016": "M\/MB\/ND\/MOSAIC", "Private_0051_1017": "SL 3.0", "Private_0051_1018": "EXT ", "Private_0051_1019": "A1\/FS ", - "StartOfPixelData": 157432, + "StartOfPixelData": 165598, "SizeOfPixelData": 373248, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/f1558-0006-00001-000001-01.nii b/example1/source/002/s01558/nii/f1558-0006-00001-000001-01.nii index a2b3eee..c0e4813 100644 --- a/example1/source/002/s01558/nii/f1558-0006-00001-000001-01.nii +++ b/example1/source/002/s01558/nii/f1558-0006-00001-000001-01.nii @@ -1 +1 @@ -f1558-0006-00001-000001-01.nii \ No newline at end of file +f1512-0006-00001-000001-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/f1558-0006-00002-000002-01.json b/example1/source/002/s01558/nii/f1558-0006-00002-000002-01.json index c8fd0b1..8dc097f 100644 --- a/example1/source/002/s01558/nii/f1558-0006-00002-000002-01.json +++ b/example1/source/002/s01558/nii/f1558-0006-00002-000002-01.json @@ -19,24 +19,24 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.201809181056472141595050", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111004545292193822", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\M\\MB\\ND\\MOSAIC ", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 39410.613, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 39649.032, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.201809181056472141595050", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 39410.598, - "AcquisitionTime": 39405.59, - "ContentTime": 39410.613, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111004545292193822", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 39649.016, + "AcquisitionTime": 39643.595, + "ContentTime": 39649.032, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", @@ -46,9 +46,9 @@ "SeriesDescription": "cmrr_mbep2d_bold_mb2_invertpe ", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -62,11 +62,11 @@ "RepetitionTime": 1170, "EchoTime": 30, "NumberOfAverages": 1, - "ImagingFrequency": 123.25443, + "ImagingFrequency": 123.254362, "ImagedNucleus": "1H", "EchoNumbers": 1, "MagneticFieldStrength": 3, - "SpacingBetweenSlices": 3.7499999455043, + "SpacingBetweenSlices": 3.7499998910086, "NumberOfPhaseEncodingSteps": 72, "EchoTrainLength": 72, "PercentSampling": 100, @@ -83,7 +83,7 @@ "InPlanePhaseEncodingDirection": "COL ", "FlipAngle": 90, "VariableFlipAngleFlag": "N ", - "SAR": 0.06373875426554999, + "SAR": 0.06537551787267, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", @@ -92,25 +92,25 @@ "Private_0019_100a": 36, "Private_0019_100b": 12000, "Private_0019_1011": "No", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], - "Private_0019_1015": [-654.02409649,-660.65060234,-27.67319298], + "Private_0019_1015": [-643.1807227100001,-663.66265106,-41.52861404], "Private_0019_1016": 7.02, "Private_0019_1017": 1, "Private_0019_1018": 2700, "Private_0019_1028": 28.345, - "Private_0019_1029": [0,830,510.00000001,192.5,1022.50000001,702.5,382.50000001,62.5,895,575,255,1085.00000001,767.5,447.50000001,127.5,957.5,637.5,320.00000001,0,830,510.00000001,192.5,1022.50000001,702.5,382.50000001,62.5,895,575,255,1085.00000001,767.5,447.50000001,127.5,957.5,637.5,320.00000001], - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810563863112694757.0.0.0", + "Private_0019_1029": [0,830,512.5,192.5,1022.49999999,702.5,384.99999999,65,895,575,255,1087.49999999,767.5,447.49999999,127.5,959.99999999,640,319.99999999,0,830,512.5,192.5,1022.49999999,702.5,384.99999999,65,895,575,255,1087.49999999,767.5,447.49999999,127.5,959.99999999,640,319.99999999], + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.201809111100374732393529.0.0.0", "StudyID": "1 ", "SeriesNumber": 6, "AcquisitionNumber": 2, "InstanceNumber": 2, - "ImagePositionPatient": [-654.02409648895,-660.6506023406999,-27.673192977905], + "ImagePositionPatient": [-643.18072271347,-663.66265106201,-41.528614044189], "ImageOrientationPatient": [1,0,0,0,1,0], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", - "SliceLocation": -27.673192977905, + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", + "SliceLocation": -41.528614044189, "ImageComments": "Unaliased MB2\/PE2 ", "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", @@ -122,19 +122,19 @@ "HighBit": 15, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 35879, - "WindowCenter": 10879, - "WindowWidth": 23631, + "LargestImagePixelValue": 29154, + "WindowCenter": 9839, + "WindowWidth": 20943, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 36, "EchoColumnPosition": 36, "EchoPartitionPosition": 32, - "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", + "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", "ICE_Dims": "X_1_1_1_2_1_1_19_1_1_1_1_22", "ProtocolSliceNumber": 0, "RealDwellTime": 2700, @@ -146,33 +146,33 @@ "NumberOfImagesInMosaic": 36, "SliceNormalVector": [0,0,1], "TimeAfterStart": 7.02, - "ImaAbsTablePosition": [0,0,-1259], + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, - "SlicePosition_PCS": [-654.02409649,-660.65060234,-27.67319298], + "SlicePosition_PCS": [-643.1807227100001,-663.66265106,-41.52861404], "MultistepIndex": 0, "ImaRelTablePosition": [0,0,0], - "ImaCoilString": "HC1-6", + "ImaCoilString": "HC1-7", "RFSWDDataType": "predicted", "GSWDDataType": "predicted", "BandwidthPerPixelPhaseEncode": 28.345, - "MosaicRefAcqTimes": [0,830,510.00000001,192.5,1022.50000001,702.5,382.50000001,62.5,895,575,255,1085.00000001,767.5,447.50000001,127.5,957.5,637.5,320.00000001,0,830,510.00000001,192.5,1022.50000001,702.5,382.50000001,62.5,895,575,255,1085.00000001,767.5,447.50000001,127.5,957.5,637.5,320.00000001], + "MosaicRefAcqTimes": [0,830,512.5,192.5,1022.49999999,702.5,384.99999999,65,895,575,255,1087.49999999,767.5,447.49999999,127.5,959.99999999,640,319.99999999,0,830,512.5,192.5,1022.49999999,702.5,384.99999999,65,895,575,255,1087.49999999,767.5,447.49999999,127.5,959.99999999,640,319.99999999], "ImageHistory": [ "ChannelMixing:ND=true_CMM=1_CDM=1", "CC:SoS" ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,72.61987026,72.61987026], + "Sed": [1000000,73.57558098,73.57558098], "SequenceFileOwner": "USER", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -188,7 +188,7 @@ "CoilForGradient": "void", "CoilForGradient2": "AS82", "CoilId": [255,0,4877,0,0,4875,4876,4865,4866,0,0], - "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,17848,0,0,0,0,0,0], + "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,21093,0,0,0,0,0,0], "MrProtocolVersion": 51130001, "PositivePCSDirections": "+LPH", "RelTablePosition": [0,0,0], @@ -196,8 +196,8 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 1, "SliceResolution": 1, - "AbsTablePosition": -1259, - "CoilString": "HC1-6", + "AbsTablePosition": -1268, + "CoilString": "HC1-7", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, "Isocentered": 0, @@ -206,12 +206,12 @@ "tSequenceFileName": "%CustomerSeq%\\cmrr_mbep2d_bold", "tProtocolName": "cmrr_mbep2d_bold_mb2_invertpe", "tdefaultEVAProt": "%SiemensEvaDefProt%\\BOLD\\t-test_10B10A_moco.evp", - "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", - "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", - "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", + "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", + "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", + "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 1, "ucEnableNoiseAdjust": 1, @@ -239,7 +239,7 @@ "ucCoilCombineMode": 1, "ucFlipAngleMode": 1, "lTOM": 1, - "lProtID": -24, + "lProtID": -28, "lSequenceID": 22, "ucReadOutMode": 1, "ucBold3dPace": 1, @@ -272,64 +272,64 @@ "bEddyCompensationValid": 1, "bB0CompensationValid": 1, "bCrossTermCompensationValid": 1, - "lOffsetX": 2892, - "lOffsetY": -4178, - "lOffsetZ": 1682, + "lOffsetX": 2919, + "lOffsetY": -4319, + "lOffsetZ": 1708, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, - "alShimCurrent": [537,-3,134,-260,31] + "alShimCurrent": [548,17,-139,-131,3] }, "sRXSPEC": { "lGain": 1, @@ -354,9 +354,9 @@ "dPhaseFOV": 216, "dReadoutFOV": 216, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -540,8 +540,8 @@ "lDecouplingType": 1, "lNOEType": 1, "lExcitationType": 1, - "lFinalMatrixSizePhase": 20180918, - "lFinalMatrixSizeRead": 105638, + "lFinalMatrixSizePhase": 20180911, + "lFinalMatrixSizeRead": 110036, "lFinalMatrixSizeSlice": 36, "lSpecAppl": 1, "lSpectralSuppression": 1 @@ -601,9 +601,9 @@ "Laterality": 0, "SliceInformation": { "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -629,7 +629,7 @@ ] }, "sWipMemBlock": { - "tFree": "e1272d4b-3310-4cf4-a73f-f021f9b04ce8||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", + "tFree": "0b3cf219-6642-4ed3-8592-b41c131a1c8a||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", "alFree": [264,0,6400,5120,0,0,0,1,0,3,11,0,0,2,1,0,1,1,1,1,10,40000,100000,1,0,2,1,1,0,100,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,1,1], "adFree": [1,12,3,12] }, @@ -709,12 +709,12 @@ "FlowCompensation": "No", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.31434258,0], - "TablePositionOrigin": [0,0,-1259], - "FmriExternalInfo": "e1272d4b-3310-4cf4-a73f-f021f9b04ce8||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", - "B1rms": [100,0.93257431], + "SARMostCriticalAspect": [3.2,0.32241466,0], + "TablePositionOrigin": [0,0,-1268], + "FmriExternalInfo": "0b3cf219-6642-4ed3-8592-b41c131a1c8a||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", + "B1rms": [100,0.9308827200000001], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "NONE", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -725,9 +725,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -736,14 +736,14 @@ "Private_0051_100b": "72*72 ", "Private_0051_100c": "FoV 1296*1296 ", "Private_0051_100e": "Tra ", - "Private_0051_100f": "HC1-6 ", + "Private_0051_100f": "HC1-7 ", "Private_0051_1012": "TP 0", "Private_0051_1013": "+LPH", "Private_0051_1016": "M\/MB\/ND\/MOSAIC", "Private_0051_1017": "SL 3.0", "Private_0051_1018": "EXT ", "Private_0051_1019": "A1\/FS ", - "StartOfPixelData": 157440, + "StartOfPixelData": 165590, "SizeOfPixelData": 373248, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/f1558-0006-00002-000002-01.nii b/example1/source/002/s01558/nii/f1558-0006-00002-000002-01.nii index 9723676..bb2cf0c 100644 --- a/example1/source/002/s01558/nii/f1558-0006-00002-000002-01.nii +++ b/example1/source/002/s01558/nii/f1558-0006-00002-000002-01.nii @@ -1 +1 @@ -f1558-0006-00002-000002-01.nii \ No newline at end of file +f1512-0006-00002-000002-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/f1558-0006-00003-000003-01.json b/example1/source/002/s01558/nii/f1558-0006-00003-000003-01.json index 4b725b9..893c55a 100644 --- a/example1/source/002/s01558/nii/f1558-0006-00003-000003-01.json +++ b/example1/source/002/s01558/nii/f1558-0006-00003-000003-01.json @@ -19,24 +19,24 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810564825367195164", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111004659611793932", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\M\\MB\\ND\\MOSAIC ", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 39410.624, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 39649.043, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810564825367195164", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 39410.598, - "AcquisitionTime": 39406.76, - "ContentTime": 39410.624, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111004659611793932", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 39649.016, + "AcquisitionTime": 39644.765, + "ContentTime": 39649.043, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", @@ -46,9 +46,9 @@ "SeriesDescription": "cmrr_mbep2d_bold_mb2_invertpe ", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -62,11 +62,11 @@ "RepetitionTime": 1170, "EchoTime": 30, "NumberOfAverages": 1, - "ImagingFrequency": 123.25443, + "ImagingFrequency": 123.254362, "ImagedNucleus": "1H", "EchoNumbers": 1, "MagneticFieldStrength": 3, - "SpacingBetweenSlices": 3.7499999455043, + "SpacingBetweenSlices": 3.7499998910086, "NumberOfPhaseEncodingSteps": 72, "EchoTrainLength": 72, "PercentSampling": 100, @@ -83,7 +83,7 @@ "InPlanePhaseEncodingDirection": "COL ", "FlipAngle": 90, "VariableFlipAngleFlag": "N ", - "SAR": 0.06373875426554999, + "SAR": 0.06537551787267, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", @@ -92,25 +92,25 @@ "Private_0019_100a": 36, "Private_0019_100b": 12000, "Private_0019_1011": "No", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], - "Private_0019_1015": [-654.02409649,-660.65060234,-27.67319298], + "Private_0019_1015": [-643.1807227100001,-663.66265106,-41.52861404], "Private_0019_1016": 8.19, "Private_0019_1017": 1, "Private_0019_1018": 2700, "Private_0019_1028": 28.345, - "Private_0019_1029": [0,830,510.00000001,192.5,1022.50000001,702.5,382.50000001,62.5,895,575.00000001,255,1085.00000001,767.5,447.50000001,127.5,957.5,637.50000001,320.00000001,0,830,510.00000001,192.5,1022.50000001,702.5,382.50000001,62.5,895,575.00000001,255,1085.00000001,767.5,447.50000001,127.5,957.5,637.50000001,320.00000001], - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810563863112694757.0.0.0", + "Private_0019_1029": [0,830,512.5,192.5,1022.50000001,702.5,384.99999999,65,895,575,255,1087.49999999,767.5,447.49999999,127.5,960.00000001,640,320.00000001,0,830,512.5,192.5,1022.50000001,702.5,384.99999999,65,895,575,255,1087.49999999,767.5,447.49999999,127.5,960.00000001,640,320.00000001], + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.201809111100374732393529.0.0.0", "StudyID": "1 ", "SeriesNumber": 6, "AcquisitionNumber": 3, "InstanceNumber": 3, - "ImagePositionPatient": [-654.02409648895,-660.6506023406999,-27.673192977905], + "ImagePositionPatient": [-643.18072271347,-663.66265106201,-41.528614044189], "ImageOrientationPatient": [1,0,0,0,1,0], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", - "SliceLocation": -27.673192977905, + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", + "SliceLocation": -41.528614044189, "ImageComments": "Unaliased MB2\/PE2 ", "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", @@ -122,19 +122,19 @@ "HighBit": 15, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 36280, - "WindowCenter": 10871, - "WindowWidth": 23611, + "LargestImagePixelValue": 28932, + "WindowCenter": 9816, + "WindowWidth": 20890, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 36, "EchoColumnPosition": 36, "EchoPartitionPosition": 32, - "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", + "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", "ICE_Dims": "X_1_1_1_3_1_1_19_1_1_1_1_22", "ProtocolSliceNumber": 0, "RealDwellTime": 2700, @@ -146,33 +146,33 @@ "NumberOfImagesInMosaic": 36, "SliceNormalVector": [0,0,1], "TimeAfterStart": 8.19, - "ImaAbsTablePosition": [0,0,-1259], + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, - "SlicePosition_PCS": [-654.02409649,-660.65060234,-27.67319298], + "SlicePosition_PCS": [-643.1807227100001,-663.66265106,-41.52861404], "MultistepIndex": 0, "ImaRelTablePosition": [0,0,0], - "ImaCoilString": "HC1-6", + "ImaCoilString": "HC1-7", "RFSWDDataType": "predicted", "GSWDDataType": "predicted", "BandwidthPerPixelPhaseEncode": 28.345, - "MosaicRefAcqTimes": [0,830,510.00000001,192.5,1022.50000001,702.5,382.50000001,62.5,895,575.00000001,255,1085.00000001,767.5,447.50000001,127.5,957.5,637.50000001,320.00000001,0,830,510.00000001,192.5,1022.50000001,702.5,382.50000001,62.5,895,575.00000001,255,1085.00000001,767.5,447.50000001,127.5,957.5,637.50000001,320.00000001], + "MosaicRefAcqTimes": [0,830,512.5,192.5,1022.50000001,702.5,384.99999999,65,895,575,255,1087.49999999,767.5,447.49999999,127.5,960.00000001,640,320.00000001,0,830,512.5,192.5,1022.50000001,702.5,384.99999999,65,895,575,255,1087.49999999,767.5,447.49999999,127.5,960.00000001,640,320.00000001], "ImageHistory": [ "ChannelMixing:ND=true_CMM=1_CDM=1", "CC:SoS" ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,72.61987026,72.61987026], + "Sed": [1000000,73.57558098,73.57558098], "SequenceFileOwner": "USER", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -188,7 +188,7 @@ "CoilForGradient": "void", "CoilForGradient2": "AS82", "CoilId": [255,0,4877,0,0,4875,4876,4865,4866,0,0], - "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,17848,0,0,0,0,0,0], + "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,21093,0,0,0,0,0,0], "MrProtocolVersion": 51130001, "PositivePCSDirections": "+LPH", "RelTablePosition": [0,0,0], @@ -196,8 +196,8 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 1, "SliceResolution": 1, - "AbsTablePosition": -1259, - "CoilString": "HC1-6", + "AbsTablePosition": -1268, + "CoilString": "HC1-7", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, "Isocentered": 0, @@ -206,12 +206,12 @@ "tSequenceFileName": "%CustomerSeq%\\cmrr_mbep2d_bold", "tProtocolName": "cmrr_mbep2d_bold_mb2_invertpe", "tdefaultEVAProt": "%SiemensEvaDefProt%\\BOLD\\t-test_10B10A_moco.evp", - "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", - "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", - "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", + "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", + "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", + "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 1, "ucEnableNoiseAdjust": 1, @@ -239,7 +239,7 @@ "ucCoilCombineMode": 1, "ucFlipAngleMode": 1, "lTOM": 1, - "lProtID": -24, + "lProtID": -28, "lSequenceID": 22, "ucReadOutMode": 1, "ucBold3dPace": 1, @@ -272,64 +272,64 @@ "bEddyCompensationValid": 1, "bB0CompensationValid": 1, "bCrossTermCompensationValid": 1, - "lOffsetX": 2892, - "lOffsetY": -4178, - "lOffsetZ": 1682, + "lOffsetX": 2919, + "lOffsetY": -4319, + "lOffsetZ": 1708, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, - "alShimCurrent": [537,-3,134,-260,31] + "alShimCurrent": [548,17,-139,-131,3] }, "sRXSPEC": { "lGain": 1, @@ -354,9 +354,9 @@ "dPhaseFOV": 216, "dReadoutFOV": 216, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -540,8 +540,8 @@ "lDecouplingType": 1, "lNOEType": 1, "lExcitationType": 1, - "lFinalMatrixSizePhase": 20180918, - "lFinalMatrixSizeRead": 105638, + "lFinalMatrixSizePhase": 20180911, + "lFinalMatrixSizeRead": 110036, "lFinalMatrixSizeSlice": 36, "lSpecAppl": 1, "lSpectralSuppression": 1 @@ -601,9 +601,9 @@ "Laterality": 0, "SliceInformation": { "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -629,7 +629,7 @@ ] }, "sWipMemBlock": { - "tFree": "e1272d4b-3310-4cf4-a73f-f021f9b04ce8||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", + "tFree": "0b3cf219-6642-4ed3-8592-b41c131a1c8a||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", "alFree": [264,0,6400,5120,0,0,0,1,0,3,11,0,0,2,1,0,1,1,1,1,10,40000,100000,1,0,2,1,1,0,100,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,1,1], "adFree": [1,12,3,12] }, @@ -709,12 +709,12 @@ "FlowCompensation": "No", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.31434258,0], - "TablePositionOrigin": [0,0,-1259], - "FmriExternalInfo": "e1272d4b-3310-4cf4-a73f-f021f9b04ce8||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", - "B1rms": [100,0.93257431], + "SARMostCriticalAspect": [3.2,0.32241466,0], + "TablePositionOrigin": [0,0,-1268], + "FmriExternalInfo": "0b3cf219-6642-4ed3-8592-b41c131a1c8a||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", + "B1rms": [100,0.9308827200000001], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "NONE", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -725,9 +725,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -736,14 +736,14 @@ "Private_0051_100b": "72*72 ", "Private_0051_100c": "FoV 1296*1296 ", "Private_0051_100e": "Tra ", - "Private_0051_100f": "HC1-6 ", + "Private_0051_100f": "HC1-7 ", "Private_0051_1012": "TP 0", "Private_0051_1013": "+LPH", "Private_0051_1016": "M\/MB\/ND\/MOSAIC", "Private_0051_1017": "SL 3.0", "Private_0051_1018": "EXT ", "Private_0051_1019": "A1\/FS ", - "StartOfPixelData": 157440, + "StartOfPixelData": 165598, "SizeOfPixelData": 373248, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/f1558-0006-00003-000003-01.nii b/example1/source/002/s01558/nii/f1558-0006-00003-000003-01.nii index 1ef08bf..0c9e462 100644 --- a/example1/source/002/s01558/nii/f1558-0006-00003-000003-01.nii +++ b/example1/source/002/s01558/nii/f1558-0006-00003-000003-01.nii @@ -1 +1 @@ -f1558-0006-00003-000003-01.nii \ No newline at end of file +f1512-0006-00003-000003-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/f1558-0006-00004-000004-01.json b/example1/source/002/s01558/nii/f1558-0006-00004-000004-01.json index 8eb23c3..c57fc03 100644 --- a/example1/source/002/s01558/nii/f1558-0006-00004-000004-01.json +++ b/example1/source/002/s01558/nii/f1558-0006-00004-000004-01.json @@ -19,24 +19,24 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810564935437995270", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111004776622694042", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\M\\MB\\ND\\MOSAIC ", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 39410.627, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 39649.046, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810564935437995270", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 39410.598, - "AcquisitionTime": 39407.93, - "ContentTime": 39410.627, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111004776622694042", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 39649.016, + "AcquisitionTime": 39645.935, + "ContentTime": 39649.046, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", @@ -46,9 +46,9 @@ "SeriesDescription": "cmrr_mbep2d_bold_mb2_invertpe ", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -62,11 +62,11 @@ "RepetitionTime": 1170, "EchoTime": 30, "NumberOfAverages": 1, - "ImagingFrequency": 123.25443, + "ImagingFrequency": 123.254362, "ImagedNucleus": "1H", "EchoNumbers": 1, "MagneticFieldStrength": 3, - "SpacingBetweenSlices": 3.7499999455043, + "SpacingBetweenSlices": 3.7499998910086, "NumberOfPhaseEncodingSteps": 72, "EchoTrainLength": 72, "PercentSampling": 100, @@ -83,7 +83,7 @@ "InPlanePhaseEncodingDirection": "COL ", "FlipAngle": 90, "VariableFlipAngleFlag": "N ", - "SAR": 0.06373875426554999, + "SAR": 0.06537551787267, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", @@ -92,25 +92,25 @@ "Private_0019_100a": 36, "Private_0019_100b": 12000, "Private_0019_1011": "No", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], - "Private_0019_1015": [-654.02409649,-660.65060234,-27.67319298], + "Private_0019_1015": [-643.1807227100001,-663.66265106,-41.52861404], "Private_0019_1016": 9.359999999999999, "Private_0019_1017": 1, "Private_0019_1018": 2700, "Private_0019_1028": 28.345, - "Private_0019_1029": [0,830,510.00000001,192.5,1022.50000001,702.50000001,382.50000001,62.5,895,575.00000001,255,1085.00000001,767.5,447.50000001,127.5,957.5,637.50000001,320.00000001,0,830,510.00000001,192.5,1022.50000001,702.50000001,382.50000001,62.5,895,575.00000001,255,1085.00000001,767.5,447.50000001,127.5,957.5,637.50000001,320.00000001], - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810563863112694757.0.0.0", + "Private_0019_1029": [0,830,512.5,192.5,1022.50000001,702.5,385.00000001,65,895,575,255,1087.50000001,767.5,447.50000001,127.5,960.00000001,640,320.00000001,0,830,512.5,192.5,1022.50000001,702.5,385.00000001,65,895,575,255,1087.50000001,767.5,447.50000001,127.5,960.00000001,640,320.00000001], + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.201809111100374732393529.0.0.0", "StudyID": "1 ", "SeriesNumber": 6, "AcquisitionNumber": 4, "InstanceNumber": 4, - "ImagePositionPatient": [-654.02409648895,-660.6506023406999,-27.673192977905], + "ImagePositionPatient": [-643.18072271347,-663.66265106201,-41.528614044189], "ImageOrientationPatient": [1,0,0,0,1,0], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", - "SliceLocation": -27.673192977905, + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", + "SliceLocation": -41.528614044189, "ImageComments": "Unaliased MB2\/PE2 ", "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", @@ -122,19 +122,19 @@ "HighBit": 15, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 36029, - "WindowCenter": 10865, - "WindowWidth": 23593, + "LargestImagePixelValue": 28875, + "WindowCenter": 9798, + "WindowWidth": 20848, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 36, "EchoColumnPosition": 36, "EchoPartitionPosition": 32, - "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", + "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", "ICE_Dims": "X_1_1_1_4_1_1_19_1_1_1_1_22", "ProtocolSliceNumber": 0, "RealDwellTime": 2700, @@ -146,33 +146,33 @@ "NumberOfImagesInMosaic": 36, "SliceNormalVector": [0,0,1], "TimeAfterStart": 9.359999999999999, - "ImaAbsTablePosition": [0,0,-1259], + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, - "SlicePosition_PCS": [-654.02409649,-660.65060234,-27.67319298], + "SlicePosition_PCS": [-643.1807227100001,-663.66265106,-41.52861404], "MultistepIndex": 0, "ImaRelTablePosition": [0,0,0], - "ImaCoilString": "HC1-6", + "ImaCoilString": "HC1-7", "RFSWDDataType": "predicted", "GSWDDataType": "predicted", "BandwidthPerPixelPhaseEncode": 28.345, - "MosaicRefAcqTimes": [0,830,510.00000001,192.5,1022.50000001,702.50000001,382.50000001,62.5,895,575.00000001,255,1085.00000001,767.5,447.50000001,127.5,957.5,637.50000001,320.00000001,0,830,510.00000001,192.5,1022.50000001,702.50000001,382.50000001,62.5,895,575.00000001,255,1085.00000001,767.5,447.50000001,127.5,957.5,637.50000001,320.00000001], + "MosaicRefAcqTimes": [0,830,512.5,192.5,1022.50000001,702.5,385.00000001,65,895,575,255,1087.50000001,767.5,447.50000001,127.5,960.00000001,640,320.00000001,0,830,512.5,192.5,1022.50000001,702.5,385.00000001,65,895,575,255,1087.50000001,767.5,447.50000001,127.5,960.00000001,640,320.00000001], "ImageHistory": [ "ChannelMixing:ND=true_CMM=1_CDM=1", "CC:SoS" ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,72.61987026,72.61987026], + "Sed": [1000000,73.57558098,73.57558098], "SequenceFileOwner": "USER", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -188,7 +188,7 @@ "CoilForGradient": "void", "CoilForGradient2": "AS82", "CoilId": [255,0,4877,0,0,4875,4876,4865,4866,0,0], - "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,17848,0,0,0,0,0,0], + "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,21093,0,0,0,0,0,0], "MrProtocolVersion": 51130001, "PositivePCSDirections": "+LPH", "RelTablePosition": [0,0,0], @@ -196,8 +196,8 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 1, "SliceResolution": 1, - "AbsTablePosition": -1259, - "CoilString": "HC1-6", + "AbsTablePosition": -1268, + "CoilString": "HC1-7", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, "Isocentered": 0, @@ -206,12 +206,12 @@ "tSequenceFileName": "%CustomerSeq%\\cmrr_mbep2d_bold", "tProtocolName": "cmrr_mbep2d_bold_mb2_invertpe", "tdefaultEVAProt": "%SiemensEvaDefProt%\\BOLD\\t-test_10B10A_moco.evp", - "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", - "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", - "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", + "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", + "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", + "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 1, "ucEnableNoiseAdjust": 1, @@ -239,7 +239,7 @@ "ucCoilCombineMode": 1, "ucFlipAngleMode": 1, "lTOM": 1, - "lProtID": -24, + "lProtID": -28, "lSequenceID": 22, "ucReadOutMode": 1, "ucBold3dPace": 1, @@ -272,64 +272,64 @@ "bEddyCompensationValid": 1, "bB0CompensationValid": 1, "bCrossTermCompensationValid": 1, - "lOffsetX": 2892, - "lOffsetY": -4178, - "lOffsetZ": 1682, + "lOffsetX": 2919, + "lOffsetY": -4319, + "lOffsetZ": 1708, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, - "alShimCurrent": [537,-3,134,-260,31] + "alShimCurrent": [548,17,-139,-131,3] }, "sRXSPEC": { "lGain": 1, @@ -354,9 +354,9 @@ "dPhaseFOV": 216, "dReadoutFOV": 216, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -540,8 +540,8 @@ "lDecouplingType": 1, "lNOEType": 1, "lExcitationType": 1, - "lFinalMatrixSizePhase": 20180918, - "lFinalMatrixSizeRead": 105638, + "lFinalMatrixSizePhase": 20180911, + "lFinalMatrixSizeRead": 110036, "lFinalMatrixSizeSlice": 36, "lSpecAppl": 1, "lSpectralSuppression": 1 @@ -601,9 +601,9 @@ "Laterality": 0, "SliceInformation": { "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -629,7 +629,7 @@ ] }, "sWipMemBlock": { - "tFree": "e1272d4b-3310-4cf4-a73f-f021f9b04ce8||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", + "tFree": "0b3cf219-6642-4ed3-8592-b41c131a1c8a||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", "alFree": [264,0,6400,5120,0,0,0,1,0,3,11,0,0,2,1,0,1,1,1,1,10,40000,100000,1,0,2,1,1,0,100,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,1,1], "adFree": [1,12,3,12] }, @@ -709,12 +709,12 @@ "FlowCompensation": "No", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.31434258,0], - "TablePositionOrigin": [0,0,-1259], - "FmriExternalInfo": "e1272d4b-3310-4cf4-a73f-f021f9b04ce8||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", - "B1rms": [100,0.93257431], + "SARMostCriticalAspect": [3.2,0.32241466,0], + "TablePositionOrigin": [0,0,-1268], + "FmriExternalInfo": "0b3cf219-6642-4ed3-8592-b41c131a1c8a||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", + "B1rms": [100,0.9308827200000001], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "NONE", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -725,9 +725,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -736,14 +736,14 @@ "Private_0051_100b": "72*72 ", "Private_0051_100c": "FoV 1296*1296 ", "Private_0051_100e": "Tra ", - "Private_0051_100f": "HC1-6 ", + "Private_0051_100f": "HC1-7 ", "Private_0051_1012": "TP 0", "Private_0051_1013": "+LPH", "Private_0051_1016": "M\/MB\/ND\/MOSAIC", "Private_0051_1017": "SL 3.0", "Private_0051_1018": "EXT ", "Private_0051_1019": "A1\/FS ", - "StartOfPixelData": 157440, + "StartOfPixelData": 165598, "SizeOfPixelData": 373248, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/f1558-0006-00004-000004-01.nii b/example1/source/002/s01558/nii/f1558-0006-00004-000004-01.nii index ad28927..396bf95 100644 --- a/example1/source/002/s01558/nii/f1558-0006-00004-000004-01.nii +++ b/example1/source/002/s01558/nii/f1558-0006-00004-000004-01.nii @@ -1 +1 @@ -f1558-0006-00004-000004-01.nii \ No newline at end of file +f1512-0006-00004-000004-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/f1558-0006-00005-000005-01.json b/example1/source/002/s01558/nii/f1558-0006-00005-000005-01.json index b93597d..dc0d0df 100644 --- a/example1/source/002/s01558/nii/f1558-0006-00005-000005-01.json +++ b/example1/source/002/s01558/nii/f1558-0006-00005-000005-01.json @@ -19,24 +19,24 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810565052583895380", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111004893685494152", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\M\\MB\\ND\\MOSAIC ", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 39410.63, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 39649.048, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810565052583895380", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 39410.598, - "AcquisitionTime": 39409.1, - "ContentTime": 39410.63, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111004893685494152", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 39649.016, + "AcquisitionTime": 39647.105, + "ContentTime": 39649.048, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", @@ -46,9 +46,9 @@ "SeriesDescription": "cmrr_mbep2d_bold_mb2_invertpe ", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -62,11 +62,11 @@ "RepetitionTime": 1170, "EchoTime": 30, "NumberOfAverages": 1, - "ImagingFrequency": 123.25443, + "ImagingFrequency": 123.254362, "ImagedNucleus": "1H", "EchoNumbers": 1, "MagneticFieldStrength": 3, - "SpacingBetweenSlices": 3.7499999455043, + "SpacingBetweenSlices": 3.7499998910086, "NumberOfPhaseEncodingSteps": 72, "EchoTrainLength": 72, "PercentSampling": 100, @@ -83,7 +83,7 @@ "InPlanePhaseEncodingDirection": "COL ", "FlipAngle": 90, "VariableFlipAngleFlag": "N ", - "SAR": 0.06373875426554999, + "SAR": 0.06537551787267, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", @@ -92,25 +92,25 @@ "Private_0019_100a": 36, "Private_0019_100b": 12000, "Private_0019_1011": "No", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], - "Private_0019_1015": [-654.02409649,-660.65060234,-27.67319298], + "Private_0019_1015": [-643.1807227100001,-663.66265106,-41.52861404], "Private_0019_1016": 10.53, "Private_0019_1017": 1, "Private_0019_1018": 2700, "Private_0019_1028": 28.345, - "Private_0019_1029": [0,829.99999999,509.99999999,192.49999999,1022.49999999,702.5,382.49999999,62.5,894.99999999,575,254.99999999,1084.99999999,767.49999999,447.49999999,127.49999999,957.49999999,637.5,319.99999999,0,829.99999999,509.99999999,192.49999999,1022.49999999,702.5,382.49999999,62.5,894.99999999,575,254.99999999,1084.99999999,767.49999999,447.49999999,127.49999999,957.49999999,637.5,319.99999999], - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810563863112694757.0.0.0", + "Private_0019_1029": [0,830,512.5,192.5,1022.50000001,702.5,385.00000001,65,895,575,255,1087.50000001,767.5,447.50000001,127.5,960.00000001,640,320.00000001,0,830,512.5,192.5,1022.50000001,702.5,385.00000001,65,895,575,255,1087.50000001,767.5,447.50000001,127.5,960.00000001,640,320.00000001], + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.201809111100374732393529.0.0.0", "StudyID": "1 ", "SeriesNumber": 6, "AcquisitionNumber": 5, "InstanceNumber": 5, - "ImagePositionPatient": [-654.02409648895,-660.6506023406999,-27.673192977905], + "ImagePositionPatient": [-643.18072271347,-663.66265106201,-41.528614044189], "ImageOrientationPatient": [1,0,0,0,1,0], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", - "SliceLocation": -27.673192977905, + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", + "SliceLocation": -41.528614044189, "ImageComments": "Unaliased MB2\/PE2 ", "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", @@ -122,19 +122,19 @@ "HighBit": 15, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 36263, - "WindowCenter": 10863, - "WindowWidth": 23588, + "LargestImagePixelValue": 28766, + "WindowCenter": 9789, + "WindowWidth": 20823, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 36, "EchoColumnPosition": 36, "EchoPartitionPosition": 32, - "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", + "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", "ICE_Dims": "X_1_1_1_5_1_1_19_1_1_1_1_22", "ProtocolSliceNumber": 0, "RealDwellTime": 2700, @@ -146,33 +146,33 @@ "NumberOfImagesInMosaic": 36, "SliceNormalVector": [0,0,1], "TimeAfterStart": 10.53, - "ImaAbsTablePosition": [0,0,-1259], + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, - "SlicePosition_PCS": [-654.02409649,-660.65060234,-27.67319298], + "SlicePosition_PCS": [-643.1807227100001,-663.66265106,-41.52861404], "MultistepIndex": 0, "ImaRelTablePosition": [0,0,0], - "ImaCoilString": "HC1-6", + "ImaCoilString": "HC1-7", "RFSWDDataType": "predicted", "GSWDDataType": "predicted", "BandwidthPerPixelPhaseEncode": 28.345, - "MosaicRefAcqTimes": [0,829.99999999,509.99999999,192.49999999,1022.49999999,702.5,382.49999999,62.5,894.99999999,575,254.99999999,1084.99999999,767.49999999,447.49999999,127.49999999,957.49999999,637.5,319.99999999,0,829.99999999,509.99999999,192.49999999,1022.49999999,702.5,382.49999999,62.5,894.99999999,575,254.99999999,1084.99999999,767.49999999,447.49999999,127.49999999,957.49999999,637.5,319.99999999], + "MosaicRefAcqTimes": [0,830,512.5,192.5,1022.50000001,702.5,385.00000001,65,895,575,255,1087.50000001,767.5,447.50000001,127.5,960.00000001,640,320.00000001,0,830,512.5,192.5,1022.50000001,702.5,385.00000001,65,895,575,255,1087.50000001,767.5,447.50000001,127.5,960.00000001,640,320.00000001], "ImageHistory": [ "ChannelMixing:ND=true_CMM=1_CDM=1", "CC:SoS" ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,72.61987026,72.61987026], + "Sed": [1000000,73.57558098,73.57558098], "SequenceFileOwner": "USER", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -188,7 +188,7 @@ "CoilForGradient": "void", "CoilForGradient2": "AS82", "CoilId": [255,0,4877,0,0,4875,4876,4865,4866,0,0], - "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,17848,0,0,0,0,0,0], + "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,21093,0,0,0,0,0,0], "MrProtocolVersion": 51130001, "PositivePCSDirections": "+LPH", "RelTablePosition": [0,0,0], @@ -196,8 +196,8 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 1, "SliceResolution": 1, - "AbsTablePosition": -1259, - "CoilString": "HC1-6", + "AbsTablePosition": -1268, + "CoilString": "HC1-7", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, "Isocentered": 0, @@ -206,12 +206,12 @@ "tSequenceFileName": "%CustomerSeq%\\cmrr_mbep2d_bold", "tProtocolName": "cmrr_mbep2d_bold_mb2_invertpe", "tdefaultEVAProt": "%SiemensEvaDefProt%\\BOLD\\t-test_10B10A_moco.evp", - "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", - "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", - "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", + "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", + "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", + "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 1, "ucEnableNoiseAdjust": 1, @@ -239,7 +239,7 @@ "ucCoilCombineMode": 1, "ucFlipAngleMode": 1, "lTOM": 1, - "lProtID": -24, + "lProtID": -28, "lSequenceID": 22, "ucReadOutMode": 1, "ucBold3dPace": 1, @@ -272,64 +272,64 @@ "bEddyCompensationValid": 1, "bB0CompensationValid": 1, "bCrossTermCompensationValid": 1, - "lOffsetX": 2892, - "lOffsetY": -4178, - "lOffsetZ": 1682, + "lOffsetX": 2919, + "lOffsetY": -4319, + "lOffsetZ": 1708, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, - "alShimCurrent": [537,-3,134,-260,31] + "alShimCurrent": [548,17,-139,-131,3] }, "sRXSPEC": { "lGain": 1, @@ -354,9 +354,9 @@ "dPhaseFOV": 216, "dReadoutFOV": 216, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -540,8 +540,8 @@ "lDecouplingType": 1, "lNOEType": 1, "lExcitationType": 1, - "lFinalMatrixSizePhase": 20180918, - "lFinalMatrixSizeRead": 105638, + "lFinalMatrixSizePhase": 20180911, + "lFinalMatrixSizeRead": 110036, "lFinalMatrixSizeSlice": 36, "lSpecAppl": 1, "lSpectralSuppression": 1 @@ -601,9 +601,9 @@ "Laterality": 0, "SliceInformation": { "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -629,7 +629,7 @@ ] }, "sWipMemBlock": { - "tFree": "e1272d4b-3310-4cf4-a73f-f021f9b04ce8||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", + "tFree": "0b3cf219-6642-4ed3-8592-b41c131a1c8a||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", "alFree": [264,0,6400,5120,0,0,0,1,0,3,11,0,0,2,1,0,1,1,1,1,10,40000,100000,1,0,2,1,1,0,100,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,1,1], "adFree": [1,12,3,12] }, @@ -709,12 +709,12 @@ "FlowCompensation": "No", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.31434258,0], - "TablePositionOrigin": [0,0,-1259], - "FmriExternalInfo": "e1272d4b-3310-4cf4-a73f-f021f9b04ce8||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", - "B1rms": [100,0.93257431], + "SARMostCriticalAspect": [3.2,0.32241466,0], + "TablePositionOrigin": [0,0,-1268], + "FmriExternalInfo": "0b3cf219-6642-4ed3-8592-b41c131a1c8a||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", + "B1rms": [100,0.9308827200000001], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "NONE", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -725,9 +725,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -736,14 +736,14 @@ "Private_0051_100b": "72*72 ", "Private_0051_100c": "FoV 1296*1296 ", "Private_0051_100e": "Tra ", - "Private_0051_100f": "HC1-6 ", + "Private_0051_100f": "HC1-7 ", "Private_0051_1012": "TP 0", "Private_0051_1013": "+LPH", "Private_0051_1016": "M\/MB\/ND\/MOSAIC", "Private_0051_1017": "SL 3.0", "Private_0051_1018": "EXT ", "Private_0051_1019": "A1\/FS ", - "StartOfPixelData": 157444, + "StartOfPixelData": 165602, "SizeOfPixelData": 373248, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/f1558-0006-00005-000005-01.nii b/example1/source/002/s01558/nii/f1558-0006-00005-000005-01.nii index 68ad8d1..1b249e2 100644 --- a/example1/source/002/s01558/nii/f1558-0006-00005-000005-01.nii +++ b/example1/source/002/s01558/nii/f1558-0006-00005-000005-01.nii @@ -1 +1 @@ -f1558-0006-00005-000005-01.nii \ No newline at end of file +f1512-0006-00005-000005-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/f1558-0008-00001-000001-01.json b/example1/source/002/s01558/nii/f1558-0008-00001-000001-01.json index 1e8be98..b5a34a8 100644 --- a/example1/source/002/s01558/nii/f1558-0008-00001-000001-01.json +++ b/example1/source/002/s01558/nii/f1558-0008-00001-000001-01.json @@ -19,24 +19,24 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810573889390395585", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111035067565294381", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\M\\MB\\ND\\MOSAIC ", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 39488.819, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 39867.746, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810573889390395585", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 39488.816, - "AcquisitionTime": 39457.4075, - "ContentTime": 39488.819, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111035067565294381", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 39867.743, + "AcquisitionTime": 39828.435, + "ContentTime": 39867.746, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", @@ -46,9 +46,9 @@ "SeriesDescription": "cmrr_mbep2d_bold_mb2_rest ", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -62,11 +62,11 @@ "RepetitionTime": 1170, "EchoTime": 30, "NumberOfAverages": 1, - "ImagingFrequency": 123.25443, + "ImagingFrequency": 123.25436, "ImagedNucleus": "1H", "EchoNumbers": 1, "MagneticFieldStrength": 3, - "SpacingBetweenSlices": 3.7499999455043, + "SpacingBetweenSlices": 3.7499998910086, "NumberOfPhaseEncodingSteps": 72, "EchoTrainLength": 72, "PercentSampling": 100, @@ -75,7 +75,7 @@ "DeviceSerialNumber": "66021 ", "SoftwareVersions": "syngo MR E11", "ProtocolName": "cmrr_mbep2d_bold_mb2_rest ", - "TriggerTime": 5952.5, + "TriggerTime": 5955, "NominalInterval": 0, "CardiacNumberOfImages": 1, "TransmitCoilName": "Body", @@ -83,7 +83,7 @@ "InPlanePhaseEncodingDirection": "COL ", "FlipAngle": 90, "VariableFlipAngleFlag": "N ", - "SAR": 0.06890179251512001, + "SAR": 0.07067113944829, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", @@ -92,25 +92,25 @@ "Private_0019_100a": 36, "Private_0019_100b": 427000, "Private_0019_1011": "No", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], - "Private_0019_1015": [-654.02409649,-660.65060234,-27.67319298], + "Private_0019_1015": [-643.1807227100001,-663.66265106,-41.52861404], "Private_0019_1016": 5.85, "Private_0019_1017": 1, "Private_0019_1018": 2700, "Private_0019_1028": 28.345, - "Private_0019_1029": [0,830,512.5,192.5,1022.49999999,702.5,384.99999999,65,895,575,255,1087.49999999,767.5,447.49999999,127.5,959.99999999,640,319.99999999,0,830,512.5,192.5,1022.49999999,702.5,384.99999999,65,895,575,255,1087.49999999,767.5,447.49999999,127.5,959.99999999,640,319.99999999], - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810573141248895386.0.0.0", + "Private_0019_1029": [0,830,510.00000001,190,1020,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,445.00000001,127.5,957.5,637.5,317.5,0,830,510.00000001,190,1020,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,445.00000001,127.5,957.5,637.5,317.5], + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111034279259294158.0.0.0", "StudyID": "1 ", "SeriesNumber": 8, "AcquisitionNumber": 1, "InstanceNumber": 1, - "ImagePositionPatient": [-654.02409648895,-660.6506023406999,-27.673192977905], + "ImagePositionPatient": [-643.18072271347,-663.66265106201,-41.528614044189], "ImageOrientationPatient": [1,0,0,0,1,0], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", - "SliceLocation": -27.673192977905, + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", + "SliceLocation": -41.528614044189, "ImageComments": "Unaliased MB2\/PE2 ", "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", @@ -122,19 +122,19 @@ "HighBit": 15, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 37482, - "WindowCenter": 10906, - "WindowWidth": 23747, + "LargestImagePixelValue": 29679, + "WindowCenter": 9847, + "WindowWidth": 20976, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 36, "EchoColumnPosition": 36, "EchoPartitionPosition": 32, - "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", + "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", "ICE_Dims": "X_1_1_1_1_1_1_19_1_1_1_1_24", "ProtocolSliceNumber": 0, "RealDwellTime": 2700, @@ -146,33 +146,33 @@ "NumberOfImagesInMosaic": 36, "SliceNormalVector": [0,0,1], "TimeAfterStart": 5.85, - "ImaAbsTablePosition": [0,0,-1259], + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, - "SlicePosition_PCS": [-654.02409649,-660.65060234,-27.67319298], + "SlicePosition_PCS": [-643.1807227100001,-663.66265106,-41.52861404], "MultistepIndex": 0, "ImaRelTablePosition": [0,0,0], - "ImaCoilString": "HC1-6", + "ImaCoilString": "HC1-7", "RFSWDDataType": "predicted", "GSWDDataType": "predicted", "BandwidthPerPixelPhaseEncode": 28.345, - "MosaicRefAcqTimes": [0,830,512.5,192.5,1022.49999999,702.5,384.99999999,65,895,575,255,1087.49999999,767.5,447.49999999,127.5,959.99999999,640,319.99999999,0,830,512.5,192.5,1022.49999999,702.5,384.99999999,65,895,575,255,1087.49999999,767.5,447.49999999,127.5,959.99999999,640,319.99999999], + "MosaicRefAcqTimes": [0,830,510.00000001,190,1020,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,445.00000001,127.5,957.5,637.5,317.5,0,830,510.00000001,190,1020,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,445.00000001,127.5,957.5,637.5,317.5], "ImageHistory": [ "ChannelMixing:ND=true_CMM=1_CDM=1", "CC:SoS" ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,102.05397393,102.05397393], + "Sed": [1000000,103.76531256,103.76531256], "SequenceFileOwner": "USER", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -188,7 +188,7 @@ "CoilForGradient": "void", "CoilForGradient2": "AS82", "CoilId": [255,0,4877,0,0,4875,4876,4865,4866,0,0], - "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,17848,0,0,0,0,0,0], + "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,21093,0,0,0,0,0,0], "MrProtocolVersion": 51130001, "PositivePCSDirections": "+LPH", "RelTablePosition": [0,0,0], @@ -196,8 +196,8 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 1, "SliceResolution": 1, - "AbsTablePosition": -1259, - "CoilString": "HC1-6", + "AbsTablePosition": -1268, + "CoilString": "HC1-7", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, "Isocentered": 0, @@ -206,12 +206,12 @@ "tSequenceFileName": "%CustomerSeq%\\cmrr_mbep2d_bold", "tProtocolName": "cmrr_mbep2d_bold_mb2_rest", "tdefaultEVAProt": "%SiemensEvaDefProt%\\BOLD\\t-test_10B10A_moco.evp", - "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", - "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", - "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", + "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", + "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", + "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 1, "ucEnableNoiseAdjust": 1, @@ -239,7 +239,7 @@ "ucCoilCombineMode": 1, "ucFlipAngleMode": 1, "lTOM": 1, - "lProtID": -29, + "lProtID": -33, "lSequenceID": 24, "ucReadOutMode": 1, "ucBold3dPace": 1, @@ -272,64 +272,64 @@ "bEddyCompensationValid": 1, "bB0CompensationValid": 1, "bCrossTermCompensationValid": 1, - "lOffsetX": 2892, - "lOffsetY": -4178, - "lOffsetZ": 1682, + "lOffsetX": 2919, + "lOffsetY": -4319, + "lOffsetZ": 1708, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, - "alShimCurrent": [537,-3,134,-260,31] + "alShimCurrent": [548,17,-139,-131,3] }, "sRXSPEC": { "lGain": 1, @@ -354,9 +354,9 @@ "dPhaseFOV": 216, "dReadoutFOV": 216, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -540,8 +540,8 @@ "lDecouplingType": 1, "lNOEType": 1, "lExcitationType": 1, - "lFinalMatrixSizePhase": 20180918, - "lFinalMatrixSizeRead": 105731, + "lFinalMatrixSizePhase": 20180911, + "lFinalMatrixSizeRead": 110342, "lFinalMatrixSizeSlice": 36, "lSpecAppl": 1, "lSpectralSuppression": 1 @@ -601,9 +601,9 @@ "Laterality": 0, "SliceInformation": { "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -629,7 +629,7 @@ ] }, "sWipMemBlock": { - "tFree": "9fdd9861-9220-4431-ac82-4ec8f21db6dd||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", + "tFree": "7f32de99-c7b3-43ce-ba8c-c83c0f23ef81||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", "alFree": [8,0,6400,5120,0,0,0,1,0,3,11,0,0,2,1,0,1,1,1,1,10,40000,100000,1,0,2,1,1,0,100,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,1,1], "adFree": [1,12,3,12] }, @@ -709,12 +709,12 @@ "FlowCompensation": "No", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.33980531,0], - "TablePositionOrigin": [0,0,-1259], - "FmriExternalInfo": "9fdd9861-9220-4431-ac82-4ec8f21db6dd||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", - "B1rms": [100,0.96960963], + "SARMostCriticalAspect": [3.2,0.34853125,0], + "TablePositionOrigin": [0,0,-1268], + "FmriExternalInfo": "7f32de99-c7b3-43ce-ba8c-c83c0f23ef81||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", + "B1rms": [100,0.96785087], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "NONE", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -725,9 +725,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -736,14 +736,14 @@ "Private_0051_100b": "72*72 ", "Private_0051_100c": "FoV 1296*1296 ", "Private_0051_100e": "Tra ", - "Private_0051_100f": "HC1-6 ", + "Private_0051_100f": "HC1-7 ", "Private_0051_1012": "TP 0", "Private_0051_1013": "+LPH", "Private_0051_1016": "M\/MB\/ND\/MOSAIC", "Private_0051_1017": "SL 3.0", "Private_0051_1018": "EXT ", "Private_0051_1019": "A1\/FS ", - "StartOfPixelData": 160188, + "StartOfPixelData": 168348, "SizeOfPixelData": 373248, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/f1558-0008-00001-000001-01.nii b/example1/source/002/s01558/nii/f1558-0008-00001-000001-01.nii index dd17dc7..df66366 100644 --- a/example1/source/002/s01558/nii/f1558-0008-00001-000001-01.nii +++ b/example1/source/002/s01558/nii/f1558-0008-00001-000001-01.nii @@ -1 +1 @@ -f1558-0008-00001-000001-01.nii \ No newline at end of file +f1512-0008-00001-000001-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/f1558-0008-00002-000002-01.json b/example1/source/002/s01558/nii/f1558-0008-00002-000002-01.json index 233f9f4..881492d 100644 --- a/example1/source/002/s01558/nii/f1558-0008-00002-000002-01.json +++ b/example1/source/002/s01558/nii/f1558-0008-00002-000002-01.json @@ -19,24 +19,24 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810573978050495679", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111035118094294451", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\M\\MB\\ND\\MOSAIC ", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 39488.823, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 39867.75, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810573978050495679", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 39488.816, - "AcquisitionTime": 39458.5775, - "ContentTime": 39488.823, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111035118094294451", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 39867.743, + "AcquisitionTime": 39829.605, + "ContentTime": 39867.75, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", @@ -46,9 +46,9 @@ "SeriesDescription": "cmrr_mbep2d_bold_mb2_rest ", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -62,11 +62,11 @@ "RepetitionTime": 1170, "EchoTime": 30, "NumberOfAverages": 1, - "ImagingFrequency": 123.25443, + "ImagingFrequency": 123.25436, "ImagedNucleus": "1H", "EchoNumbers": 1, "MagneticFieldStrength": 3, - "SpacingBetweenSlices": 3.7499999455043, + "SpacingBetweenSlices": 3.7499998910086, "NumberOfPhaseEncodingSteps": 72, "EchoTrainLength": 72, "PercentSampling": 100, @@ -75,7 +75,7 @@ "DeviceSerialNumber": "66021 ", "SoftwareVersions": "syngo MR E11", "ProtocolName": "cmrr_mbep2d_bold_mb2_rest ", - "TriggerTime": 7122.5, + "TriggerTime": 7125, "NominalInterval": 0, "CardiacNumberOfImages": 1, "TransmitCoilName": "Body", @@ -83,7 +83,7 @@ "InPlanePhaseEncodingDirection": "COL ", "FlipAngle": 90, "VariableFlipAngleFlag": "N ", - "SAR": 0.06890179251512001, + "SAR": 0.07067113944829, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", @@ -92,25 +92,25 @@ "Private_0019_100a": 36, "Private_0019_100b": 427000, "Private_0019_1011": "No", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], - "Private_0019_1015": [-654.02409649,-660.65060234,-27.67319298], + "Private_0019_1015": [-643.1807227100001,-663.66265106,-41.52861404], "Private_0019_1016": 7.02, "Private_0019_1017": 1, "Private_0019_1018": 2700, "Private_0019_1028": 28.345, - "Private_0019_1029": [0,830,512.5,192.5,1022.50000001,702.5,384.99999999,65,895,575,255,1087.49999999,767.5,447.49999999,127.5,960.00000001,640,320.00000001,0,830,512.5,192.5,1022.50000001,702.5,384.99999999,65,895,575,255,1087.49999999,767.5,447.49999999,127.5,960.00000001,640,320.00000001], - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810573141248895386.0.0.0", + "Private_0019_1029": [0,830,510.00000001,190,1020,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,445.00000001,127.5,957.5,637.5,317.5,0,830,510.00000001,190,1020,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,445.00000001,127.5,957.5,637.5,317.5], + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111034279259294158.0.0.0", "StudyID": "1 ", "SeriesNumber": 8, "AcquisitionNumber": 2, "InstanceNumber": 2, - "ImagePositionPatient": [-654.02409648895,-660.6506023406999,-27.673192977905], + "ImagePositionPatient": [-643.18072271347,-663.66265106201,-41.528614044189], "ImageOrientationPatient": [1,0,0,0,1,0], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", - "SliceLocation": -27.673192977905, + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", + "SliceLocation": -41.528614044189, "ImageComments": "Unaliased MB2\/PE2 ", "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", @@ -122,19 +122,19 @@ "HighBit": 15, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 37352, - "WindowCenter": 10910, - "WindowWidth": 23756, + "LargestImagePixelValue": 30663, + "WindowCenter": 9855, + "WindowWidth": 20987, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 36, "EchoColumnPosition": 36, "EchoPartitionPosition": 32, - "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", + "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", "ICE_Dims": "X_1_1_1_2_1_1_19_1_1_1_1_24", "ProtocolSliceNumber": 0, "RealDwellTime": 2700, @@ -146,33 +146,33 @@ "NumberOfImagesInMosaic": 36, "SliceNormalVector": [0,0,1], "TimeAfterStart": 7.02, - "ImaAbsTablePosition": [0,0,-1259], + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, - "SlicePosition_PCS": [-654.02409649,-660.65060234,-27.67319298], + "SlicePosition_PCS": [-643.1807227100001,-663.66265106,-41.52861404], "MultistepIndex": 0, "ImaRelTablePosition": [0,0,0], - "ImaCoilString": "HC1-6", + "ImaCoilString": "HC1-7", "RFSWDDataType": "predicted", "GSWDDataType": "predicted", "BandwidthPerPixelPhaseEncode": 28.345, - "MosaicRefAcqTimes": [0,830,512.5,192.5,1022.50000001,702.5,384.99999999,65,895,575,255,1087.49999999,767.5,447.49999999,127.5,960.00000001,640,320.00000001,0,830,512.5,192.5,1022.50000001,702.5,384.99999999,65,895,575,255,1087.49999999,767.5,447.49999999,127.5,960.00000001,640,320.00000001], + "MosaicRefAcqTimes": [0,830,510.00000001,190,1020,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,445.00000001,127.5,957.5,637.5,317.5,0,830,510.00000001,190,1020,702.5,382.50000001,62.5,892.5,575,255,1085.00000001,765,445.00000001,127.5,957.5,637.5,317.5], "ImageHistory": [ "ChannelMixing:ND=true_CMM=1_CDM=1", "CC:SoS" ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,102.05397393,102.05397393], + "Sed": [1000000,103.76531256,103.76531256], "SequenceFileOwner": "USER", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -188,7 +188,7 @@ "CoilForGradient": "void", "CoilForGradient2": "AS82", "CoilId": [255,0,4877,0,0,4875,4876,4865,4866,0,0], - "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,17848,0,0,0,0,0,0], + "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,21093,0,0,0,0,0,0], "MrProtocolVersion": 51130001, "PositivePCSDirections": "+LPH", "RelTablePosition": [0,0,0], @@ -196,8 +196,8 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 1, "SliceResolution": 1, - "AbsTablePosition": -1259, - "CoilString": "HC1-6", + "AbsTablePosition": -1268, + "CoilString": "HC1-7", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, "Isocentered": 0, @@ -206,12 +206,12 @@ "tSequenceFileName": "%CustomerSeq%\\cmrr_mbep2d_bold", "tProtocolName": "cmrr_mbep2d_bold_mb2_rest", "tdefaultEVAProt": "%SiemensEvaDefProt%\\BOLD\\t-test_10B10A_moco.evp", - "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", - "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", - "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", + "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", + "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", + "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 1, "ucEnableNoiseAdjust": 1, @@ -239,7 +239,7 @@ "ucCoilCombineMode": 1, "ucFlipAngleMode": 1, "lTOM": 1, - "lProtID": -29, + "lProtID": -33, "lSequenceID": 24, "ucReadOutMode": 1, "ucBold3dPace": 1, @@ -272,64 +272,64 @@ "bEddyCompensationValid": 1, "bB0CompensationValid": 1, "bCrossTermCompensationValid": 1, - "lOffsetX": 2892, - "lOffsetY": -4178, - "lOffsetZ": 1682, + "lOffsetX": 2919, + "lOffsetY": -4319, + "lOffsetZ": 1708, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, - "alShimCurrent": [537,-3,134,-260,31] + "alShimCurrent": [548,17,-139,-131,3] }, "sRXSPEC": { "lGain": 1, @@ -354,9 +354,9 @@ "dPhaseFOV": 216, "dReadoutFOV": 216, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -540,8 +540,8 @@ "lDecouplingType": 1, "lNOEType": 1, "lExcitationType": 1, - "lFinalMatrixSizePhase": 20180918, - "lFinalMatrixSizeRead": 105731, + "lFinalMatrixSizePhase": 20180911, + "lFinalMatrixSizeRead": 110342, "lFinalMatrixSizeSlice": 36, "lSpecAppl": 1, "lSpectralSuppression": 1 @@ -601,9 +601,9 @@ "Laterality": 0, "SliceInformation": { "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -629,7 +629,7 @@ ] }, "sWipMemBlock": { - "tFree": "9fdd9861-9220-4431-ac82-4ec8f21db6dd||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", + "tFree": "7f32de99-c7b3-43ce-ba8c-c83c0f23ef81||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", "alFree": [8,0,6400,5120,0,0,0,1,0,3,11,0,0,2,1,0,1,1,1,1,10,40000,100000,1,0,2,1,1,0,100,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,1,1], "adFree": [1,12,3,12] }, @@ -709,12 +709,12 @@ "FlowCompensation": "No", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.33980531,0], - "TablePositionOrigin": [0,0,-1259], - "FmriExternalInfo": "9fdd9861-9220-4431-ac82-4ec8f21db6dd||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", - "B1rms": [100,0.96960963], + "SARMostCriticalAspect": [3.2,0.34853125,0], + "TablePositionOrigin": [0,0,-1268], + "FmriExternalInfo": "7f32de99-c7b3-43ce-ba8c-c83c0f23ef81||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", + "B1rms": [100,0.96785087], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "NONE", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -725,9 +725,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -736,14 +736,14 @@ "Private_0051_100b": "72*72 ", "Private_0051_100c": "FoV 1296*1296 ", "Private_0051_100e": "Tra ", - "Private_0051_100f": "HC1-6 ", + "Private_0051_100f": "HC1-7 ", "Private_0051_1012": "TP 0", "Private_0051_1013": "+LPH", "Private_0051_1016": "M\/MB\/ND\/MOSAIC", "Private_0051_1017": "SL 3.0", "Private_0051_1018": "EXT ", "Private_0051_1019": "A1\/FS ", - "StartOfPixelData": 160188, + "StartOfPixelData": 168348, "SizeOfPixelData": 373248, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/f1558-0008-00002-000002-01.nii b/example1/source/002/s01558/nii/f1558-0008-00002-000002-01.nii index ed81fe3..1c9c1b5 100644 --- a/example1/source/002/s01558/nii/f1558-0008-00002-000002-01.nii +++ b/example1/source/002/s01558/nii/f1558-0008-00002-000002-01.nii @@ -1 +1 @@ -f1558-0008-00002-000002-01.nii \ No newline at end of file +f1512-0008-00002-000002-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/f1558-0008-00003-000003-01.json b/example1/source/002/s01558/nii/f1558-0008-00003-000003-01.json index 774dd58..5f3ced2 100644 --- a/example1/source/002/s01558/nii/f1558-0008-00003-000003-01.json +++ b/example1/source/002/s01558/nii/f1558-0008-00003-000003-01.json @@ -19,24 +19,24 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810574095361895789", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111035235068194561", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\M\\MB\\ND\\MOSAIC ", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 39488.826, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 39867.753, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810574095361895789", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 39488.816, - "AcquisitionTime": 39459.7475, - "ContentTime": 39488.826, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111035235068194561", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 39867.743, + "AcquisitionTime": 39830.775, + "ContentTime": 39867.753, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", @@ -46,9 +46,9 @@ "SeriesDescription": "cmrr_mbep2d_bold_mb2_rest ", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -62,11 +62,11 @@ "RepetitionTime": 1170, "EchoTime": 30, "NumberOfAverages": 1, - "ImagingFrequency": 123.25443, + "ImagingFrequency": 123.25436, "ImagedNucleus": "1H", "EchoNumbers": 1, "MagneticFieldStrength": 3, - "SpacingBetweenSlices": 3.7499999455043, + "SpacingBetweenSlices": 3.7499998910086, "NumberOfPhaseEncodingSteps": 72, "EchoTrainLength": 72, "PercentSampling": 100, @@ -75,7 +75,7 @@ "DeviceSerialNumber": "66021 ", "SoftwareVersions": "syngo MR E11", "ProtocolName": "cmrr_mbep2d_bold_mb2_rest ", - "TriggerTime": 8292.5, + "TriggerTime": 8295, "NominalInterval": 0, "CardiacNumberOfImages": 1, "TransmitCoilName": "Body", @@ -83,7 +83,7 @@ "InPlanePhaseEncodingDirection": "COL ", "FlipAngle": 90, "VariableFlipAngleFlag": "N ", - "SAR": 0.06890179251512001, + "SAR": 0.07067113944829, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", @@ -92,25 +92,25 @@ "Private_0019_100a": 36, "Private_0019_100b": 427000, "Private_0019_1011": "No", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], - "Private_0019_1015": [-654.02409649,-660.65060234,-27.67319298], + "Private_0019_1015": [-643.1807227100001,-663.66265106,-41.52861404], "Private_0019_1016": 8.19, "Private_0019_1017": 1, "Private_0019_1018": 2700, "Private_0019_1028": 28.345, - "Private_0019_1029": [0,830,512.5,192.5,1022.50000001,702.5,385.00000001,65,895,575,255,1087.50000001,767.5,447.50000001,127.5,960.00000001,640,320.00000001,0,830,512.5,192.5,1022.50000001,702.5,385.00000001,65,895,575,255,1087.50000001,767.5,447.50000001,127.5,960.00000001,640,320.00000001], - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810573141248895386.0.0.0", + "Private_0019_1029": [0,830,510.00000001,190,1020,702.5,382.50000001,62.5,892.5,575.00000001,255,1085.00000001,765,445.00000001,127.5,957.5,637.50000001,317.5,0,830,510.00000001,190,1020,702.5,382.50000001,62.5,892.5,575.00000001,255,1085.00000001,765,445.00000001,127.5,957.5,637.50000001,317.5], + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111034279259294158.0.0.0", "StudyID": "1 ", "SeriesNumber": 8, "AcquisitionNumber": 3, "InstanceNumber": 3, - "ImagePositionPatient": [-654.02409648895,-660.6506023406999,-27.673192977905], + "ImagePositionPatient": [-643.18072271347,-663.66265106201,-41.528614044189], "ImageOrientationPatient": [1,0,0,0,1,0], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", - "SliceLocation": -27.673192977905, + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", + "SliceLocation": -41.528614044189, "ImageComments": "Unaliased MB2\/PE2 ", "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", @@ -122,19 +122,19 @@ "HighBit": 15, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 37409, - "WindowCenter": 10910, - "WindowWidth": 23759, + "LargestImagePixelValue": 29720, + "WindowCenter": 9843, + "WindowWidth": 20964, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 36, "EchoColumnPosition": 36, "EchoPartitionPosition": 32, - "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", + "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", "ICE_Dims": "X_1_1_1_3_1_1_19_1_1_1_1_24", "ProtocolSliceNumber": 0, "RealDwellTime": 2700, @@ -146,33 +146,33 @@ "NumberOfImagesInMosaic": 36, "SliceNormalVector": [0,0,1], "TimeAfterStart": 8.19, - "ImaAbsTablePosition": [0,0,-1259], + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, - "SlicePosition_PCS": [-654.02409649,-660.65060234,-27.67319298], + "SlicePosition_PCS": [-643.1807227100001,-663.66265106,-41.52861404], "MultistepIndex": 0, "ImaRelTablePosition": [0,0,0], - "ImaCoilString": "HC1-6", + "ImaCoilString": "HC1-7", "RFSWDDataType": "predicted", "GSWDDataType": "predicted", "BandwidthPerPixelPhaseEncode": 28.345, - "MosaicRefAcqTimes": [0,830,512.5,192.5,1022.50000001,702.5,385.00000001,65,895,575,255,1087.50000001,767.5,447.50000001,127.5,960.00000001,640,320.00000001,0,830,512.5,192.5,1022.50000001,702.5,385.00000001,65,895,575,255,1087.50000001,767.5,447.50000001,127.5,960.00000001,640,320.00000001], + "MosaicRefAcqTimes": [0,830,510.00000001,190,1020,702.5,382.50000001,62.5,892.5,575.00000001,255,1085.00000001,765,445.00000001,127.5,957.5,637.50000001,317.5,0,830,510.00000001,190,1020,702.5,382.50000001,62.5,892.5,575.00000001,255,1085.00000001,765,445.00000001,127.5,957.5,637.50000001,317.5], "ImageHistory": [ "ChannelMixing:ND=true_CMM=1_CDM=1", "CC:SoS" ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,102.05397393,102.05397393], + "Sed": [1000000,103.76531256,103.76531256], "SequenceFileOwner": "USER", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -188,7 +188,7 @@ "CoilForGradient": "void", "CoilForGradient2": "AS82", "CoilId": [255,0,4877,0,0,4875,4876,4865,4866,0,0], - "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,17848,0,0,0,0,0,0], + "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,21093,0,0,0,0,0,0], "MrProtocolVersion": 51130001, "PositivePCSDirections": "+LPH", "RelTablePosition": [0,0,0], @@ -196,8 +196,8 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 1, "SliceResolution": 1, - "AbsTablePosition": -1259, - "CoilString": "HC1-6", + "AbsTablePosition": -1268, + "CoilString": "HC1-7", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, "Isocentered": 0, @@ -206,12 +206,12 @@ "tSequenceFileName": "%CustomerSeq%\\cmrr_mbep2d_bold", "tProtocolName": "cmrr_mbep2d_bold_mb2_rest", "tdefaultEVAProt": "%SiemensEvaDefProt%\\BOLD\\t-test_10B10A_moco.evp", - "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", - "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", - "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", + "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", + "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", + "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 1, "ucEnableNoiseAdjust": 1, @@ -239,7 +239,7 @@ "ucCoilCombineMode": 1, "ucFlipAngleMode": 1, "lTOM": 1, - "lProtID": -29, + "lProtID": -33, "lSequenceID": 24, "ucReadOutMode": 1, "ucBold3dPace": 1, @@ -272,64 +272,64 @@ "bEddyCompensationValid": 1, "bB0CompensationValid": 1, "bCrossTermCompensationValid": 1, - "lOffsetX": 2892, - "lOffsetY": -4178, - "lOffsetZ": 1682, + "lOffsetX": 2919, + "lOffsetY": -4319, + "lOffsetZ": 1708, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, - "alShimCurrent": [537,-3,134,-260,31] + "alShimCurrent": [548,17,-139,-131,3] }, "sRXSPEC": { "lGain": 1, @@ -354,9 +354,9 @@ "dPhaseFOV": 216, "dReadoutFOV": 216, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -540,8 +540,8 @@ "lDecouplingType": 1, "lNOEType": 1, "lExcitationType": 1, - "lFinalMatrixSizePhase": 20180918, - "lFinalMatrixSizeRead": 105731, + "lFinalMatrixSizePhase": 20180911, + "lFinalMatrixSizeRead": 110342, "lFinalMatrixSizeSlice": 36, "lSpecAppl": 1, "lSpectralSuppression": 1 @@ -601,9 +601,9 @@ "Laterality": 0, "SliceInformation": { "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -629,7 +629,7 @@ ] }, "sWipMemBlock": { - "tFree": "9fdd9861-9220-4431-ac82-4ec8f21db6dd||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", + "tFree": "7f32de99-c7b3-43ce-ba8c-c83c0f23ef81||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", "alFree": [8,0,6400,5120,0,0,0,1,0,3,11,0,0,2,1,0,1,1,1,1,10,40000,100000,1,0,2,1,1,0,100,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,1,1], "adFree": [1,12,3,12] }, @@ -709,12 +709,12 @@ "FlowCompensation": "No", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.33980531,0], - "TablePositionOrigin": [0,0,-1259], - "FmriExternalInfo": "9fdd9861-9220-4431-ac82-4ec8f21db6dd||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", - "B1rms": [100,0.96960963], + "SARMostCriticalAspect": [3.2,0.34853125,0], + "TablePositionOrigin": [0,0,-1268], + "FmriExternalInfo": "7f32de99-c7b3-43ce-ba8c-c83c0f23ef81||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", + "B1rms": [100,0.96785087], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "NONE", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -725,9 +725,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -736,14 +736,14 @@ "Private_0051_100b": "72*72 ", "Private_0051_100c": "FoV 1296*1296 ", "Private_0051_100e": "Tra ", - "Private_0051_100f": "HC1-6 ", + "Private_0051_100f": "HC1-7 ", "Private_0051_1012": "TP 0", "Private_0051_1013": "+LPH", "Private_0051_1016": "M\/MB\/ND\/MOSAIC", "Private_0051_1017": "SL 3.0", "Private_0051_1018": "EXT ", "Private_0051_1019": "A1\/FS ", - "StartOfPixelData": 160188, + "StartOfPixelData": 168348, "SizeOfPixelData": 373248, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/f1558-0008-00003-000003-01.nii b/example1/source/002/s01558/nii/f1558-0008-00003-000003-01.nii index 5238c88..7376811 100644 --- a/example1/source/002/s01558/nii/f1558-0008-00003-000003-01.nii +++ b/example1/source/002/s01558/nii/f1558-0008-00003-000003-01.nii @@ -1 +1 @@ -f1558-0008-00003-000003-01.nii \ No newline at end of file +f1512-0008-00003-000003-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/f1558-0008-00004-000004-01.json b/example1/source/002/s01558/nii/f1558-0008-00004-000004-01.json index 6057456..fb89058 100644 --- a/example1/source/002/s01558/nii/f1558-0008-00004-000004-01.json +++ b/example1/source/002/s01558/nii/f1558-0008-00004-000004-01.json @@ -19,24 +19,24 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810574219178895903", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111035351995294671", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\M\\MB\\ND\\MOSAIC ", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 39488.837, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 39867.755, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810574219178895903", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 39488.816, - "AcquisitionTime": 39460.9175, - "ContentTime": 39488.837, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111035351995294671", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 39867.743, + "AcquisitionTime": 39831.945, + "ContentTime": 39867.755, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", @@ -46,9 +46,9 @@ "SeriesDescription": "cmrr_mbep2d_bold_mb2_rest ", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -62,11 +62,11 @@ "RepetitionTime": 1170, "EchoTime": 30, "NumberOfAverages": 1, - "ImagingFrequency": 123.25443, + "ImagingFrequency": 123.25436, "ImagedNucleus": "1H", "EchoNumbers": 1, "MagneticFieldStrength": 3, - "SpacingBetweenSlices": 3.7499999455043, + "SpacingBetweenSlices": 3.7499998910086, "NumberOfPhaseEncodingSteps": 72, "EchoTrainLength": 72, "PercentSampling": 100, @@ -75,7 +75,7 @@ "DeviceSerialNumber": "66021 ", "SoftwareVersions": "syngo MR E11", "ProtocolName": "cmrr_mbep2d_bold_mb2_rest ", - "TriggerTime": 9462.5, + "TriggerTime": 9465, "NominalInterval": 0, "CardiacNumberOfImages": 1, "TransmitCoilName": "Body", @@ -83,7 +83,7 @@ "InPlanePhaseEncodingDirection": "COL ", "FlipAngle": 90, "VariableFlipAngleFlag": "N ", - "SAR": 0.06890179251512001, + "SAR": 0.07067113944829, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", @@ -92,25 +92,25 @@ "Private_0019_100a": 36, "Private_0019_100b": 427000, "Private_0019_1011": "No", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], - "Private_0019_1015": [-654.02409649,-660.65060234,-27.67319298], + "Private_0019_1015": [-643.1807227100001,-663.66265106,-41.52861404], "Private_0019_1016": 9.359999999999999, "Private_0019_1017": 1, "Private_0019_1018": 2700, "Private_0019_1028": 28.345, - "Private_0019_1029": [0,830,512.5,192.5,1022.50000001,702.5,385.00000001,65,895,575,255,1087.50000001,767.5,447.50000001,127.5,960.00000001,640,320.00000001,0,830,512.5,192.5,1022.50000001,702.5,385.00000001,65,895,575,255,1087.50000001,767.5,447.50000001,127.5,960.00000001,640,320.00000001], - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810573141248895386.0.0.0", + "Private_0019_1029": [0,829.99999999,509.99999999,189.99999999,1019.99999999,702.5,382.49999999,62.5,892.49999999,575,254.99999999,1084.99999999,765,444.99999999,127.49999999,957.49999999,637.5,317.49999999,0,829.99999999,509.99999999,189.99999999,1019.99999999,702.5,382.49999999,62.5,892.49999999,575,254.99999999,1084.99999999,765,444.99999999,127.49999999,957.49999999,637.5,317.49999999], + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111034279259294158.0.0.0", "StudyID": "1 ", "SeriesNumber": 8, "AcquisitionNumber": 4, "InstanceNumber": 4, - "ImagePositionPatient": [-654.02409648895,-660.6506023406999,-27.673192977905], + "ImagePositionPatient": [-643.18072271347,-663.66265106201,-41.528614044189], "ImageOrientationPatient": [1,0,0,0,1,0], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", - "SliceLocation": -27.673192977905, + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", + "SliceLocation": -41.528614044189, "ImageComments": "Unaliased MB2\/PE2 ", "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", @@ -122,19 +122,19 @@ "HighBit": 15, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 37215, - "WindowCenter": 10912, - "WindowWidth": 23758, + "LargestImagePixelValue": 30296, + "WindowCenter": 9847, + "WindowWidth": 20972, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 36, "EchoColumnPosition": 36, "EchoPartitionPosition": 32, - "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", + "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", "ICE_Dims": "X_1_1_1_4_1_1_19_1_1_1_1_24", "ProtocolSliceNumber": 0, "RealDwellTime": 2700, @@ -146,33 +146,33 @@ "NumberOfImagesInMosaic": 36, "SliceNormalVector": [0,0,1], "TimeAfterStart": 9.359999999999999, - "ImaAbsTablePosition": [0,0,-1259], + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, - "SlicePosition_PCS": [-654.02409649,-660.65060234,-27.67319298], + "SlicePosition_PCS": [-643.1807227100001,-663.66265106,-41.52861404], "MultistepIndex": 0, "ImaRelTablePosition": [0,0,0], - "ImaCoilString": "HC1-6", + "ImaCoilString": "HC1-7", "RFSWDDataType": "predicted", "GSWDDataType": "predicted", "BandwidthPerPixelPhaseEncode": 28.345, - "MosaicRefAcqTimes": [0,830,512.5,192.5,1022.50000001,702.5,385.00000001,65,895,575,255,1087.50000001,767.5,447.50000001,127.5,960.00000001,640,320.00000001,0,830,512.5,192.5,1022.50000001,702.5,385.00000001,65,895,575,255,1087.50000001,767.5,447.50000001,127.5,960.00000001,640,320.00000001], + "MosaicRefAcqTimes": [0,829.99999999,509.99999999,189.99999999,1019.99999999,702.5,382.49999999,62.5,892.49999999,575,254.99999999,1084.99999999,765,444.99999999,127.49999999,957.49999999,637.5,317.49999999,0,829.99999999,509.99999999,189.99999999,1019.99999999,702.5,382.49999999,62.5,892.49999999,575,254.99999999,1084.99999999,765,444.99999999,127.49999999,957.49999999,637.5,317.49999999], "ImageHistory": [ "ChannelMixing:ND=true_CMM=1_CDM=1", "CC:SoS" ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,102.05397393,102.05397393], + "Sed": [1000000,103.76531256,103.76531256], "SequenceFileOwner": "USER", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -188,7 +188,7 @@ "CoilForGradient": "void", "CoilForGradient2": "AS82", "CoilId": [255,0,4877,0,0,4875,4876,4865,4866,0,0], - "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,17848,0,0,0,0,0,0], + "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,21093,0,0,0,0,0,0], "MrProtocolVersion": 51130001, "PositivePCSDirections": "+LPH", "RelTablePosition": [0,0,0], @@ -196,8 +196,8 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 1, "SliceResolution": 1, - "AbsTablePosition": -1259, - "CoilString": "HC1-6", + "AbsTablePosition": -1268, + "CoilString": "HC1-7", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, "Isocentered": 0, @@ -206,12 +206,12 @@ "tSequenceFileName": "%CustomerSeq%\\cmrr_mbep2d_bold", "tProtocolName": "cmrr_mbep2d_bold_mb2_rest", "tdefaultEVAProt": "%SiemensEvaDefProt%\\BOLD\\t-test_10B10A_moco.evp", - "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", - "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", - "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", + "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", + "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", + "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 1, "ucEnableNoiseAdjust": 1, @@ -239,7 +239,7 @@ "ucCoilCombineMode": 1, "ucFlipAngleMode": 1, "lTOM": 1, - "lProtID": -29, + "lProtID": -33, "lSequenceID": 24, "ucReadOutMode": 1, "ucBold3dPace": 1, @@ -272,64 +272,64 @@ "bEddyCompensationValid": 1, "bB0CompensationValid": 1, "bCrossTermCompensationValid": 1, - "lOffsetX": 2892, - "lOffsetY": -4178, - "lOffsetZ": 1682, + "lOffsetX": 2919, + "lOffsetY": -4319, + "lOffsetZ": 1708, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, - "alShimCurrent": [537,-3,134,-260,31] + "alShimCurrent": [548,17,-139,-131,3] }, "sRXSPEC": { "lGain": 1, @@ -354,9 +354,9 @@ "dPhaseFOV": 216, "dReadoutFOV": 216, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -540,8 +540,8 @@ "lDecouplingType": 1, "lNOEType": 1, "lExcitationType": 1, - "lFinalMatrixSizePhase": 20180918, - "lFinalMatrixSizeRead": 105731, + "lFinalMatrixSizePhase": 20180911, + "lFinalMatrixSizeRead": 110342, "lFinalMatrixSizeSlice": 36, "lSpecAppl": 1, "lSpectralSuppression": 1 @@ -601,9 +601,9 @@ "Laterality": 0, "SliceInformation": { "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -629,7 +629,7 @@ ] }, "sWipMemBlock": { - "tFree": "9fdd9861-9220-4431-ac82-4ec8f21db6dd||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", + "tFree": "7f32de99-c7b3-43ce-ba8c-c83c0f23ef81||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", "alFree": [8,0,6400,5120,0,0,0,1,0,3,11,0,0,2,1,0,1,1,1,1,10,40000,100000,1,0,2,1,1,0,100,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,1,1], "adFree": [1,12,3,12] }, @@ -709,12 +709,12 @@ "FlowCompensation": "No", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.33980531,0], - "TablePositionOrigin": [0,0,-1259], - "FmriExternalInfo": "9fdd9861-9220-4431-ac82-4ec8f21db6dd||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", - "B1rms": [100,0.96960963], + "SARMostCriticalAspect": [3.2,0.34853125,0], + "TablePositionOrigin": [0,0,-1268], + "FmriExternalInfo": "7f32de99-c7b3-43ce-ba8c-c83c0f23ef81||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", + "B1rms": [100,0.96785087], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "NONE", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -725,9 +725,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -736,14 +736,14 @@ "Private_0051_100b": "72*72 ", "Private_0051_100c": "FoV 1296*1296 ", "Private_0051_100e": "Tra ", - "Private_0051_100f": "HC1-6 ", + "Private_0051_100f": "HC1-7 ", "Private_0051_1012": "TP 0", "Private_0051_1013": "+LPH", "Private_0051_1016": "M\/MB\/ND\/MOSAIC", "Private_0051_1017": "SL 3.0", "Private_0051_1018": "EXT ", "Private_0051_1019": "A1\/FS ", - "StartOfPixelData": 160188, + "StartOfPixelData": 168344, "SizeOfPixelData": 373248, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/f1558-0008-00004-000004-01.nii b/example1/source/002/s01558/nii/f1558-0008-00004-000004-01.nii index bfcdde4..191675c 100644 --- a/example1/source/002/s01558/nii/f1558-0008-00004-000004-01.nii +++ b/example1/source/002/s01558/nii/f1558-0008-00004-000004-01.nii @@ -1 +1 @@ -f1558-0008-00004-000004-01.nii \ No newline at end of file +f1512-0008-00004-000004-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/f1558-0008-00005-000005-01.json b/example1/source/002/s01558/nii/f1558-0008-00005-000005-01.json index ce19bc4..ccdded1 100644 --- a/example1/source/002/s01558/nii/f1558-0008-00005-000005-01.json +++ b/example1/source/002/s01558/nii/f1558-0008-00005-000005-01.json @@ -19,24 +19,24 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810574329889696009", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111035468957594781", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\M\\MB\\ND\\MOSAIC ", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 39488.839, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 39867.761, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810574329889696009", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 39488.816, - "AcquisitionTime": 39462.0875, - "ContentTime": 39488.839, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111035468957594781", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 39867.743, + "AcquisitionTime": 39833.115, + "ContentTime": 39867.761, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", @@ -46,9 +46,9 @@ "SeriesDescription": "cmrr_mbep2d_bold_mb2_rest ", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -62,11 +62,11 @@ "RepetitionTime": 1170, "EchoTime": 30, "NumberOfAverages": 1, - "ImagingFrequency": 123.25443, + "ImagingFrequency": 123.25436, "ImagedNucleus": "1H", "EchoNumbers": 1, "MagneticFieldStrength": 3, - "SpacingBetweenSlices": 3.7499999455043, + "SpacingBetweenSlices": 3.7499998910086, "NumberOfPhaseEncodingSteps": 72, "EchoTrainLength": 72, "PercentSampling": 100, @@ -75,7 +75,7 @@ "DeviceSerialNumber": "66021 ", "SoftwareVersions": "syngo MR E11", "ProtocolName": "cmrr_mbep2d_bold_mb2_rest ", - "TriggerTime": 10632.5, + "TriggerTime": 10635, "NominalInterval": 0, "CardiacNumberOfImages": 1, "TransmitCoilName": "Body", @@ -83,7 +83,7 @@ "InPlanePhaseEncodingDirection": "COL ", "FlipAngle": 90, "VariableFlipAngleFlag": "N ", - "SAR": 0.06890179251512001, + "SAR": 0.07067113944829, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", @@ -92,25 +92,25 @@ "Private_0019_100a": 36, "Private_0019_100b": 427000, "Private_0019_1011": "No", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], - "Private_0019_1015": [-654.02409649,-660.65060234,-27.67319298], + "Private_0019_1015": [-643.1807227100001,-663.66265106,-41.52861404], "Private_0019_1016": 10.53, "Private_0019_1017": 1, "Private_0019_1018": 2700, "Private_0019_1028": 28.345, - "Private_0019_1029": [0,830,512.50000001,192.5,1022.50000001,702.5,385.00000001,65,895,575.00000001,255,1087.50000001,767.5,447.50000001,127.5,960.00000001,640,320.00000001,0,830,512.50000001,192.5,1022.50000001,702.5,385.00000001,65,895,575.00000001,255,1087.50000001,767.5,447.50000001,127.5,960.00000001,640,320.00000001], - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810573141248895386.0.0.0", + "Private_0019_1029": [0,830,509.99999999,189.99999999,1019.99999999,702.5,382.49999999,62.5,892.5,575,254.99999999,1084.99999999,765,444.99999999,127.49999999,957.49999999,637.5,317.49999999,0,830,509.99999999,189.99999999,1019.99999999,702.5,382.49999999,62.5,892.5,575,254.99999999,1084.99999999,765,444.99999999,127.49999999,957.49999999,637.5,317.49999999], + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111034279259294158.0.0.0", "StudyID": "1 ", "SeriesNumber": 8, "AcquisitionNumber": 5, "InstanceNumber": 5, - "ImagePositionPatient": [-654.02409648895,-660.6506023406999,-27.673192977905], + "ImagePositionPatient": [-643.18072271347,-663.66265106201,-41.528614044189], "ImageOrientationPatient": [1,0,0,0,1,0], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", - "SliceLocation": -27.673192977905, + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", + "SliceLocation": -41.528614044189, "ImageComments": "Unaliased MB2\/PE2 ", "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", @@ -122,19 +122,19 @@ "HighBit": 15, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 37175, - "WindowCenter": 10896, - "WindowWidth": 23715, + "LargestImagePixelValue": 29855, + "WindowCenter": 9838, + "WindowWidth": 20954, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 36, "EchoColumnPosition": 36, "EchoPartitionPosition": 32, - "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", + "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", "ICE_Dims": "X_1_1_1_5_1_1_19_1_1_1_1_24", "ProtocolSliceNumber": 0, "RealDwellTime": 2700, @@ -146,33 +146,33 @@ "NumberOfImagesInMosaic": 36, "SliceNormalVector": [0,0,1], "TimeAfterStart": 10.53, - "ImaAbsTablePosition": [0,0,-1259], + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, - "SlicePosition_PCS": [-654.02409649,-660.65060234,-27.67319298], + "SlicePosition_PCS": [-643.1807227100001,-663.66265106,-41.52861404], "MultistepIndex": 0, "ImaRelTablePosition": [0,0,0], - "ImaCoilString": "HC1-6", + "ImaCoilString": "HC1-7", "RFSWDDataType": "predicted", "GSWDDataType": "predicted", "BandwidthPerPixelPhaseEncode": 28.345, - "MosaicRefAcqTimes": [0,830,512.50000001,192.5,1022.50000001,702.5,385.00000001,65,895,575.00000001,255,1087.50000001,767.5,447.50000001,127.5,960.00000001,640,320.00000001,0,830,512.50000001,192.5,1022.50000001,702.5,385.00000001,65,895,575.00000001,255,1087.50000001,767.5,447.50000001,127.5,960.00000001,640,320.00000001], + "MosaicRefAcqTimes": [0,830,509.99999999,189.99999999,1019.99999999,702.5,382.49999999,62.5,892.5,575,254.99999999,1084.99999999,765,444.99999999,127.49999999,957.49999999,637.5,317.49999999,0,830,509.99999999,189.99999999,1019.99999999,702.5,382.49999999,62.5,892.5,575,254.99999999,1084.99999999,765,444.99999999,127.49999999,957.49999999,637.5,317.49999999], "ImageHistory": [ "ChannelMixing:ND=true_CMM=1_CDM=1", "CC:SoS" ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,102.05397393,102.05397393], + "Sed": [1000000,103.76531256,103.76531256], "SequenceFileOwner": "USER", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -188,7 +188,7 @@ "CoilForGradient": "void", "CoilForGradient2": "AS82", "CoilId": [255,0,4877,0,0,4875,4876,4865,4866,0,0], - "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,17848,0,0,0,0,0,0], + "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,123454322,2,18,1,2,0,3,3,16,1156,0,0,0,0,0,768,0,0,0,0,0,21093,0,0,0,0,0,0], "MrProtocolVersion": 51130001, "PositivePCSDirections": "+LPH", "RelTablePosition": [0,0,0], @@ -196,8 +196,8 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 1, "SliceResolution": 1, - "AbsTablePosition": -1259, - "CoilString": "HC1-6", + "AbsTablePosition": -1268, + "CoilString": "HC1-7", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, "Isocentered": 0, @@ -206,12 +206,12 @@ "tSequenceFileName": "%CustomerSeq%\\cmrr_mbep2d_bold", "tProtocolName": "cmrr_mbep2d_bold_mb2_rest", "tdefaultEVAProt": "%SiemensEvaDefProt%\\BOLD\\t-test_10B10A_moco.evp", - "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", - "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", - "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", + "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", + "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", + "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 1, "ucEnableNoiseAdjust": 1, @@ -239,7 +239,7 @@ "ucCoilCombineMode": 1, "ucFlipAngleMode": 1, "lTOM": 1, - "lProtID": -29, + "lProtID": -33, "lSequenceID": 24, "ucReadOutMode": 1, "ucBold3dPace": 1, @@ -272,64 +272,64 @@ "bEddyCompensationValid": 1, "bB0CompensationValid": 1, "bCrossTermCompensationValid": 1, - "lOffsetX": 2892, - "lOffsetY": -4178, - "lOffsetZ": 1682, + "lOffsetX": 2919, + "lOffsetY": -4319, + "lOffsetZ": 1708, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, - "alShimCurrent": [537,-3,134,-260,31] + "alShimCurrent": [548,17,-139,-131,3] }, "sRXSPEC": { "lGain": 1, @@ -354,9 +354,9 @@ "dPhaseFOV": 216, "dReadoutFOV": 216, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -540,8 +540,8 @@ "lDecouplingType": 1, "lNOEType": 1, "lExcitationType": 1, - "lFinalMatrixSizePhase": 20180918, - "lFinalMatrixSizeRead": 105731, + "lFinalMatrixSizePhase": 20180911, + "lFinalMatrixSizeRead": 110342, "lFinalMatrixSizeSlice": 36, "lSpecAppl": 1, "lSpectralSuppression": 1 @@ -601,9 +601,9 @@ "Laterality": 0, "SliceInformation": { "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -629,7 +629,7 @@ ] }, "sWipMemBlock": { - "tFree": "9fdd9861-9220-4431-ac82-4ec8f21db6dd||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", + "tFree": "7f32de99-c7b3-43ce-ba8c-c83c0f23ef81||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja", "alFree": [8,0,6400,5120,0,0,0,1,0,3,11,0,0,2,1,0,1,1,1,1,10,40000,100000,1,0,2,1,1,0,100,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,1,1], "adFree": [1,12,3,12] }, @@ -709,12 +709,12 @@ "FlowCompensation": "No", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.33980531,0], - "TablePositionOrigin": [0,0,-1259], - "FmriExternalInfo": "9fdd9861-9220-4431-ac82-4ec8f21db6dd||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", - "B1rms": [100,0.96960963], + "SARMostCriticalAspect": [3.2,0.34853125,0], + "TablePositionOrigin": [0,0,-1268], + "FmriExternalInfo": "7f32de99-c7b3-43ce-ba8c-c83c0f23ef81||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:00:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", + "B1rms": [100,0.96785087], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "NONE", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -725,9 +725,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -736,14 +736,14 @@ "Private_0051_100b": "72*72 ", "Private_0051_100c": "FoV 1296*1296 ", "Private_0051_100e": "Tra ", - "Private_0051_100f": "HC1-6 ", + "Private_0051_100f": "HC1-7 ", "Private_0051_1012": "TP 0", "Private_0051_1013": "+LPH", "Private_0051_1016": "M\/MB\/ND\/MOSAIC", "Private_0051_1017": "SL 3.0", "Private_0051_1018": "EXT ", "Private_0051_1019": "A1\/FS ", - "StartOfPixelData": 160192, + "StartOfPixelData": 168352, "SizeOfPixelData": 373248, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/f1558-0008-00005-000005-01.nii b/example1/source/002/s01558/nii/f1558-0008-00005-000005-01.nii index 3fa43af..e0b19cd 100644 --- a/example1/source/002/s01558/nii/f1558-0008-00005-000005-01.nii +++ b/example1/source/002/s01558/nii/f1558-0008-00005-000005-01.nii @@ -1 +1 @@ -f1558-0008-00005-000005-01.nii \ No newline at end of file +f1512-0008-00005-000005-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/f1558-0013-00001-000001-01.json b/example1/source/002/s01558/nii/f1558-0013-00001-000001-01.json deleted file mode 100644 index c169f3b..0000000 --- a/example1/source/002/s01558/nii/f1558-0013-00001-000001-01.json +++ /dev/null @@ -1,761 +0,0 @@ -{ - "history": { - "procstep": { - "descrip": "dicom to nifti import", - "version": "spm_dicom_convert.m - version 6899 - SPM12 (12.3)", - "procpar": [] - }, - "input": { - "filename": "AnonymousFileName", - "history": [] - }, - "output": { - "imtype": "ORIGINAL\\PRIMARY\\DIFFUSION\\NONE\\MB\\ND\\MOSAIC", - "units": "a.u." - } - }, - "acqpar": [ - { - "FileMetaInformationGroupLength": 178, - "FileMetaInformationVersion": [0,1], - "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091811090361546137088", - "TransferSyntaxUID": "1.2.840.10008.1.2.1", - "ImplementationClassUID": "1.3.12.2.1107.5.2", - "ImplementationVersionName": "MR_VE11C", - "SpecificCharacterSet": "ISO_IR 100", - "ImageType": "ORIGINAL\\PRIMARY\\DIFFUSION\\NONE\\MB\\ND\\MOSAIC", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 40228.89, - "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091811090361546137088", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 40228.886, - "AcquisitionTime": 40137.855, - "ContentTime": 40228.89, - "Modality": "MR", - "Manufacturer": "SIEMENS ", - "InstitutionName": "CRC ", - "InstitutionAddress": "Allee du 6 Aout 8,Liege,Brussels,BE,4000", - "StationName": "AWP66021", - "StudyDescription": "protocols^studies ", - "SeriesDescription": "cmrr_mbep2d_diff_NODDI", - "InstitutionalDepartmentName": "Department", - "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, - "PatientSize": 1.74, - "PatientWeight": 77, - "BodyPartExamined": "HEADNECK", - "ScanningSequence": "EP", - "SequenceVariant": "SK\\SS\\OSP ", - "ScanOptions": "PFP\\FS", - "MRAcquisitionType": "2D", - "SequenceName": "ep_b5#1 ", - "AngioFlag": "N ", - "SliceThickness": 2, - "RepetitionTime": 4070, - "EchoTime": 70.2, - "NumberOfAverages": 1, - "ImagingFrequency": 123.254434, - "ImagedNucleus": "1H", - "EchoNumbers": 1, - "MagneticFieldStrength": 3, - "SpacingBetweenSlices": 2, - "NumberOfPhaseEncodingSteps": 81, - "EchoTrainLength": 81, - "PercentSampling": 100, - "PercentPhaseFieldOfView": 100, - "PixelBandwidth": 2085, - "DeviceSerialNumber": "66021 ", - "SoftwareVersions": "syngo MR E11", - "ProtocolName": "cmrr_mbep2d_diff_NODDI", - "TransmitCoilName": "Body", - "AcquisitionMatrix": [96,0,0,96], - "InPlanePhaseEncodingDirection": "COL ", - "FlipAngle": 90, - "VariableFlipAngleFlag": "N ", - "SAR": 0.089773299142, - "dBdt": 0, - "PatientPosition": "HFS ", - "Private_0019_0010": "SIEMENS MR HEADER ", - "Private_0019_1008": "IMAGE NUM 4 ", - "Private_0019_1009": "1.0 ", - "Private_0019_100a": 70, - "Private_0019_100b": 492000, - "Private_0019_100c": 5, - "Private_0019_100d": "DIRECTIONAL ", - "Private_0019_100e": [-0.50000006,0.5,0.70710689], - "Private_0019_1011": "No", - "Private_0019_1012": [0,0,-1259], - 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"079dca53-60cb-489e-978c-ee35b16f1fff||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:11:25 by eja", - "alFree": [4096,0,6400,10240,0,0,0,1,0,3,11,0,0,2,1,0,1,1,1,1,10,40000,100000,1,0,2,1,1,0,100,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,1,1], - "adFree": [1,12,3,12] - }, - "sParametricMapping": { - "ucParametricMap": 1 - }, - "sAsl": { - "ulMode": 1 - }, - "sWorkflow": { - "eConflictSolverStrategy": 1, - "ucDotVoiceSettingsOverride": 1, - "ucDotPauseSettingsOverride": 1 - }, - "sDynDistCorrFilter": { - "ucMode": 1 - }, - "sChannelMatrix": { - "ucChannelMixingMode": 1, - "ucChannelDiscardMode": 1 - }, - "sPTXData": { - "uiPTXTargetMagMode": 1, - "sPTXMPRSliceArray": { - "sTSat": { - "ulShape": 1 - } - }, - "sPTXMPRGroupArray": { - "sPSat": { - "ulShape": 1 - } - } - }, - "sInlineCardioEval": { - "lInlineEvaMode": 1, - "lNoOfPreps": 1, - "alRecoveryDuration": 1, - "alSamplingDuration": 1 - }, - "sInteractive": { - "ucTracking": 0, - "ucSliceFollowing": 1, - "ucSliceFollowingMode": 1, - "lTrackingBackgroundSuppr": 5, - "lTrackingSensitivity": 1, - "lTrackingFlipAngle": 10, - "ucPause": 0, - "ucMosaic": 0, - "ucSkipPhysioTrigger": 0 - }, - "sDixonData": { - "ucDixon": 0, - "ucDixonEvaluation": 0, - "ucFastDixon": 0, - "sMrDixonOptions": { - "ucDixonFat": 0, - "ucDixonWater": 0, - "ucDixonInPhase": 0, - "ucDixonOpposedPhase": 0, - "ucDixonOriginalEchoes": 1 - }, - "sMrDixonEvaluationOptions": { - "ucDixonEvaWaterFraction": 0, - "ucDixonEvaFatFraction": 0, - "ucDixonEvaT2Star": 0, - "ucDixonEvaR2Star": 0, - "ucDixonEvaReport": 0 - } - }, - "sSliceAcceleration": { - "lMultiBandFactor": 1 - } - }, - "GradientMode": "", - "FlowCompensation": "No", - "RFSWDOperationMode": 0, - "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.44273802,0], - "TablePositionOrigin": [0,0,-1259], - "FmriExternalInfo": "079dca53-60cb-489e-978c-ee35b16f1fff||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:11:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", - "B1rms": [100,1.10676458], - "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, - "PhaseSliceOversampling": "2D", - "SafetyStandard": "IEC", - "DICOMImageFlavor": "", - "DICOMAcquisitionContrast": "", - "EchoTrainLength": 81, - "RFEchoTrainLength": 1, - "GradientEchoTrainLength": 81, - "Laterality4MF": "U" - }, - "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", - "PerformedProcedureStepDescription": "protocols^studies ", - "Private_0051_0010": "SIEMENS MR HEADER ", - "Private_0051_1008": "IMAGE NUM 4 ", - "Private_0051_1009": "1.0 ", - "Private_0051_100a": "TA 08:12", - "Private_0051_100b": "96p*96", - "Private_0051_100c": "FoV 1728*1728 ", - "Private_0051_100e": "Tra ", - "Private_0051_100f": "HC1-6 ", - "Private_0051_1012": "TP 0", - "Private_0051_1013": "+LPH", - "Private_0051_1016": "DIFFUSION\/NONE\/MB\/ND", - "Private_0051_1017": "SL 2.0", - "Private_0051_1019": "A1\/PFP\/FS ", - "StartOfPixelData": 204070, - "SizeOfPixelData": 1492992, - "VROfPixelData": "OW" - } - ] -} \ No newline at end of file diff --git a/example1/source/002/s01558/nii/f1558-0013-00005-000005-01.nii b/example1/source/002/s01558/nii/f1558-0013-00005-000005-01.nii deleted file mode 100644 index b3a06eb..0000000 --- a/example1/source/002/s01558/nii/f1558-0013-00005-000005-01.nii +++ /dev/null @@ -1 +0,0 @@ -f1558-0013-00005-000005-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/s1558-0001-00001-000001-01.json b/example1/source/002/s01558/nii/s1558-0001-00001-000001-01.json index 0c31274..e41a459 100644 --- a/example1/source/002/s01558/nii/s1558-0001-00001-000001-01.json +++ b/example1/source/002/s01558/nii/s1558-0001-00001-000001-01.json @@ -19,24 +19,24 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\M\\ND\\NORM", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 37474.433, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 37892.527, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 37474.42, - "AcquisitionTime": 37469.67, - "ContentTime": 37474.433, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 37892.513, + "AcquisitionTime": 37887.655, + "ContentTime": 37892.527, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", @@ -46,9 +46,9 @@ "SeriesDescription": "localizer ", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -61,7 +61,7 @@ "RepetitionTime": 8.6, "EchoTime": 4, "NumberOfAverages": 2, - "ImagingFrequency": 123.254507, + "ImagingFrequency": 123.254408, "ImagedNucleus": "1H", "EchoNumbers": 1, "MagneticFieldStrength": 3, @@ -79,7 +79,7 @@ "InPlanePhaseEncodingDirection": "ROW ", "FlipAngle": 20, "VariableFlipAngleFlag": "N ", - "SAR": 0.01339768152259, + "SAR": 0.0137417235177, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", @@ -88,22 +88,22 @@ "Private_0019_100b": 4000, "Private_0019_100f": "Normal", "Private_0019_1011": "No", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], "Private_0019_1015": [0,-145,125], "Private_0019_1016": 0, "Private_0019_1017": 1, "Private_0019_1018": 6100, - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810242787251200019.0.0.0", + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110312599741900019.0.0.0", "StudyID": "1 ", "SeriesNumber": 1, "AcquisitionNumber": 1, "InstanceNumber": 1, "ImagePositionPatient": [0,-145,125], "ImageOrientationPatient": [0,1,0,0,0,-1], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", "SliceLocation": 0, "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", @@ -115,14 +115,14 @@ "HighBit": 11, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 192, - "WindowCenter": 98, + "LargestImagePixelValue": 311, + "WindowCenter": 99, "WindowWidth": 251, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 116, "EchoColumnPosition": 128, @@ -137,7 +137,7 @@ "MeasuredFourierLines": 0, "PhaseEncodingDirectionPositive": 1, "TimeAfterStart": 0, - "ImaAbsTablePosition": [0,0,-1259], + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, "SlicePosition_PCS": [0,-145,125], "MultistepIndex": 0, @@ -152,17 +152,17 @@ ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,0.43494288,0.43494288], + "Sed": [1000000,0.44954686,0.44954686], "SequenceFileOwner": "SIEMENS", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -186,7 +186,7 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 3, "SliceResolution": 1, - "AbsTablePosition": -1259, + "AbsTablePosition": -1268, "CoilString": "HC1-7;NC1,2", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, @@ -198,7 +198,7 @@ "tdefaultEVAProt": "%SiemensEvaDefProt%\\Breast\\Breast.evp", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 2, "lContrasts": 1, @@ -262,56 +262,56 @@ "lOffsetZ": 1390, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, "alShimCurrent": [96,7,11,-6,10] @@ -708,11 +708,11 @@ "FlowCompensation": "No", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.0660738,0], - "TablePositionOrigin": [0,0,-1259], - "B1rms": [100,0.42755943], + "SARMostCriticalAspect": [3.2,0.06777052,0], + "TablePositionOrigin": [0,0,-1268], + "B1rms": [100,0.42678387], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "2D", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -723,9 +723,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -742,7 +742,7 @@ "Private_0051_1016": "M\/ND\/NORM ", "Private_0051_1017": "SL 7.0", "Private_0051_1019": "A2", - "StartOfPixelData": 162578, + "StartOfPixelData": 162582, "SizeOfPixelData": 524288, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/s1558-0001-00001-000001-01.nii b/example1/source/002/s01558/nii/s1558-0001-00001-000001-01.nii index a6fc769..31a0314 100644 --- a/example1/source/002/s01558/nii/s1558-0001-00001-000001-01.nii +++ b/example1/source/002/s01558/nii/s1558-0001-00001-000001-01.nii @@ -1 +1 @@ -s1558-0001-00001-000001-01.nii \ No newline at end of file +s1512-0001-00001-000001-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/s1558-0001-00001-000002-01.json b/example1/source/002/s01558/nii/s1558-0001-00001-000002-01.json index c040dec..fbbec54 100644 --- a/example1/source/002/s01558/nii/s1558-0001-00001-000002-01.json +++ b/example1/source/002/s01558/nii/s1558-0001-00001-000002-01.json @@ -19,24 +19,24 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\M\\ND\\NORM", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 37482.194, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 37900.288, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 37474.42, - "AcquisitionTime": 37477.685, - "ContentTime": 37482.194, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 37892.513, + "AcquisitionTime": 37895.67, + "ContentTime": 37900.288, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", @@ -46,9 +46,9 @@ "SeriesDescription": "localizer ", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -61,7 +61,7 @@ "RepetitionTime": 8.6, "EchoTime": 4, "NumberOfAverages": 2, - "ImagingFrequency": 123.254507, + "ImagingFrequency": 123.254408, "ImagedNucleus": "1H", "EchoNumbers": 1, "MagneticFieldStrength": 3, @@ -79,7 +79,7 @@ "InPlanePhaseEncodingDirection": "ROW ", "FlipAngle": 20, "VariableFlipAngleFlag": "N ", - "SAR": 0.01339768152259, + "SAR": 0.0137417235177, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", @@ -88,22 +88,22 @@ "Private_0019_100b": 4000, "Private_0019_100f": "Normal", "Private_0019_1011": "No", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], "Private_0019_1015": [-125,-20,125], "Private_0019_1016": 8.015000000000001, "Private_0019_1017": 1, "Private_0019_1018": 6100, - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810242787251200019.0.0.0", + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110312599741900019.0.0.0", "StudyID": "1 ", "SeriesNumber": 1, "AcquisitionNumber": 1, "InstanceNumber": 2, "ImagePositionPatient": [-125,-20,125], "ImageOrientationPatient": [1,0,0,0,0,-1], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", "SliceLocation": -20, "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", @@ -115,14 +115,14 @@ "HighBit": 11, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 251, - "WindowCenter": 77, - "WindowWidth": 206, + "LargestImagePixelValue": 234, + "WindowCenter": 76, + "WindowWidth": 201, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 116, "EchoColumnPosition": 128, @@ -137,7 +137,7 @@ "MeasuredFourierLines": 0, "PhaseEncodingDirectionPositive": 1, "TimeAfterStart": 8.015000000000001, - "ImaAbsTablePosition": [0,0,-1259], + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, "SlicePosition_PCS": [-125,-20,125], "MultistepIndex": 0, @@ -152,17 +152,17 @@ ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,0.43494288,0.43494288], + "Sed": [1000000,0.44954686,0.44954686], "SequenceFileOwner": "SIEMENS", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -186,7 +186,7 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 3, "SliceResolution": 1, - "AbsTablePosition": -1259, + "AbsTablePosition": -1268, "CoilString": "HC1-7;NC1,2", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, @@ -198,7 +198,7 @@ "tdefaultEVAProt": "%SiemensEvaDefProt%\\Breast\\Breast.evp", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 2, "lContrasts": 1, @@ -262,56 +262,56 @@ "lOffsetZ": 1390, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, "alShimCurrent": [96,7,11,-6,10] @@ -708,11 +708,11 @@ "FlowCompensation": "No", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.0660738,0], - "TablePositionOrigin": [0,0,-1259], - "B1rms": [100,0.42755943], + "SARMostCriticalAspect": [3.2,0.06777052,0], + "TablePositionOrigin": [0,0,-1268], + "B1rms": [100,0.42678387], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "2D", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -723,9 +723,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -742,7 +742,7 @@ "Private_0051_1016": "M\/ND\/NORM ", "Private_0051_1017": "SL 7.0", "Private_0051_1019": "A2", - "StartOfPixelData": 162590, + "StartOfPixelData": 162594, "SizeOfPixelData": 524288, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/s1558-0001-00001-000002-01.nii b/example1/source/002/s01558/nii/s1558-0001-00001-000002-01.nii index b8bceec..2664d8c 100644 --- a/example1/source/002/s01558/nii/s1558-0001-00001-000002-01.nii +++ b/example1/source/002/s01558/nii/s1558-0001-00001-000002-01.nii @@ -1 +1 @@ -s1558-0001-00001-000002-01.nii \ No newline at end of file +s1512-0001-00001-000002-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/s1558-0001-00001-000003-01.json b/example1/source/002/s01558/nii/s1558-0001-00001-000003-01.json index 54fd954..e4d2e6b 100644 --- a/example1/source/002/s01558/nii/s1558-0001-00001-000003-01.json +++ b/example1/source/002/s01558/nii/s1558-0001-00001-000003-01.json @@ -19,24 +19,24 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\M\\ND\\NORM", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 37482.192, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 37900.284, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 37474.42, - "AcquisitionTime": 37473.6775, - "ContentTime": 37482.192, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 37892.513, + "AcquisitionTime": 37891.6625, + "ContentTime": 37900.284, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", @@ -46,9 +46,9 @@ "SeriesDescription": "localizer ", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -61,7 +61,7 @@ "RepetitionTime": 8.6, "EchoTime": 4, "NumberOfAverages": 2, - "ImagingFrequency": 123.254507, + "ImagingFrequency": 123.254408, "ImagedNucleus": "1H", "EchoNumbers": 1, "MagneticFieldStrength": 3, @@ -79,7 +79,7 @@ "InPlanePhaseEncodingDirection": "COL ", "FlipAngle": 20, "VariableFlipAngleFlag": "N ", - "SAR": 0.01339768152259, + "SAR": 0.0137417235177, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", @@ -88,22 +88,22 @@ "Private_0019_100b": 4000, "Private_0019_100f": "Normal", "Private_0019_1011": "No", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], "Private_0019_1015": [-125,-145,0], "Private_0019_1016": 4.0075, "Private_0019_1017": 1, "Private_0019_1018": 6100, - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091810242787251200019.0.0.0", + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091110312599741900019.0.0.0", "StudyID": "1 ", "SeriesNumber": 1, "AcquisitionNumber": 1, "InstanceNumber": 3, "ImagePositionPatient": [-125,-145,0], "ImageOrientationPatient": [1,0,0,0,1,0], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", "SliceLocation": 0, "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", @@ -115,14 +115,14 @@ "HighBit": 11, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 279, - "WindowCenter": 60, - "WindowWidth": 168, + "LargestImagePixelValue": 346, + "WindowCenter": 89, + "WindowWidth": 231, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 116, "EchoColumnPosition": 128, @@ -137,7 +137,7 @@ "MeasuredFourierLines": 0, "PhaseEncodingDirectionPositive": 1, "TimeAfterStart": 4.0075, - "ImaAbsTablePosition": [0,0,-1259], + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, "SlicePosition_PCS": [-125,-145,0], "MultistepIndex": 0, @@ -152,17 +152,17 @@ ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,0.43494288,0.43494288], + "Sed": [1000000,0.44954686,0.44954686], "SequenceFileOwner": "SIEMENS", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -186,7 +186,7 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 3, "SliceResolution": 1, - "AbsTablePosition": -1259, + "AbsTablePosition": -1268, "CoilString": "HC1-7;NC1,2", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, @@ -198,7 +198,7 @@ "tdefaultEVAProt": "%SiemensEvaDefProt%\\Breast\\Breast.evp", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 2, "lContrasts": 1, @@ -262,56 +262,56 @@ "lOffsetZ": 1390, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, "alShimCurrent": [96,7,11,-6,10] @@ -708,11 +708,11 @@ "FlowCompensation": "No", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.0660738,0], - "TablePositionOrigin": [0,0,-1259], - "B1rms": [100,0.42755943], + "SARMostCriticalAspect": [3.2,0.06777052,0], + "TablePositionOrigin": [0,0,-1268], + "B1rms": [100,0.42678387], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "2D", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -723,9 +723,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -742,7 +742,7 @@ "Private_0051_1016": "M\/ND\/NORM ", "Private_0051_1017": "SL 7.0", "Private_0051_1019": "A2", - "StartOfPixelData": 162584, + "StartOfPixelData": 162588, "SizeOfPixelData": 524288, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/s1558-0001-00001-000003-01.nii b/example1/source/002/s01558/nii/s1558-0001-00001-000003-01.nii index 23f4c21..3007a4d 100644 --- a/example1/source/002/s01558/nii/s1558-0001-00001-000003-01.nii +++ b/example1/source/002/s01558/nii/s1558-0001-00001-000003-01.nii @@ -1 +1 @@ -s1558-0001-00001-000003-01.nii \ No newline at end of file +s1512-0001-00001-000003-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/s1558-0010-00001-000001-01.json b/example1/source/002/s01558/nii/s1558-0010-00001-000001-01.json index 641abce..0445603 100644 --- a/example1/source/002/s01558/nii/s1558-0010-00001-000001-01.json +++ b/example1/source/002/s01558/nii/s1558-0010-00001-000001-01.json @@ -19,24 +19,24 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091811062512892035149", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111123839632233921", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\M\\ND ", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 39986.179, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 40359.43, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091811062512892035149", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 39986.102, - "AcquisitionTime": 39904.2475, - "ContentTime": 39986.179, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111123839632233921", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 40359.382, + "AcquisitionTime": 40278.245, + "ContentTime": 40359.43, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", @@ -46,9 +46,9 @@ "SeriesDescription": "gre_field_mapping ", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -61,7 +61,7 @@ "RepetitionTime": 634, "EchoTime": 10, "NumberOfAverages": 1, - "ImagingFrequency": 123.25443, + "ImagingFrequency": 123.25436, "ImagedNucleus": "1H", "EchoNumbers": 1, "MagneticFieldStrength": 3, @@ -79,7 +79,7 @@ "InPlanePhaseEncodingDirection": "ROW ", "FlipAngle": 90, "VariableFlipAngleFlag": "N ", - "SAR": 0.16261179755199, + "SAR": 0.16678753501367, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", @@ -88,23 +88,23 @@ "Private_0019_100b": 79885, "Private_0019_100f": "Fast", "Private_0019_1011": "Yes ", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], - "Private_0019_1015": [-102.02409649,-108.65060234,-35.17319107], - "Private_0019_1016": 0.3175, + "Private_0019_1015": [-91.18072271,-111.66265106,-49.02861404], + "Private_0019_1016": 0.315, "Private_0019_1017": 1, "Private_0019_1018": 30000, - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091811050194036435062.0.0.0", + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111111518802533834.0.0.0", "StudyID": "1 ", "SeriesNumber": 10, "AcquisitionNumber": 1, "InstanceNumber": 1, - "ImagePositionPatient": [-102.02409648895,-108.6506023407,-35.173191070557], + "ImagePositionPatient": [-91.18072271347,-111.66265106201,-49.028614044189], "ImageOrientationPatient": [1,0,0,0,1,0], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", - "SliceLocation": -35.173191070557, + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", + "SliceLocation": -49.028614044189, "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", "Rows": 64, @@ -115,19 +115,19 @@ "HighBit": 11, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 2691, - "WindowCenter": 830, - "WindowWidth": 1828, + "LargestImagePixelValue": 4095, + "WindowCenter": 977, + "WindowWidth": 2219, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 32, "EchoColumnPosition": 32, "EchoPartitionPosition": 16, - "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", + "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", "ICE_Dims": "X_1_1_1_1_1_1_21_1_1_1_1_25", "ProtocolSliceNumber": 0, "RealDwellTime": 30000, @@ -136,13 +136,13 @@ "AcquisitionMatrixText": "64*64s", "MeasuredFourierLines": 0, "PhaseEncodingDirectionPositive": 1, - "TimeAfterStart": 0.3175, - "ImaAbsTablePosition": [0,0,-1259], + "TimeAfterStart": 0.315, + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, - "SlicePosition_PCS": [-102.02409649,-108.65060234,-35.17319107], + "SlicePosition_PCS": [-91.18072271,-111.66265106,-49.02861404], "MultistepIndex": 0, "ImaRelTablePosition": [0,0,0], - "ImaCoilString": "HC1-6", + "ImaCoilString": "HC1-7", "RFSWDDataType": "predicted", "GSWDDataType": "predicted", "ImageHistory": [ @@ -151,17 +151,17 @@ ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,115.70035617,115.70035617], + "Sed": [1000000,117.76212302,117.76212302], "SequenceFileOwner": "SIEMENS", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -185,8 +185,8 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 1, "SliceResolution": 1, - "AbsTablePosition": -1259, - "CoilString": "HC1-6", + "AbsTablePosition": -1268, + "CoilString": "HC1-7", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, "Isocentered": 0, @@ -194,12 +194,12 @@ "ulVersion": 51130001, "tSequenceFileName": "%SiemensSeq%\\gre_field_mapping", "tProtocolName": "gre_field_mapping", - "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", - "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", - "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", + "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", + "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", + "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 1, "lContrasts": 2, @@ -225,7 +225,7 @@ "ucCoilCombineMode": 1, "ucFlipAngleMode": 1, "lTOM": 1, - "lProtID": -34, + "lProtID": -38, "lSequenceID": 25, "ucReadOutMode": 1, "ucBold3dPace": 1, @@ -257,64 +257,64 @@ "bEddyCompensationValid": 1, "bB0CompensationValid": 1, "bCrossTermCompensationValid": 1, - "lOffsetX": 2892, - "lOffsetY": -4178, - "lOffsetZ": 1682, + "lOffsetX": 2919, + "lOffsetY": -4319, + "lOffsetZ": 1708, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, - "alShimCurrent": [537,-3,134,-260,31] + "alShimCurrent": [548,17,-139,-131,3] }, "sRXSPEC": { "lGain": 1, @@ -339,9 +339,9 @@ "dPhaseFOV": 216, "dReadoutFOV": 216, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -585,9 +585,9 @@ "SliceInformation": { "dInPlaneRot": 1.57079632679, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -687,11 +687,11 @@ "FlowCompensation": "Yes", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.80195812,0], - "TablePositionOrigin": [0,0,-1259], - "B1rms": [100,1.48955892], + "SARMostCriticalAspect": [3.2,0.82255174,0], + "TablePositionOrigin": [0,0,-1268], + "B1rms": [100,1.48685697], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "NONE", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -702,9 +702,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -712,15 +712,15 @@ "Private_0051_100a": "TA 01:19", "Private_0051_100b": "64*64s", "Private_0051_100c": "FoV 192*192 ", - "Private_0051_100d": "SP F35.2", + "Private_0051_100d": "SP F49.0", "Private_0051_100e": "Tra ", - "Private_0051_100f": "HC1-6 ", + "Private_0051_100f": "HC1-7 ", "Private_0051_1012": "TP 0", "Private_0051_1013": "+LPH", "Private_0051_1016": "M\/ND", "Private_0051_1017": "SL 3.0", "Private_0051_1019": "A1", - "StartOfPixelData": 147812, + "StartOfPixelData": 155968, "SizeOfPixelData": 8192, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/s1558-0010-00001-000001-01.nii b/example1/source/002/s01558/nii/s1558-0010-00001-000001-01.nii index 136e7cb..9c2ba4f 100644 --- a/example1/source/002/s01558/nii/s1558-0010-00001-000001-01.nii +++ b/example1/source/002/s01558/nii/s1558-0010-00001-000001-01.nii @@ -1 +1 @@ -s1558-0010-00001-000001-01.nii \ No newline at end of file +s1512-0010-00001-000001-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/s1558-0010-00001-000001-02.json b/example1/source/002/s01558/nii/s1558-0010-00001-000001-02.json index f745e37..2b8d079 100644 --- a/example1/source/002/s01558/nii/s1558-0010-00001-000001-02.json +++ b/example1/source/002/s01558/nii/s1558-0010-00001-000001-02.json @@ -19,24 +19,24 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091811062576541235309", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.201809111112393273534081", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\M\\ND ", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 39986.277, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 40359.514, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091811062576541235309", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 39986.102, - "AcquisitionTime": 39904.885, - "ContentTime": 39986.277, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.201809111112393273534081", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 40359.382, + "AcquisitionTime": 40278.8825, + "ContentTime": 40359.514, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", @@ -46,9 +46,9 @@ "SeriesDescription": "gre_field_mapping ", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -61,7 +61,7 @@ "RepetitionTime": 634, "EchoTime": 12.46, "NumberOfAverages": 1, - "ImagingFrequency": 123.25443, + "ImagingFrequency": 123.25436, "ImagedNucleus": "1H", "EchoNumbers": 2, "MagneticFieldStrength": 3, @@ -79,32 +79,32 @@ "InPlanePhaseEncodingDirection": "ROW ", "FlipAngle": 90, "VariableFlipAngleFlag": "N ", - "SAR": 0.16261179755199, + "SAR": 0.16678753501367, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", "Private_0019_1008": "IMAGE NUM 4 ", "Private_0019_1009": "1.0 ", - "Private_0019_100b": 79885, + "Private_0019_100b": 79882.5, "Private_0019_100f": "Fast", "Private_0019_1011": "Yes ", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], - "Private_0019_1015": [-102.02409649,-108.65060234,-35.17319107], + "Private_0019_1015": [-91.18072271,-111.66265106,-49.02861404], "Private_0019_1016": 0.9525, "Private_0019_1017": 1, "Private_0019_1018": 30000, - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091811050194036435062.0.0.0", + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111111518802533834.0.0.0", "StudyID": "1 ", "SeriesNumber": 10, "AcquisitionNumber": 1, "InstanceNumber": 1, - "ImagePositionPatient": [-102.02409648895,-108.6506023407,-35.173191070557], + "ImagePositionPatient": [-91.18072271347,-111.66265106201,-49.028614044189], "ImageOrientationPatient": [1,0,0,0,1,0], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", - "SliceLocation": -35.173191070557, + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", + "SliceLocation": -49.028614044189, "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", "Rows": 64, @@ -115,34 +115,34 @@ "HighBit": 11, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 2151, - "WindowCenter": 727, - "WindowWidth": 1586, + "LargestImagePixelValue": 3510, + "WindowCenter": 867, + "WindowWidth": 1964, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 32, "EchoColumnPosition": 32, "EchoPartitionPosition": 16, - "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", + "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", "ICE_Dims": "X_2_1_1_1_1_1_21_1_1_1_1_25", "ProtocolSliceNumber": 0, "RealDwellTime": 30000, - "SliceMeasurementDuration": 79885, + "SliceMeasurementDuration": 79882.5, "SequenceMask": 134217728, "AcquisitionMatrixText": "64*64s", "MeasuredFourierLines": 0, "PhaseEncodingDirectionPositive": 1, "TimeAfterStart": 0.9525, - "ImaAbsTablePosition": [0,0,-1259], + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, - "SlicePosition_PCS": [-102.02409649,-108.65060234,-35.17319107], + "SlicePosition_PCS": [-91.18072271,-111.66265106,-49.02861404], "MultistepIndex": 0, "ImaRelTablePosition": [0,0,0], - "ImaCoilString": "HC1-6", + "ImaCoilString": "HC1-7", "RFSWDDataType": "predicted", "GSWDDataType": "predicted", "ImageHistory": [ @@ -151,17 +151,17 @@ ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,115.70035617,115.70035617], + "Sed": [1000000,117.76212302,117.76212302], "SequenceFileOwner": "SIEMENS", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -185,8 +185,8 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 1, "SliceResolution": 1, - "AbsTablePosition": -1259, - "CoilString": "HC1-6", + "AbsTablePosition": -1268, + "CoilString": "HC1-7", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, "Isocentered": 0, @@ -194,12 +194,12 @@ "ulVersion": 51130001, "tSequenceFileName": "%SiemensSeq%\\gre_field_mapping", "tProtocolName": "gre_field_mapping", - "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", - "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", - "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", + "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", + "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", + "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 1, "lContrasts": 2, @@ -225,7 +225,7 @@ "ucCoilCombineMode": 1, "ucFlipAngleMode": 1, "lTOM": 1, - "lProtID": -34, + "lProtID": -38, "lSequenceID": 25, "ucReadOutMode": 1, "ucBold3dPace": 1, @@ -257,64 +257,64 @@ "bEddyCompensationValid": 1, "bB0CompensationValid": 1, "bCrossTermCompensationValid": 1, - "lOffsetX": 2892, - "lOffsetY": -4178, - "lOffsetZ": 1682, + "lOffsetX": 2919, + "lOffsetY": -4319, + "lOffsetZ": 1708, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, - "alShimCurrent": [537,-3,134,-260,31] + "alShimCurrent": [548,17,-139,-131,3] }, "sRXSPEC": { "lGain": 1, @@ -339,9 +339,9 @@ "dPhaseFOV": 216, "dReadoutFOV": 216, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -585,9 +585,9 @@ "SliceInformation": { "dInPlaneRot": 1.57079632679, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -687,11 +687,11 @@ "FlowCompensation": "Yes", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.80195812,0], - "TablePositionOrigin": [0,0,-1259], - "B1rms": [100,1.48955892], + "SARMostCriticalAspect": [3.2,0.82255174,0], + "TablePositionOrigin": [0,0,-1268], + "B1rms": [100,1.48685697], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "NONE", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -702,9 +702,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -712,15 +712,15 @@ "Private_0051_100a": "TA 01:19", "Private_0051_100b": "64*64s", "Private_0051_100c": "FoV 192*192 ", - "Private_0051_100d": "SP F35.2", + "Private_0051_100d": "SP F49.0", "Private_0051_100e": "Tra ", - "Private_0051_100f": "HC1-6 ", + "Private_0051_100f": "HC1-7 ", "Private_0051_1012": "TP 0", "Private_0051_1013": "+LPH", "Private_0051_1016": "M\/ND", "Private_0051_1017": "SL 3.0", "Private_0051_1019": "A1", - "StartOfPixelData": 147816, + "StartOfPixelData": 155974, "SizeOfPixelData": 8192, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/s1558-0010-00001-000001-02.nii b/example1/source/002/s01558/nii/s1558-0010-00001-000001-02.nii index 098d068..186c545 100644 --- a/example1/source/002/s01558/nii/s1558-0010-00001-000001-02.nii +++ b/example1/source/002/s01558/nii/s1558-0010-00001-000001-02.nii @@ -1 +1 @@ -s1558-0010-00001-000001-02.nii \ No newline at end of file +s1512-0010-00001-000001-02.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/s1558-0011-00001-000001-02.json b/example1/source/002/s01558/nii/s1558-0011-00001-000001-02.json index 2352b73..8a265c9 100644 --- a/example1/source/002/s01558/nii/s1558-0011-00001-000001-02.json +++ b/example1/source/002/s01558/nii/s1558-0011-00001-000001-02.json @@ -19,24 +19,24 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091811062576503635308", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.201809111112393229934080", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", "ImageType": "ORIGINAL\\PRIMARY\\P\\ND ", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 39986.398, + "InstanceCreationDate": 737314, + "InstanceCreationTime": 40359.643, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091811062576503635308", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 39986.349, - "AcquisitionTime": 39904.885, - "ContentTime": 39986.398, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.201809111112393229934080", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 40359.596, + "AcquisitionTime": 40278.8825, + "ContentTime": 40359.643, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", @@ -46,9 +46,9 @@ "SeriesDescription": "gre_field_mapping ", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", @@ -61,7 +61,7 @@ "RepetitionTime": 634, "EchoTime": 12.46, "NumberOfAverages": 1, - "ImagingFrequency": 123.25443, + "ImagingFrequency": 123.25436, "ImagedNucleus": "1H", "EchoNumbers": 2, "MagneticFieldStrength": 3, @@ -79,32 +79,32 @@ "InPlanePhaseEncodingDirection": "ROW ", "FlipAngle": 90, "VariableFlipAngleFlag": "N ", - "SAR": 0.16261179755199, + "SAR": 0.16678753501367, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", "Private_0019_1008": "IMAGE NUM 4 ", "Private_0019_1009": "1.0 ", - "Private_0019_100b": 79885, + "Private_0019_100b": 79882.5, "Private_0019_100f": "Fast", "Private_0019_1011": "Yes ", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], - "Private_0019_1015": [-102.02409649,-108.65060234,-35.17319107], + "Private_0019_1015": [-91.18072271,-111.66265106,-49.02861404], "Private_0019_1016": 0.9525, "Private_0019_1017": 1, "Private_0019_1018": 30000, - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091811050194037735063.0.0.0", + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111111518803933835.0.0.0", "StudyID": "1 ", "SeriesNumber": 11, "AcquisitionNumber": 1, "InstanceNumber": 1, - "ImagePositionPatient": [-102.02409648895,-108.6506023407,-35.173191070557], + "ImagePositionPatient": [-91.18072271347,-111.66265106201,-49.028614044189], "ImageOrientationPatient": [1,0,0,0,1,0], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", - "SliceLocation": -35.173191070557, + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", + "SliceLocation": -49.028614044189, "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", "Rows": 64, @@ -114,10 +114,10 @@ "BitsStored": 12, "HighBit": 11, "PixelRepresentation": 0, - "SmallestImagePixelValue": 1, - "LargestImagePixelValue": 4095, - "WindowCenter": -404, - "WindowWidth": 5652, + "SmallestImagePixelValue": 0, + "LargestImagePixelValue": 4088, + "WindowCenter": -556, + "WindowWidth": 4856, "RescaleIntercept": -4096, "RescaleSlope": 2, "RescaleType": "US", @@ -125,27 +125,27 @@ "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { "EchoLinePosition": 32, "EchoColumnPosition": 32, "EchoPartitionPosition": 16, - "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", + "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", "ICE_Dims": "X_2_1_1_1_1_1_21_1_1_1_1_25", "ProtocolSliceNumber": 0, "RealDwellTime": 30000, - "SliceMeasurementDuration": 79885, + "SliceMeasurementDuration": 79882.5, "SequenceMask": 134217728, "AcquisitionMatrixText": "64*64s", "MeasuredFourierLines": 0, "PhaseEncodingDirectionPositive": 1, "TimeAfterStart": 0.9525, - "ImaAbsTablePosition": [0,0,-1259], + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, - "SlicePosition_PCS": [-102.02409649,-108.65060234,-35.17319107], + "SlicePosition_PCS": [-91.18072271,-111.66265106,-49.02861404], "MultistepIndex": 0, "ImaRelTablePosition": [0,0,0], - "ImaCoilString": "HC1-6", + "ImaCoilString": "HC1-7", "RFSWDDataType": "predicted", "GSWDDataType": "predicted", "ImageHistory": [ @@ -154,17 +154,17 @@ ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,115.70035617,115.70035617], + "Sed": [1000000,117.76212302,117.76212302], "SequenceFileOwner": "SIEMENS", "Stim_mon_mode": 2, "Operation_mode_flag": 0, @@ -188,8 +188,8 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 1, "SliceResolution": 1, - "AbsTablePosition": -1259, - "CoilString": "HC1-6", + "AbsTablePosition": -1268, + "CoilString": "HC1-7", "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, "Isocentered": 0, @@ -197,12 +197,12 @@ "ulVersion": 51130001, "tSequenceFileName": "%SiemensSeq%\\gre_field_mapping", "tProtocolName": "gre_field_mapping", - "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", - "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", - "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", + "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", + "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", + "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 1, "lContrasts": 2, @@ -228,7 +228,7 @@ "ucCoilCombineMode": 1, "ucFlipAngleMode": 1, "lTOM": 1, - "lProtID": -34, + "lProtID": -38, "lSequenceID": 25, "ucReadOutMode": 1, "ucBold3dPace": 1, @@ -260,64 +260,64 @@ "bEddyCompensationValid": 1, "bB0CompensationValid": 1, "bCrossTermCompensationValid": 1, - "lOffsetX": 2892, - "lOffsetY": -4178, - "lOffsetZ": 1682, + "lOffsetX": 2919, + "lOffsetY": -4319, + "lOffsetZ": 1708, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": [0.000397838884965,0.00396440783516,0.000892106269021,-7.50108156353e-05,0.000397765950765], - "aflTimeConstant": [2.27541971207,0.652853786945,0.137857198715,0.0498203635216,0.000500501890201] + "aflAmplitude": [0.000667567015626,0.00375032005832,0.00102376996074,-0.000236538005993,0.000126560000353], + "aflTimeConstant": [1.673609972,0.630599021912,0.123338997364,0.0500000007451,0.00107868004125] }, "sEddyCompensationY": { - "aflAmplitude": [0.000204903495614,0.00557373277843,0.00045935169328,0.00133388047107,-0.0013542228844], - "aflTimeConstant": [3.3937766552,0.811448633671,0.137799099088,0.00162166950759,0.00111897336319] + "aflAmplitude": [0.00017981500423,0.00565967988223,0.000433845998487,0.00128752994351,-0.00119251001161], + "aflTimeConstant": [3.59572005272,0.812363982201,0.132410004735,0.00155021005776,0.00116702995729] }, "sEddyCompensationZ": { - "aflAmplitude": [-0.000306768226437,-0.00158746994566,-0.000417237984948,0.000246045150561,-0.00110337894876], - "aflTimeConstant": [2.3625330925,0.491740912199,0.120485544205,0.00100116827525,0.000500946131069] + "aflAmplitude": [-0.000294744997518,-0.00150642998051,-0.000477018009406,5.25216000824e-06,-0.000462780008093], + "aflTimeConstant": [2.31667995453,0.508545994759,0.13863299787,0.0498855002224,0.000500233029015] }, "sB0CompensationX": { - "aflAmplitude": [0.0302337817848,0.000701900338754,0.00314928311855], - "aflTimeConstant": [0.624793589115,0.208623632789,0.008290381170809999] + "aflAmplitude": [0.00256288005039,0.0284432992339,0.00123365002219], + "aflTimeConstant": [1.99930000305,0.583347022533,0.0240988992155] }, "sB0CompensationY": { - "aflAmplitude": [0.0167058818042,0.156244963408,0.0252919495106], - "aflTimeConstant": [1.76970696449,0.557672142982,0.096647657454] + "aflAmplitude": [0.09313890337940001,0.0853348970413,0.0201086997986], + "aflTimeConstant": [0.839631974697,0.402260988951,0.0744690969586] }, "sB0CompensationZ": { - "aflAmplitude": [0.00715372571722,0.139097437263,0.0175559595227], - "aflTimeConstant": [1.90843379498,0.5055710673329999,0.0792242065072] + "aflAmplitude": [0.009917190298439999,0.137356996536,0.0166253000498], + "aflTimeConstant": [1.58984005451,0.495893001556,0.0771223977208] }, "sCrossTermCompensationXY": { - "aflAmplitude": 6.24550739303e-05, - "aflTimeConstant": 0.975110352039 + "aflAmplitude": 6.02457985224e-05, + "aflTimeConstant": 1.15346002579 }, "sCrossTermCompensationXZ": { - "aflAmplitude": 0.000260739587247, - "aflTimeConstant": 0.495784074068 + "aflAmplitude": 0.000253156002145, + "aflTimeConstant": 0.458763003349 }, "sCrossTermCompensationYX": { - "aflAmplitude": -0.00117072986905, - "aflTimeConstant": 0.424304902554 + "aflAmplitude": -0.00117743003648, + "aflTimeConstant": 0.425570011139 }, "sCrossTermCompensationYZ": { - "aflAmplitude": 0.000162911819643, - "aflTimeConstant": 0.542331218719 + "aflAmplitude": 0.000163436998264, + "aflTimeConstant": 0.547646999359 }, "sCrossTermCompensationZX": { - "aflAmplitude": -5.5822692957e-05, - "aflTimeConstant": 0.615398526192 + "aflAmplitude": -6.304930138870001e-05, + "aflTimeConstant": 0.582077980042 } }, - "alShimCurrent": [537,-3,134,-260,31] + "alShimCurrent": [548,17,-139,-131,3] }, "sRXSPEC": { "lGain": 1, @@ -342,9 +342,9 @@ "dPhaseFOV": 216, "dReadoutFOV": 216, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -588,9 +588,9 @@ "SliceInformation": { "dInPlaneRot": 1.57079632679, "sPosition": { - "dSag": -6.02409638554, - "dCor": -12.6506024096, - "dTra": 37.9518072289 + "dSag": 4.81927710843, + "dCor": -15.6626506024, + "dTra": 24.0963855422 }, "sNormal": { "dTra": 1 @@ -690,11 +690,11 @@ "FlowCompensation": "Yes", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.80195812,0], - "TablePositionOrigin": [0,0,-1259], - "B1rms": [100,1.48955892], + "SARMostCriticalAspect": [3.2,0.82255174,0], + "TablePositionOrigin": [0,0,-1268], + "B1rms": [100,1.48685697], "B1rmsSupervision": "NO", - "TalesReferencePower": 1040.153225, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "NONE", "SafetyStandard": "IEC", "DICOMImageFlavor": "", @@ -705,9 +705,9 @@ "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", "Private_0051_0010": "SIEMENS MR HEADER ", "Private_0051_1008": "IMAGE NUM 4 ", @@ -715,15 +715,15 @@ "Private_0051_100a": "TA 01:19", "Private_0051_100b": "64*64s", "Private_0051_100c": "FoV 192*192 ", - "Private_0051_100d": "SP F35.2", + "Private_0051_100d": "SP F49.0", "Private_0051_100e": "Tra ", - "Private_0051_100f": "HC1-6 ", + "Private_0051_100f": "HC1-7 ", "Private_0051_1012": "TP 0", "Private_0051_1013": "+LPH", "Private_0051_1016": "P\/ND", "Private_0051_1017": "SL 3.0", "Private_0051_1019": "A1", - "StartOfPixelData": 147858, + "StartOfPixelData": 156016, "SizeOfPixelData": 8192, "VROfPixelData": "OW" } diff --git a/example1/source/002/s01558/nii/s1558-0011-00001-000001-02.nii b/example1/source/002/s01558/nii/s1558-0011-00001-000001-02.nii index ed2deda..a875f08 100644 --- a/example1/source/002/s01558/nii/s1558-0011-00001-000001-02.nii +++ b/example1/source/002/s01558/nii/s1558-0011-00001-000001-02.nii @@ -1 +1 @@ -s1558-0011-00001-000001-02.nii \ No newline at end of file +s1512-0011-00001-000001-02.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/s1558-0012-00001-000001-01.nii b/example1/source/002/s01558/nii/s1558-0012-00001-000001-01.nii deleted file mode 100644 index fbc2195..0000000 --- a/example1/source/002/s01558/nii/s1558-0012-00001-000001-01.nii +++ /dev/null @@ -1 +0,0 @@ -s1558-0012-00001-000001-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/s1558-0012-00001-000001-01.json b/example1/source/002/s01558/nii/s1558-0012-00001-000224-01.json similarity index 58% rename from example1/source/002/s01558/nii/s1558-0012-00001-000001-01.json rename to example1/source/002/s01558/nii/s1558-0012-00001-000224-01.json index 2390dd4..c2b3ff2 100644 --- a/example1/source/002/s01558/nii/s1558-0012-00001-000001-01.json +++ b/example1/source/002/s01558/nii/s1558-0012-00001-000224-01.json @@ -10,7 +10,7 @@ "history": [] }, "output": { - "imtype": "ORIGINAL\\PRIMARY\\M\\MB\\ND", + "imtype": "ORIGINAL\\PRIMARY\\M\\ND ", "units": "a.u." } }, @@ -19,170 +19,166 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091811081073375435707", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111165999281334830", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", - "ImageType": "ORIGINAL\\PRIMARY\\M\\MB\\ND", - "InstanceCreationDate": 737321, - "InstanceCreationTime": 40097.366, + "ImageType": "ORIGINAL\\PRIMARY\\M\\ND ", + "InstanceCreationDate": 737314, + "InstanceCreationTime": 40620.453, "SOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091811081073375435707", - "StudyDate": 737321, - "SeriesDate": 737321, - "AcquisitionDate": 737321, - "ContentDate": 737321, - "StudyTime": 37431.107, - "SeriesTime": 40097.363, - "AcquisitionTime": 40085.3875, - "ContentTime": 40097.366, + "SOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111165999281334830", + "StudyDate": 737314, + "SeriesDate": 737314, + "AcquisitionDate": 737314, + "ContentDate": 737314, + "StudyTime": 36945.973, + "SeriesTime": 40619.865, + "AcquisitionTime": 40368.8175, + "ContentTime": 40620.453, "Modality": "MR", "Manufacturer": "SIEMENS ", "InstitutionName": "CRC ", "InstitutionAddress": "Allee du 6 Aout 8,Liege,Brussels,BE,4000", "StationName": "AWP66021", "StudyDescription": "protocols^studies ", - "SeriesDescription": "cmrr_mbep2d_diff_NODDI_invertpe ", + "SeriesDescription": "t1_mpr_sag_p2_iso ", "InstitutionalDepartmentName": "Department", "ManufacturerModelName": "Prisma", - "PatientID": " 1558", - "PatientSex": " F ", - "PatientAge": 32.0, + "PatientID": " 1512", + "PatientSex": " M ", + "PatientAge": 38.0, "PatientSize": 1.74, "PatientWeight": 77, "BodyPartExamined": "HEADNECK", - "ScanningSequence": "EP", - "SequenceVariant": "SK\\SS\\OSP ", - "ScanOptions": "PFP\\FS", - "MRAcquisitionType": "2D", - "SequenceName": "epse2d1_96", + "ScanningSequence": "GR\\IR ", + "SequenceVariant": "SK\\SP\\MP", + "ScanOptions": "IR", + "MRAcquisitionType": "3D", + "SequenceName": "*tfl3d1_16ns", "AngioFlag": "N ", - "SliceThickness": 2, - "RepetitionTime": 4070, - "EchoTime": 70.2, + "SliceThickness": 1, + "RepetitionTime": 1900, + "EchoTime": 2.19, + "InversionTime": 900, "NumberOfAverages": 1, - "ImagingFrequency": 123.254433, + "ImagingFrequency": 123.254391, "ImagedNucleus": "1H", "EchoNumbers": 1, "MagneticFieldStrength": 3, - "SpacingBetweenSlices": 2, - "NumberOfPhaseEncodingSteps": 81, - "EchoTrainLength": 81, + "NumberOfPhaseEncodingSteps": 239, + "EchoTrainLength": 1, "PercentSampling": 100, - "PercentPhaseFieldOfView": 100, - "PixelBandwidth": 2085, + "PercentPhaseFieldOfView": 93.75, + "PixelBandwidth": 250, "DeviceSerialNumber": "66021 ", "SoftwareVersions": "syngo MR E11", - "ProtocolName": "cmrr_mbep2d_diff_NODDI_invertpe ", + "ProtocolName": "t1_mpr_sag_p2_iso ", "TransmitCoilName": "Body", - "AcquisitionMatrix": [96,0,0,96], - "InPlanePhaseEncodingDirection": "COL ", - "FlipAngle": 90, + "AcquisitionMatrix": [0,256,240,0], + "InPlanePhaseEncodingDirection": "ROW ", + "FlipAngle": 9, "VariableFlipAngleFlag": "N ", - "SAR": 0.08026960050856, + "SAR": 0.06552834045635, "dBdt": 0, "PatientPosition": "HFS ", "Private_0019_0010": "SIEMENS MR HEADER ", "Private_0019_1008": "IMAGE NUM 4 ", "Private_0019_1009": "1.0 ", - "Private_0019_100b": 33000, - "Private_0019_100d": "NONE", + "Private_0019_100b": 248475, + "Private_0019_100f": "Whisper ", "Private_0019_1011": "No", - "Private_0019_1012": [0,0,-1259], - "Private_0019_1013": [0,0,-1259], + "Private_0019_1012": [0,0,-1268], + "Private_0019_1013": [0,0,-1268], "Private_0019_1014": [0,0,0], - "Private_0019_1015": [-100.81927729,-109.85542202,-35.26506042], - "Private_0019_1016": 12.21, + "Private_0019_1015": [113.90963864,-136.26506042,117.75903606], "Private_0019_1017": 1, - "Private_0019_1018": 2500, - "Private_0019_1028": 17.147, - "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091808235112000000001", - "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091811075331895035393.0.0.0", + "Private_0019_1018": 7800, + "StudyInstanceUID": "1.3.12.2.1107.5.2.43.66021.30000018091108154598500000001", + "SeriesInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111124689395334160.0.0.0", "StudyID": "1 ", "SeriesNumber": 12, "AcquisitionNumber": 1, - "InstanceNumber": 1, - "ImagePositionPatient": [-100.81927728653,-109.85542201996,-35.265060424805], - "ImageOrientationPatient": [1,0,0,0,1,0], - "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180918102351468.0.0.0", - "SliceLocation": -35.265060424805, - "ImageComments": "Unaliased MB2\/PE2\/LB", + "InstanceNumber": 224, + "ImagePositionPatient": [113.90963864326,-136.2650604248,117.75903606415], + "ImageOrientationPatient": [0,1,0,0,0,-1], + "FrameOfReferenceUID": "1.3.12.2.1107.5.2.43.66021.1.20180911102702649.0.0.0", + "SliceLocation": 113.90963864326, "SamplesPerPixel": 1, "PhotometricInterpretation": "MONOCHROME2 ", - "Rows": 96, - "Columns": 96, - "PixelSpacing": [2,2], + "Rows": 256, + "Columns": 240, + "PixelSpacing": [1,1], "BitsAllocated": 16, - "BitsStored": 16, - "HighBit": 15, + "BitsStored": 12, + "HighBit": 11, "PixelRepresentation": 0, "SmallestImagePixelValue": 0, - "LargestImagePixelValue": 15294, - "WindowCenter": 3356, - "WindowWidth": 8850, + "LargestImagePixelValue": 73, + "WindowCenter": 79, + "WindowWidth": 187, "WindowCenterWidthExplanation": "Algo1 ", "PrivateCreatorCode": "SIEMENS CSA HEADER", "AnotherPrivateCreatorCode": "SIEMENS MEDCOM HEADER2", "CSAImageHeaderType": "IMAGE NUM 4 ", - "CSAImageHeaderVersion": "20180918", + "CSAImageHeaderVersion": "20180911", "CSAImageHeaderInfo": { - "EchoLinePosition": 54, - "EchoColumnPosition": 48, - "EchoPartitionPosition": 32, - "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", - "ICE_Dims": "X_1_1_1_1_1_1_36_1_1_1_1_28", + "EchoLinePosition": 120, + "EchoColumnPosition": 128, + "EchoPartitionPosition": 112, + "UsedChannelString": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX", + "Actual3DImaPartNumber": 223, + "ICE_Dims": "X_1_1_1_1_1_224_1_1_1_1_1_27", "ProtocolSliceNumber": 0, - "RealDwellTime": 2500, - "SliceMeasurementDuration": 33000, - "SequenceMask": 0, - "AcquisitionMatrixText": "96p*96", + "RealDwellTime": 7800, + "SliceMeasurementDuration": 248475, + "SequenceMask": 134217728, + "AcquisitionMatrixText": "240*256", "MeasuredFourierLines": 0, - "PhaseEncodingDirectionPositive": 0, - "DiffusionDirectionality": "NONE", - "TimeAfterStart": 12.21, - "ImaAbsTablePosition": [0,0,-1259], + "PhaseEncodingDirectionPositive": 1, + "ImaAbsTablePosition": [0,0,-1268], "NonPlanarImage": 0, - "SlicePosition_PCS": [-100.81927729,-109.85542202,-35.26506042], + "SlicePosition_PCS": [113.90963864,-136.26506042,117.75903606], "MultistepIndex": 0, "ImaRelTablePosition": [0,0,0], - "ImaCoilString": "HC1-6", - "RFSWDDataType": "predicted", - "GSWDDataType": "predicted", - "BandwidthPerPixelPhaseEncode": 17.147, + "ImaCoilString": "HC1-7;NC1,2", + "RFSWDDataType": "measured", + "GSWDDataType": "measured", + "ImaPATModeText": "p2", "ImageHistory": [ "ChannelMixing:ND=true_CMM=1_CDM=1", "CC:SoS" ] }, "CSASeriesHeaderType": "MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 243.003221, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,118.32387706,118.32387706], - "SequenceFileOwner": "USER", + "Sed": [1000000,134.1869373,134.18693732], + "SequenceFileOwner": "SIEMENS", "Stim_mon_mode": 2, - "Operation_mode_flag": 2, + "Operation_mode_flag": 0, "dBdt_max": 0, "t_puls_max": 0, "dBdt_thresh": 0, "dBdt_limit": 0, "SW_korr_faktor": 1, - "Stim_max_online": [41.57765198,1.15220046,1.47571492], - "Stim_max_ges_norm_online": 0.97572392, + "Stim_max_online": [10.83965111,8.084196090000001,8.43910217], + "Stim_max_ges_norm_online": 0.48131922, "Stim_lim": [42.70069885,23.97319984,36.48099899], "Stim_faktor": 1, "CoilForGradient": "void", "CoilForGradient2": "AS82", "CoilId": [255,0,4877,0,0,4875,4876,4865,4866,0,0], - "MiscSequenceParam": [40,1,5,0,0,0,0,0,0,0,123454322,2,35,1,2,0,3,3,0,1668,0,0,0,0,524288,768,0,0,0,0,2,32068,0,0,0,0,0,0], + "MiscSequenceParam": [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29473,0,0,0,0,0,0], "MrProtocolVersion": 51130001, "PositivePCSDirections": "+LPH", "RelTablePosition": [0,0,0], @@ -190,49 +186,51 @@ "LongModelName": "NUMARIS\/4", "SliceArrayConcatenations": 1, "SliceResolution": 1, - "AbsTablePosition": -1259, - "CoilString": "HC1-6", - "PatReinPattern": "1;HFS;77.00;35.00;1;0;2;1319473693", + "AbsTablePosition": -1268, + "CoilString": "HC1-7;NC1,2", + "PATModeText": "p2", + "PatReinPattern": "1;HFS;77.00;35.00;1;0;0;2090070175", "ProtocolChangeHistory": 0, "Isocentered": 0, "MrPhoenixProtocol": { "ulVersion": 51130001, - "tSequenceFileName": "%CustomerSeq%\\cmrr_mbep2d_diff", - "tProtocolName": "cmrr_mbep2d_diff_NODDI_invertpe", - "tdefaultEVAProt": "%SiemensEvaDefProt%\\DTI\\DTI.evp", - "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091810243421424300025", - "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091810244214993000033", - "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091810243814762900029", + "tSequenceFileName": "%SiemensSeq%\\tfl", + "tProtocolName": "t1_mpr_sag_p2_iso", + "tdefaultEVAProt": "%SiemensEvaDefProt%\\Inline\\Inline.evp", + "tReferenceImage0": "1.3.12.2.1107.5.2.43.66021.2018091110314023482700033", + "tReferenceImage1": "1.3.12.2.1107.5.2.43.66021.2018091110313621790100029", + "tReferenceImage2": "1.3.12.2.1107.5.2.43.66021.2018091110313230667600025", "lScanRegionPosTra": 0, "ucScanRegionPosValid": 1, - "lPtabAbsStartPosZ": -1259, + "lPtabAbsStartPosZ": -1268, "bPtabAbsStartPosZValid": 1, "ucTablePositioningMode": 2, "ucEnableNoiseAdjust": 1, "lContrasts": 1, "lCombinedEchoes": 1, + "ucEnableIntro": 1, "ucDisableChangeStoreImages": 1, "ucAAMode": 1, "ucAARegionMode": 1, "ucAARefMode": 1, "ucReconstructionMode": 1, - "ucOneSeriesForAllMeas": 1, + "ucOneSeriesForAllMeas": 4, "ucPHAPSMode": 1, "ulWrapUpMagn": 1, "lAverages": 1, "dAveragesDouble": 1, - "lScanTimeSec": 33, - "lTotalScanTimeSec": 33, - "dRefSNR": 35272.6522961, - "dRefSNR_VOI": 31353.4687076, + "lScanTimeSec": 249, + "lTotalScanTimeSec": 250, + "dRefSNR": 231676.464061, + "dRefSNR_VOI": 231676.464061, "ucMotionCorr": 1, "ucCineMode": 1, - "ucSequenceType": 4, + "ucSequenceType": 1, "ucCoilCombineMode": 1, "ucFlipAngleMode": 1, "lTOM": 1, - "lProtID": -44, - "lSequenceID": 28, + "lProtID": -46, + "lSequenceID": 27, "ucReadOutMode": 1, "ucBold3dPace": 1, "ucForcePositioningOnNDIS": 1, @@ -256,77 +254,76 @@ "ulConvFromVersion": 51130001 }, "sGRADSPEC": { - "ucMode": 8, + "ucMode": 4, "bShimCurrentValid": 1, "ucNoiseReduction": 1, "asGPAData": { "bEddyCompensationValid": 1, "bB0CompensationValid": 1, "bCrossTermCompensationValid": 1, - "lOffsetX": 2894, - "lOffsetY": -4188, - "lOffsetZ": 1676, + "lOffsetX": 2906, + "lOffsetY": -4329, + "lOffsetZ": 1575, "bOffsetValid": 1, "lDelayX": 35, - "lDelayY": 35, + "lDelayY": 36, "lDelayZ": 31, "bDelayValid": 1, - "flSensitivityX": 0.000159358634846, - "flSensitivityY": 0.000160440860782, - "flSensitivityZ": 0.000163117612829, + "flSensitivityX": 0.000159500996233, + "flSensitivityY": 0.000160342999152, + "flSensitivityZ": 0.000163342003361, "bSensitivityValid": 1, "sEddyCompensationX": { - "aflAmplitude": 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1, + "dDistFact": 0.5 }, - "anMember": [0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,-1], + "anMember": [0,-1], "sPSat": { "dThickness": 50, - "dGap": 10, "ulShape": 1 } }, @@ -424,13 +418,13 @@ "ucMotionCorr": 2 }, "sPrepPulses": { - "ucFatSat": 1, + "ucFatSat": 4, "ucWaterSat": 4, - "ucInversion": 4, + "ucInversion": 2, "ucSatRecovery": 1, "ucT2Prep": 1, "ucTIScout": 1, - "ucFatSatMode": 1, + "ucFatSatMode": 2, "dDarkBloodThickness": 200, "dDarkBloodFlipAngle": 200, "dIRPulseThicknessFactor": 0.77, @@ -442,35 +436,36 @@ }, "sKSpace": { "dPhaseResolution": 1, - "dPhaseOversamplingForDialog": 0.12, "dSliceResolution": 1, "dAngioDynCentralRegionA": 20, "dAngioDynSamplingDensityB": 25, "dSeqPhasePartialFourierForSNR": 1, - "lBaseResolution": 96, - "lPhaseEncodingLines": 108, - "lPartitions": 64, - "lImagesPerSlab": 64, + "lBaseResolution": 256, + "lPhaseEncodingLines": 240, + "lPartitions": 224, + "lImagesPerSlab": 224, "lRadialViews": 64, "lRadialInterleavesPerImage": 2, "lLinesPerShot": 1, "unReordering": 1, - "ucPhasePartialFourier": 4, + "ucPhasePartialFourier": 16, "ucSlicePartialFourier": 16, "ucAveragingMode": 2, - "ucMultiSliceMode": 2, - "ucDimension": 2, + "ucMultiSliceMode": 4, + "ucDimension": 4, "ucTrajectory": 1, "ucViewSharing": 1, "ucAsymmetricEchoMode": 1, "ucPOCS": 1, + "ucAsymmetricEchoAllowed": 1, "ucReadoutPartialFourier": 16 }, "sFastImaging": { - "lEPIFactor": 128, - "lTurboFactor": 1, + "lEPIFactor": 1, + "lTurboFactor": 16, "lSliceTurboFactor": 1, "lSegments": 1, + "ulEnableRFSpoiling": 1, "ucPhaseEncRE": 0, "ucSegmentationMode": 1, "lShots": 1, @@ -531,14 +526,8 @@ "lDecouplingType": 1, "lNOEType": 1, "lExcitationType": 1, - "lFinalMatrixSizePhase": 20180918, - "lFinalMatrixSizeRead": 110752, - "lFinalMatrixSizeSlice": 70, "lSpecAppl": 1, - "lSpectralSuppression": 1, - 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ve11c\/master r\/e634e98; Dec 19 2017 11:11:25 by eja", - "alFree": [4352,0,6400,10240,0,0,0,1,0,3,11,0,0,2,1,0,1,1,1,1,10,40000,100000,1,0,2,1,1,0,100,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,1,1], - "adFree": [1,12,3,12] - }, "sParametricMapping": { "ucParametricMap": 1 }, @@ -698,46 +683,46 @@ "lMultiBandFactor": 1 } }, - "GradientMode": "", + "GradientMode": "Whisper", "FlowCompensation": "No", "RFSWDOperationMode": 0, "RFSWDMostCriticalAspect": "Head", - "SARMostCriticalAspect": [3.2,0.39586831,0], - "TablePositionOrigin": [0,0,-1259], - "FmriExternalInfo": "dee3a27f-7d78-4112-b63f-58fe65fc5773||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:11:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", - "B1rms": [100,1.04654332], + "SARMostCriticalAspect": [3.2,0.32316834,0], + "TablePositionOrigin": [0,0,-1268], + "B1rms": [100,0.93197011], "B1rmsSupervision": 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F35.3", - "Private_0051_100e": "Tra ", - "Private_0051_100f": "HC1-6 ", + "Private_0051_100a": "TA 04:08", + "Private_0051_100b": "240*256 ", + "Private_0051_100c": "FoV 240*256 ", + "Private_0051_100d": "SP L113.9 ", + "Private_0051_100e": "Sag ", + "Private_0051_100f": "HC1-7;NC1,2 ", + "Private_0051_1011": "p2", "Private_0051_1012": "TP 0", "Private_0051_1013": "+LPH", - "Private_0051_1016": "M\/MB\/ND ", - "Private_0051_1017": "SL 2.0", - "Private_0051_1019": "A1\/PFP\/FS ", - "StartOfPixelData": 171826, - "SizeOfPixelData": 18432, + "Private_0051_1016": "p2 M\/ND ", + "Private_0051_1017": "SL 1.0", + "Private_0051_1019": "A1\/IR ", + "StartOfPixelData": 152370, + "SizeOfPixelData": 122880, "VROfPixelData": "OW" } ] diff --git a/example1/source/002/s01558/nii/s1558-0012-00001-000224-01.nii b/example1/source/002/s01558/nii/s1558-0012-00001-000224-01.nii new file mode 100644 index 0000000..7ac8e99 --- /dev/null +++ b/example1/source/002/s01558/nii/s1558-0012-00001-000224-01.nii @@ -0,0 +1 @@ +s1512-0012-00001-000224-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/s1558-0012-00002-000071-01.json b/example1/source/002/s01558/nii/s1558-0012-00002-000071-01.json deleted file mode 100644 index 6bd98cf..0000000 --- a/example1/source/002/s01558/nii/s1558-0012-00002-000071-01.json +++ /dev/null @@ -1,744 +0,0 @@ -{ - "history": { - "procstep": { - "descrip": "dicom to nifti import", - "version": "spm_dicom_convert.m - version 6899 - SPM12 (12.3)", - "procpar": [] - }, - "input": { - "filename": "AnonymousFileName", - "history": [] - }, - "output": { - "imtype": "ORIGINAL\\PRIMARY\\M\\MB\\ND", - "units": "a.u." - } - }, - "acqpar": [ - { - "FileMetaInformationGroupLength": 178, - "FileMetaInformationVersion": [0,1], - "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091811081119835635792", - "TransferSyntaxUID": "1.2.840.10008.1.2.1", - "ImplementationClassUID": 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No newline at end of file diff --git a/example1/source/002/s01558/nii/s1558-0012-00002-000071-01.nii b/example1/source/002/s01558/nii/s1558-0012-00002-000071-01.nii deleted file mode 100644 index 1c55c62..0000000 --- a/example1/source/002/s01558/nii/s1558-0012-00002-000071-01.nii +++ /dev/null @@ -1 +0,0 @@ -s1558-0012-00002-000071-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/s1558-0012-00003-000141-01.json b/example1/source/002/s01558/nii/s1558-0012-00003-000141-01.json deleted file mode 100644 index 746b7c9..0000000 --- a/example1/source/002/s01558/nii/s1558-0012-00003-000141-01.json +++ /dev/null @@ -1,744 +0,0 @@ -{ - "history": { - "procstep": { - "descrip": "dicom to nifti import", - "version": "spm_dicom_convert.m - version 6899 - SPM12 (12.3)", - "procpar": [] - }, - "input": { - "filename": "AnonymousFileName", - "history": [] - }, - "output": { - "imtype": "ORIGINAL\\PRIMARY\\M\\MB\\ND", - "units": "a.u." - } - }, - "acqpar": [ - { - 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example1/source/002/s01558/nii/s1558-0014-00001-000001-01.json rename to example1/source/002/s01558/nii/s1558-0013-00001-000192-01.json index 2041ebd..81c4783 100644 --- a/example1/source/002/s01558/nii/s1558-0014-00001-000001-01.json +++ b/example1/source/002/s01558/nii/s1558-0013-00001-000192-01.json @@ -10,7 +10,7 @@ "history": [] }, "output": { - "imtype": "ORIGINAL\\PRIMARY\\M\\MB\\ND", + "imtype": "ORIGINAL\\PRIMARY\\M\\ND ", "units": "a.u." } }, @@ -19,170 +19,168 @@ "FileMetaInformationGroupLength": 178, "FileMetaInformationVersion": [0,1], "MediaStorageSOPClassUID": "1.2.840.10008.5.1.4.1.1.4", - "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091811175131771970352", + "MediaStorageSOPInstanceUID": "1.3.12.2.1107.5.2.43.66021.2018091111231296569036319", "TransferSyntaxUID": "1.2.840.10008.1.2.1", "ImplementationClassUID": "1.3.12.2.1107.5.2", "ImplementationVersionName": "MR_VE11C", "SpecificCharacterSet": "ISO_IR 100", - "ImageType": 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"MR", - "CSASeriesHeaderVersion": "20180918", + "CSASeriesHeaderVersion": "20180911", "CSASeriesHeaderInfo": { "UsedPatientWeight": 77, "NumberOfPrescans": 0, - "TransmitterCalibration": 0, + "TransmitterCalibration": 248.063651, "PhaseGradientAmplitude": 0, "ReadoutGradientAmplitude": 0, "SelectionGradientAmplitude": 0, - "GradientDelayTime": [35,35,31], + "GradientDelayTime": [35,36,31], "RfWatchdogMask": 0, - "Sed": [1000000,162.58111576,162.58111576], - "SequenceFileOwner": "USER", + "Sed": [1000000,170.15678126,173.35933039], + "SequenceFileOwner": "SIEMENS", "Stim_mon_mode": 2, - "Operation_mode_flag": 2, + "Operation_mode_flag": 0, "dBdt_max": 0, "t_puls_max": 0, "dBdt_thresh": 0, "dBdt_limit": 0, "SW_korr_faktor": 1, - "Stim_max_online": [41.57765198,1.15220046,1.47571492], - "Stim_max_ges_norm_online": 0.97572392, + "Stim_max_online": [16.27153206,11.79406071,13.50672531], + "Stim_max_ges_norm_online": 0.72409743, "Stim_lim": [42.70069885,23.97319984,36.48099899], 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"ucDisableChangeStoreImages": 1, "ucAAMode": 1, "ucAARegionMode": 1, "ucAARefMode": 1, "ucReconstructionMode": 1, - "ucOneSeriesForAllMeas": 1, + "ucOneSeriesForAllMeas": 4, "ucPHAPSMode": 1, "ulWrapUpMagn": 1, "lAverages": 1, "dAveragesDouble": 1, - "lScanTimeSec": 33, - "lTotalScanTimeSec": 33, - "dRefSNR": 35272.6522961, - "dRefSNR_VOI": 31353.4687076, + "lScanTimeSec": 345, + "lTotalScanTimeSec": 347, + "dRefSNR": 105215.299268, + "dRefSNR_VOI": 105215.299268, "ucMotionCorr": 1, "ucCineMode": 1, - "ucSequenceType": 4, - "ucCoilCombineMode": 1, - "ucFlipAngleMode": 1, + "ucSequenceType": 8, + "ucCoilCombineMode": 2, + "ucFlipAngleMode": 16, "lTOM": 1, - "lProtID": -52, - "lSequenceID": 34, + "lProtID": -49, + "lSequenceID": 30, "ucReadOutMode": 1, "ucBold3dPace": 1, "ucForcePositioningOnNDIS": 1, @@ -240,9 +241,9 @@ "ucTmapB0Correction": 1, "ucTmapEval": 1, "ucTmapImageType": 1, - "ulOrganUnderExamination": 1, - "dTissueT1": 10, - "dTissueT2": 5, + "ulOrganUnderExamination": 2048, + 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"aflTimeConstant": 0.582077980042 } }, - "alShimCurrent": [527,0,93,-284,31] + "alShimCurrent": [6,14,-289,-78,4] }, "sRXSPEC": { "lGain": 1, "bGainValid": 1, "UseDoubleDataRate": 0, - "alDwellTime": 2500 + "alDwellTime": 2600 }, "sAdjData": { "uiAdjFreMode": 1, @@ -335,38 +336,34 @@ "uiAdjRFMapMode": 1, "uiAdjMDSMode": 1, "uiAdjTableTolerance": 1, - "uiAdjTraWarningOverrideKey": 1091594877, - "uiAdjProtID": 9, - "uiAdjFreProtRelated": 1, + "uiAdjProtID": 8, "lCoupleAdjVolTo": 1, "uiAdjB0AcqMode": 1, "uiAdjB1AcqMode": 1, "sAdjVolume": { - "dThickness": 140, - "dPhaseFOV": 192, - "dReadoutFOV": 192, + "dThickness": 192, + "dPhaseFOV": 240, + "dReadoutFOV": 256, "sPosition": { - "dSag": -4.81927710843, - "dCor": -13.8554216867, - "dTra": 33.734939759 + "dSag": 3.01204819288, + "dCor": -17.4698795216, + "dTra": -13.2530120506 }, "sNormal": { - "dTra": 1 + "dSag": 1 } } }, - "alTR": 4070000, - "alTI": 2500000, - "alTE": 70200, + "alTR": 5000000, + "alTI": [1800000,100000], + "alTE": 516000, "acFlowComp": 1, "sSliceArray": { - "lSize": 70, + "lSize": 1, + "lSag": 1, "lConc": 1, "ucMode": 4, - "ucAnatomicalSliceMode": 4, - "alSliceAcqOrder": [0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69], - "anAsc": [0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69], - "anPos": [0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69], + "ucAnatomicalSliceMode": 1, "sTSat": { "dThickness": 50, "ulShape": 1 @@ -375,9 +372,10 @@ "sGroupArray": { "lSize": 1, "asGroup": { - "nSize": 70 + "nSize": 1, + "dDistFact": 0.5 }, - "anMember": [0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,-1], + "anMember": [0,-1], "sPSat": { "dThickness": 50, "dGap": 10, @@ -425,17 +423,20 @@ "ucMotionCorr": 2 }, "sPrepPulses": { - "ucFatSat": 1, + "ucFatSat": 4, "ucWaterSat": 4, - "ucInversion": 4, + "ucInversion": 8, "ucSatRecovery": 1, "ucT2Prep": 1, "ucTIScout": 1, - "ucFatSatMode": 1, + "ucFatSatMode": 2, "dDarkBloodThickness": 200, "dDarkBloodFlipAngle": 200, "dIRPulseThicknessFactor": 0.77, "ucBloodSuppression": 1, + "dGradMomRead": 200, + "dGradMomPhase": 200, + "dGradMomSlice": 200, "lPhaseCorrectionMode": 1, "ucIRScheme": 1, "lFatSupOpt": 1, @@ -443,24 +444,23 @@ }, "sKSpace": { "dPhaseResolution": 1, - "dPhaseOversamplingForDialog": 0.12, "dSliceResolution": 1, "dAngioDynCentralRegionA": 20, "dAngioDynSamplingDensityB": 25, - "dSeqPhasePartialFourierForSNR": 1, - "lBaseResolution": 96, - "lPhaseEncodingLines": 108, - "lPartitions": 64, - "lImagesPerSlab": 64, + "dSeqPhasePartialFourierForSNR": 0.9625, + "lBaseResolution": 256, + "lPhaseEncodingLines": 240, + "lPartitions": 192, + "lImagesPerSlab": 192, "lRadialViews": 64, "lRadialInterleavesPerImage": 2, "lLinesPerShot": 1, "unReordering": 1, - "ucPhasePartialFourier": 4, - "ucSlicePartialFourier": 16, - "ucAveragingMode": 2, - "ucMultiSliceMode": 2, - "ucDimension": 2, + "ucPhasePartialFourier": 32, + "ucSlicePartialFourier": 4, + "ucAveragingMode": 1, + "ucMultiSliceMode": 1, + "ucDimension": 4, "ucTrajectory": 1, "ucViewSharing": 1, "ucAsymmetricEchoMode": 1, @@ -468,10 +468,11 @@ "ucReadoutPartialFourier": 16 }, "sFastImaging": { - "lEPIFactor": 128, - "lTurboFactor": 1, + "lEPIFactor": 1, + "lTurboFactor": 278, "lSliceTurboFactor": 1, "lSegments": 1, + "ulEnableRFSpoiling": 1, "ucPhaseEncRE": 0, "ucSegmentationMode": 1, "lShots": 1, @@ -532,14 +533,8 @@ "lDecouplingType": 1, "lNOEType": 1, "lExcitationType": 1, - "lFinalMatrixSizePhase": 20180918, - "lFinalMatrixSizeRead": 111729, - "lFinalMatrixSizeSlice": 70, "lSpecAppl": 1, - "lSpectralSuppression": 1, - "dSpecLipidSupprBandwidth": 12.64, - "dSpecLipidSupprDeltaPos": 34.59, - "dSpecWaterSupprBandwidth": 0.627558795843 + "lSpectralSuppression": 1 }, "sAngio": { "ucPCFlowMode": 2, @@ -557,10 +552,11 @@ "lNoiseDecorrDefaultMode": 4 }, "sPat": { - "lAccelFactPE": 1, + "lAccelFactPE": 2, "lAccelFact3D": 1, - "ucPATMode": 1, - "ucRefScanMode": 1, + "lRefLinesPE": 24, + "ucPATMode": 2, + "ucRefScanMode": 2, "ucTPatAverageAllFrames": 1, "ulCaipirinhaMode": 1 }, @@ -596,16 +592,16 @@ "Laterality": 0, "SliceInformation": { "sPosition": { - "dSag": -4.81927710843, - "dCor": -13.8554216867, - "dTra": 33.734939759 + "dSag": 3.01204819288, + "dCor": -17.4698795216, + "dTra": -13.2530120506 }, "sNormal": { - "dTra": 1 + "dSag": 1 } } }, - "adFlipAngleDegree": [90,180], + "adFlipAngleDegree": 120, "sCoilSelectUI": { "dOverallImageScaleFactor": 1, "dOverallImageScaleCorrectionFactor": 1, @@ -623,11 +619,6 @@ } ] }, - "sWipMemBlock": { - "tFree": "c5875b26-e04b-455c-9e37-8edeff1f923d||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:11:25 by eja", - "alFree": [4096,0,6400,10240,0,0,0,1,0,3,11,0,0,2,1,0,1,1,1,1,10,40000,100000,1,0,2,1,1,0,100,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,1,1], - "adFree": [1,12,3,12] - }, "sParametricMapping": { "ucParametricMap": 1 }, @@ -699,46 +690,46 @@ "lMultiBandFactor": 1 } }, - "GradientMode": "", + "GradientMode": "Fast", "FlowCompensation": "No", "RFSWDOperationMode": 0, - "RFSWDMostCriticalAspect": "Whole Body", - "SARMostCriticalAspect": [2,0,0], - "TablePositionOrigin": [0,0,-1259], - "FmriExternalInfo": "c5875b26-e04b-455c-9e37-8edeff1f923d||Sequence: R016 ve11c\/master r\/e634e98; Dec 19 2017 11:11:25 by eja||ICE_Win32: R016 ve11c\/master r\/8780670; Nov 27 2017 15:10:14 by eja||ICE_Linux: ve11c\/master r\/8780670; Nov 27 2017 21:10:33 by eja||CMRR_MBIcePrg2D", - "B1rms": [-9999,-9999], + "RFSWDMostCriticalAspect": "Head", + "SARMostCriticalAspect": [3.2,0.51100143,0], + "TablePositionOrigin": [0,0,-1268], + "B1rms": [100,1.17192181], "B1rmsSupervision": "NO", - "TalesReferencePower": 1159.03860598, + "TalesReferencePower": 1069.64922, "PhaseSliceOversampling": "2D", "SafetyStandard": "IEC", "DICOMImageFlavor": "", "DICOMAcquisitionContrast": "", - "EchoTrainLength": 81, - "RFEchoTrainLength": 1, - "GradientEchoTrainLength": 81, + "EchoTrainLength": 278, + "RFEchoTrainLength": 278, + "GradientEchoTrainLength": 0, "Laterality4MF": "U" }, "Private_0029_1160": "com ", - "PerformedProcedureStepStartDate": 737321, - "PerformedProcedureStepStartTime": 37431.27, - "PerformedProcedureStepID": "MR20180918102351", + "PerformedProcedureStepStartDate": 737314, + "PerformedProcedureStepStartTime": 36946.163, + "PerformedProcedureStepID": "MR20180911101546", "PerformedProcedureStepDescription": "protocols^studies ", 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a/example1/source/002/s01558/nii/s1558-0013-00001-000192-01.nii b/example1/source/002/s01558/nii/s1558-0013-00001-000192-01.nii new file mode 100644 index 0000000..088804f --- /dev/null +++ b/example1/source/002/s01558/nii/s1558-0013-00001-000192-01.nii @@ -0,0 +1 @@ +s1512-0013-00001-000192-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/s1558-0014-00001-000001-01.nii b/example1/source/002/s01558/nii/s1558-0014-00001-000001-01.nii deleted file mode 100644 index c23e246..0000000 --- a/example1/source/002/s01558/nii/s1558-0014-00001-000001-01.nii +++ /dev/null @@ -1 +0,0 @@ -s1558-0014-00001-000001-01.nii \ No newline at end of file diff --git a/example1/source/002/s01558/nii/s1558-0014-00002-000071-01.json b/example1/source/002/s01558/nii/s1558-0014-00002-000071-01.json deleted file mode 100644 index 73bce23..0000000 --- a/example1/source/002/s01558/nii/s1558-0014-00002-000071-01.json +++ /dev/null @@ -1,745 +0,0 @@ -{ - "history": { - "procstep": { - 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